Literature DB >> 21578533

(5-Ethenyl-1-aza-bicyclo-[2.2.2]octan-2-yl)(6-meth-oxy-3-quinol-yl)methanol methanol solvate.

Savitha Muramulla, Hadi D Arman, Cong-Gui Zhao, Edward R T Tiekink.   

Abstract

In the title methanol solvate, C(20)H(24)N(2)O(2)·CH(4)O, an L-shaped conformation is found as the two substituents at the central hydr-<span class="Chemical">oxy group are almost orthogonal to each other [the C-C-C angle at the central sp(3)-C atom is 110.12 (13)°]. The most notable feature of the crystal packing is the formation of supra-molecular chains along the b direction mediated by O-H⋯N hydrogen bonds occurring between the hydr-oxy and quinoline N atoms; the methanol mol-ecules are linked to these chains via O-H⋯N(amine) hydrogen bonds. C-H⋯O inter-actions also occur.

Entities:  

Year:  2009        PMID: 21578533      PMCID: PMC2971146          DOI: 10.1107/S1600536809045073

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pre-catalyst mol­ecules for the Michael addition of acetone to trans-β-nitro­styrene, see: Mandal & Zhao (2008 ▶).

Experimental

Crystal data

C20H24N2O2·CH4O M = 356.45 Orthorhombic, a = 9.5374 (13) Å b = 12.9842 (17) Å c = 15.871 (2) Å V = 1965.4 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 98 K 0.12 × 0.10 × 0.04 mm

