Literature DB >> 21578535

5-Amino-1-naphthol.

Agnieszka Czapik1, Arkadiusz Nitka, Maria Gdaniec.   

Abstract

In the title compound, C(10)H(9)NO, the amino and the hydr-oxy groups act both as a single donor and a single acceptor in <span class="Chemical">hydrogen bonding. In the crystal, mol-ecules are connected via chains of inter-molecular ⋯N-H⋯O-H⋯ inter-actions, forming a two-dimensional polymeric structure resembling the hydrogen-bonded mol-ecular assembly found in the crystal structure of naphthalene-1,5-diol. Within this layer, mol-ecules related by a translation along the a axis are arranged into slipped stacks via π-π stacking inter-actions [inter-planar distance = 3.450 (4) Å]. The amino N atom shows sp(3) hybridization and the two attached H atoms are located on the same side of the aromatic ring.

Entities:  

Year:  2009        PMID: 21578535      PMCID: PMC2971357          DOI: 10.1107/S1600536809045152

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of 1,5-dihydroxy­naphthalene, see: Belskii et al. (1990 ▶). For amino-hydr­oxy group recognition and packing motifs of aminols, see: Ermer & Eling (1994 ▶); Hanessian et al. (1994 ▶); Allen et al. (1997 ▶); Dey et al. (2005 ▶).

Experimental

Crystal data

C10H9NO M = 159.18 Orthorhombic, a = 4.8607 (2) Å b = 12.3175 (6) Å c = 13.0565 (5) Å V = 781.71 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 130 K 0.30 × 0.15 × 0.02 mm