Data collection

Rigaku AFC12K/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.788, T max = 1.000 14410 measured reflections 2561 independent reflections 2501 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.108 S = 1.08 2561 reflections 243 parameters 2 restraints H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045073/hb5191sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045073/hb5191Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H24N2O2·CH4OF(000) = 768
Mr = 356.45Dx = 1.205 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7299 reflections
a = 9.5374 (13) Åθ = 2.0–40.2°
b = 12.9842 (17) ŵ = 0.08 mm1
c = 15.871 (2) ÅT = 98 K
V = 1965.4 (4) Å3Platelet, colourless
Z = 40.12 × 0.10 × 0.04 mm
Rigaku AFC12K/SATURN724 diffractometer2561 independent reflections
Radiation source: fine-focus sealed tube2501 reflections with I > 2σ(I)
graphiteRint = 0.043
ω scansθmax = 27.5°, θmin = 2.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −12→12
Tmin = 0.788, Tmax = 1.000k = −16→16
14410 measured reflectionsl = −18→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.108w = 1/[σ2(Fo2) + (0.067P)2 + 0.3164P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
2561 reflectionsΔρmax = 0.35 e Å3
243 parametersΔρmin = −0.27 e Å3
2 restraintsAbsolute structure: nd
Primary atom site location: structure-invariant direct methods
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.09211 (13)0.48893 (9)0.86000 (8)0.0208 (3)
H1O−0.08590.55280.85260.031*
O20.56486 (13)0.36533 (10)0.77309 (8)0.0235 (3)
O30.32503 (17)0.60866 (12)0.92437 (9)0.0349 (4)
H3O0.26070.57120.94350.052*
N10.12984 (17)0.48168 (12)1.00313 (9)0.0245 (3)
N20.05966 (17)0.19494 (12)0.67553 (10)0.0228 (3)
C10.08927 (18)0.39987 (13)0.94193 (10)0.0191 (3)
H10.17540.35800.93120.023*
C2−0.0200 (2)0.32607 (14)0.98034 (12)0.0250 (4)
H2A−0.11350.33930.95560.030*
H2B0.00610.25370.96840.030*
C3−0.0236 (2)0.34482 (17)1.07595 (13)0.0299 (4)
H3−0.08270.29131.10410.036*
C40.1270 (2)0.33999 (17)1.10976 (13)0.0324 (5)
H4A0.17110.27381.09360.039*
H4B0.12660.34491.17200.039*
C50.2101 (2)0.43074 (17)1.07174 (13)0.0304 (4)
H5A0.23100.48161.11650.036*
H5B0.30040.40511.04910.036*
C60.0053 (2)0.53057 (16)1.04185 (12)0.0327 (5)
H6A−0.05390.56070.99700.039*
H6B0.03620.58721.07920.039*
C7−0.0833 (2)0.45269 (18)1.09371 (12)0.0329 (5)
H7−0.06940.46811.15490.039*
C8−0.2379 (3)0.4605 (2)1.07452 (16)0.0498 (7)
H8−0.26500.46261.01700.060*
C9−0.3375 (3)0.4646 (2)1.13121 (18)0.0534 (7)
H9A−0.31450.46261.18940.064*
H9B−0.43270.46951.11410.064*
C100.04468 (16)0.44563 (13)0.85620 (11)0.0175 (3)
H100.11260.50100.84020.021*
C110.04985 (18)0.36143 (13)0.78993 (10)0.0182 (3)
C12−0.07008 (19)0.31535 (14)0.76062 (12)0.0227 (4)
H12−0.15930.33920.77870.027*
C13−0.06039 (19)0.23226 (15)0.70350 (12)0.0249 (4)
H13−0.14490.20150.68420.030*
C140.18062 (18)0.24173 (13)0.70160 (10)0.0196 (3)
C150.18147 (17)0.32619 (13)0.75884 (10)0.0172 (3)
C160.31191 (18)0.37064 (13)0.78240 (10)0.0180 (3)
H160.31370.42830.81930.022*
C170.43522 (18)0.33065 (13)0.75211 (11)0.0191 (3)
C180.43402 (19)0.24588 (14)0.69502 (11)0.0213 (3)
H180.51990.21870.67430.026*
C190.31040 (19)0.20397 (14)0.67016 (11)0.0216 (3)
H190.31060.14850.63110.026*
C200.57014 (19)0.44156 (15)0.83814 (14)0.0288 (4)
H20A0.52190.50400.81910.043*
H20B0.66820.45790.85100.043*
H20C0.52400.41500.88880.043*
C210.3789 (4)0.6699 (3)0.98995 (18)0.0793 (13)
H21A0.31870.73030.99790.119*
H21B0.47400.69250.97550.119*
H21C0.38160.62961.04210.119*
U11U22U33U12U13U23
O10.0171 (6)0.0161 (5)0.0292 (6)0.0017 (5)0.0012 (5)−0.0008 (5)
O20.0157 (5)0.0233 (6)0.0314 (6)−0.0006 (5)0.0013 (5)−0.0028 (5)
O30.0421 (9)0.0361 (8)0.0265 (6)−0.0121 (7)0.0075 (6)−0.0059 (6)
N10.0303 (8)0.0229 (7)0.0203 (6)−0.0048 (6)−0.0025 (6)−0.0006 (6)