Data collection

Kuma KM-4-CCD κ-geometry diffractometer Absorption correction: none 8484 measured reflections 963 independent reflections 726 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.091 S = 1.06 963 reflections 121 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data <span class="Disease">reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045152/su2154sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045152/su2154Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9NODx = 1.353 Mg m3
Mr = 159.18Melting point: 461 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2383 reflections
a = 4.8607 (2) Åθ = 4–27°
b = 12.3175 (6) ŵ = 0.09 mm1
c = 13.0565 (5) ÅT = 130 K
V = 781.71 (6) Å3Plate, pale pink
Z = 40.30 × 0.15 × 0.02 mm
F(000) = 336
Kuma KM-4-CCD κ-geometry diffractometer726 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.037
graphiteθmax = 26.4°, θmin = 4.5°
ω scansh = −6→5
8484 measured reflectionsk = −15→15
963 independent reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0554P)2] where P = (Fo2 + 2Fc2)/3
963 reflections(Δ/σ)max = 0.001
121 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2605 (5)0.48405 (18)0.50574 (15)0.0232 (5)
C20.1125 (5)0.57846 (19)0.51109 (17)0.0269 (6)
H2−0.01350.58870.56380.032*
C30.1504 (5)0.65964 (19)0.43738 (17)0.0268 (6)
H30.04660.72300.44090.032*
C40.3386 (5)0.64703 (19)0.35998 (17)0.0248 (6)
H40.36300.70220.31220.030*
C50.6956 (5)0.53275 (18)0.27339 (16)0.0239 (6)
C60.8417 (5)0.43775 (19)0.26935 (17)0.0265 (6)
H60.97010.42690.21750.032*
C70.7983 (5)0.35673 (19)0.34304 (17)0.0283 (6)
H70.90090.29310.33990.034*
C80.6085 (5)0.36936 (19)0.41937 (17)0.0256 (6)
H80.57950.31410.46670.031*
C90.4571 (5)0.46670 (19)0.42580 (16)0.0215 (5)
C100.4964 (5)0.55036 (18)0.35220 (16)0.0215 (5)
O110.2370 (4)0.40173 (13)0.57550 (11)0.0289 (4)
H11O0.067 (7)0.404 (2)0.609 (2)0.058 (10)*
N120.7265 (5)0.61211 (18)0.19544 (14)0.0275 (5)
H12A0.699 (6)0.685 (2)0.2155 (18)0.044 (8)*
H12B0.899 (6)0.601 (2)0.1610 (19)0.038 (8)*
U11U22U33U12U13U23
C10.0231 (12)0.0279 (13)0.0186 (10)−0.0035 (12)−0.0020 (11)0.0014 (10)
C20.0250 (13)0.0332 (14)0.0226 (11)−0.0002 (12)0.0011 (11)−0.0024 (11)
C30.0261 (13)0.0255 (13)0.0288 (12)0.0028 (12)−0.0008 (11)−0.0047 (11)
C40.0250 (13)0.0272 (13)0.0223 (11)−0.0030 (11)−0.0017 (11)0.0001 (10)
C50.0244 (14)0.0283 (13)0.0192 (10)−0.0070 (11)−0.0053 (10)−0.0014 (10)
C60.0232 (13)0.0334 (13)0.0229 (11)0.0006 (12)0.0024 (10)−0.0056 (11)
C70.0294 (15)0.0244 (13)0.0311 (12)0.0055 (12)−0.0022 (11)−0.0044 (11)
C80.0273 (13)0.0278 (13)0.0216 (11)−0.0011 (11)−0.0013 (11)−0.0004 (10)
C90.0187 (12)0.0263 (13)0.0194 (10)−0.0006 (11)−0.0030 (10)−0.0036 (10)
C100.0204 (12)0.0249 (13)0.0191 (10)−0.0044 (11)−0.0044 (10)−0.0006 (10)
O110.0269 (9)0.0356 (10)0.0243 (8)−0.0003 (9)0.0036 (8)0.0061 (8)
N120.0271 (12)0.0316 (13)0.0237 (10)−0.0025 (12)0.0005 (10)0.0016 (9)
C1—O111.368 (2)C5—C101.430 (3)
C1—C21.369 (3)C6—C71.402 (3)
C1—C91.431 (3)C6—H60.9300
C2—C31.400 (3)C7—C81.367 (3)
C2—H20.9300C7—H70.9300
C3—C41.372 (3)C8—C91.409 (3)
C3—H30.9300C8—H80.9300
C4—C101.420 (3)C9—C101.422 (3)
C4—H40.9300O11—H11O0.94 (3)
C5—C61.370 (3)N12—H12A0.95 (3)
C5—N121.419 (3)N12—H12B0.96 (3)
O11—C1—C2123.5 (2)C7—C6—H6119.9
O11—C1—C9115.5 (2)C8—C7—C6121.4 (2)
C2—C1—C9120.99 (19)C8—C7—H7119.3
C1—C2—C3120.2 (2)C6—C7—H7119.3
C1—C2—H2119.9C7—C8—C9119.5 (2)
C3—C2—H2119.9C7—C8—H8120.2
C4—C3—C2120.9 (2)C9—C8—H8120.2
C4—C3—H3119.6C8—C9—C10120.4 (2)
C2—C3—H3119.6C8—C9—C1121.3 (2)
C3—C4—C10120.5 (2)C10—C9—C1118.3 (2)
C3—C4—H4119.7C4—C10—C9119.1 (2)
C10—C4—H4119.7C4—C10—C5123.0 (2)
C6—C5—N12120.4 (2)C9—C10—C5117.9 (2)
C6—C5—C10120.6 (2)C1—O11—H11O111.6 (18)
N12—C5—C10118.9 (2)C5—N12—H12A116.2 (15)
C5—C6—C7120.2 (2)C5—N12—H12B109.1 (15)
C5—C6—H6119.9H12A—N12—H12B113 (2)
D—H···AD—HH···AD···AD—H···A
O11—H11O···N12i0.94 (3)1.83 (3)2.749 (3)167 (3)
N12—H12B···O11ii0.96 (3)2.09 (3)3.046 (3)171 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O11—H11O⋯N12i0.94 (3)1.83 (3)2.749 (3)167 (3)
N12—H12B⋯O11ii0.96 (3)2.09 (3)3.046 (3)171 (2)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure prediction of aminols: advantages of a supramolecular synthon approach with experimental structures.

Authors:  Archan Dey; Michael T Kirchner; Venu R Vangala; Gautam R Desiraju; Raju Mondal; Judith A K Howard
Journal:  J Am Chem Soc       Date:  2005-08-03       Impact factor: 15.419

  2 in total

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