N20.0230 (7)0.0193 (7)0.0262 (7)−0.0012 (6)−0.0012 (6)−0.0032 (6)
C10.0206 (8)0.0166 (7)0.0202 (7)−0.0011 (6)0.0009 (6)0.0007 (6)
C20.0281 (9)0.0209 (8)0.0259 (8)−0.0048 (7)0.0028 (7)0.0031 (7)
C30.0292 (9)0.0362 (11)0.0242 (8)−0.0031 (8)0.0029 (8)0.0098 (8)
C40.0322 (10)0.0360 (11)0.0291 (9)0.0001 (9)−0.0013 (8)0.0110 (8)
C50.0320 (10)0.0346 (10)0.0244 (8)−0.0049 (8)−0.0060 (8)0.0027 (8)
C60.0487 (12)0.0262 (10)0.0234 (8)0.0091 (9)−0.0014 (9)−0.0047 (8)
C70.0318 (10)0.0468 (12)0.0201 (8)0.0083 (10)0.0039 (8)−0.0020 (8)
C80.0360 (12)0.080 (2)0.0335 (11)0.0157 (13)−0.0006 (10)−0.0086 (13)
C90.0388 (12)0.0715 (19)0.0500 (14)0.0109 (13)0.0095 (11)0.0000 (14)
C100.0151 (7)0.0161 (7)0.0212 (7)0.0002 (6)0.0008 (6)−0.0003 (6)
C110.0189 (7)0.0155 (7)0.0201 (7)−0.0002 (6)0.0010 (6)0.0012 (6)
C120.0178 (7)0.0216 (8)0.0288 (8)0.0019 (7)0.0005 (7)−0.0039 (7)
C130.0208 (8)0.0230 (8)0.0311 (9)−0.0020 (7)−0.0030 (7)−0.0047 (7)
C140.0218 (8)0.0175 (8)0.0195 (7)0.0009 (7)0.0005 (6)−0.0014 (6)
C150.0181 (7)0.0151 (7)0.0184 (7)0.0002 (6)0.0003 (6)0.0009 (6)
C160.0190 (7)0.0163 (7)0.0186 (7)−0.0009 (6)0.0003 (6)0.0007 (6)
C170.0186 (7)0.0180 (8)0.0207 (7)−0.0003 (6)0.0004 (6)0.0033 (6)
C180.0210 (7)0.0211 (8)0.0217 (8)0.0039 (7)0.0046 (7)0.0008 (7)
C190.0252 (8)0.0183 (8)0.0212 (7)0.0025 (7)0.0019 (7)−0.0023 (6)
C200.0171 (7)0.0270 (9)0.0422 (10)−0.0017 (7)−0.0009 (8)−0.0092 (8)
C210.106 (3)0.092 (3)0.0397 (14)−0.069 (2)0.0241 (16)−0.0203 (15)
O1—C101.4218 (19)C7—C81.509 (3)
O1—H1O0.8400C7—H71.0000
O2—C171.357 (2)C8—C91.309 (4)
O2—C201.431 (2)C8—H80.9500
O3—C211.407 (3)C9—H9A0.9500
O3—H3O0.8401C9—H9B0.9500
N1—C61.480 (3)C10—C111.518 (2)
N1—C51.487 (2)C10—H101.0000
N1—C11.490 (2)C11—C121.372 (2)
N2—C131.320 (2)C11—C151.424 (2)
N2—C141.368 (2)C12—C131.412 (2)
C1—C21.541 (2)C12—H120.9500
C1—C101.544 (2)C13—H130.9500
C1—H11.0000C14—C191.422 (2)
C2—C31.537 (3)C14—C151.424 (2)
C2—H2A0.9900C15—C161.421 (2)
C2—H2B0.9900C16—C171.373 (2)
C3—C41.534 (3)C16—H160.9500
C3—C71.538 (3)C17—C181.426 (2)
C3—H31.0000C18—C191.357 (3)
C4—C51.543 (3)C18—H180.9500
C4—H4A0.9900C19—H190.9500
C4—H4B0.9900C20—H20A0.9800
C5—H5A0.9900C20—H20B0.9800
C5—H5B0.9900C20—H20C0.9800
C6—C71.553 (3)C21—H21A0.9800
C6—H6A0.9900C21—H21B0.9800
C6—H6B0.9900C21—H21C0.9800
C10—O1—H1O108.6C9—C8—H8117.5
C17—O2—C20116.01 (13)C7—C8—H8117.5
C21—O3—H3O109.2C8—C9—H9A120.0
C6—N1—C5107.46 (15)C8—C9—H9B120.0
C6—N1—C1111.58 (15)H9A—C9—H9B120.0
C5—N1—C1107.09 (15)O1—C10—C11110.12 (13)
C13—N2—C14117.82 (15)O1—C10—C1111.56 (13)
N1—C1—C2111.16 (14)C11—C10—C1108.93 (14)
N1—C1—C10111.80 (14)O1—C10—H10108.7
C2—C1—C10113.66 (14)C11—C10—H10108.7
N1—C1—H1106.6C1—C10—H10108.7
C2—C1—H1106.6C12—C11—C15118.50 (15)
C10—C1—H1106.6C12—C11—C10121.46 (15)
C3—C2—C1107.88 (15)C15—C11—C10120.01 (14)
C3—C2—H2A110.1C11—C12—C13119.75 (16)
C1—C2—H2A110.1C11—C12—H12120.1
C3—C2—H2B110.1C13—C12—H12120.1
C1—C2—H2B110.1N2—C13—C12123.58 (17)
H2A—C2—H2B108.4N2—C13—H13118.2
C4—C3—C2108.53 (17)C12—C13—H13118.2
C4—C3—C7108.63 (18)N2—C14—C19118.35 (15)
C2—C3—C7109.48 (16)N2—C14—C15122.68 (15)
C4—C3—H3110.1C19—C14—C15118.98 (15)
C2—C3—H3110.1C16—C15—C14119.04 (15)
C7—C3—H3110.1C16—C15—C11123.35 (15)
C3—C4—C5108.25 (16)C14—C15—C11117.60 (15)
C3—C4—H4A110.0C17—C16—C15120.28 (15)
C5—C4—H4A110.0C17—C16—H16119.9
C3—C4—H4B110.0C15—C16—H16119.9
C5—C4—H4B110.0O2—C17—C16124.69 (16)
H4A—C4—H4B108.4O2—C17—C18114.79 (15)
N1—C5—C4111.18 (16)C16—C17—C18120.52 (16)
N1—C5—H5A109.4C19—C18—C17120.08 (16)
C4—C5—H5A109.4C19—C18—H18120.0
N1—C5—H5B109.4C17—C18—H18120.0
C4—C5—H5B109.4C18—C19—C14121.07 (16)
H5A—C5—H5B108.0C18—C19—H19119.5
N1—C6—C7112.16 (16)C14—C19—H19119.5
N1—C6—H6A109.2O2—C20—H20A109.5
C7—C6—H6A109.2O2—C20—H20B109.5
N1—C6—H6B109.2H20A—C20—H20B109.5
C7—C6—H6B109.2O2—C20—H20C109.5
H6A—C6—H6B107.9H20A—C20—H20C109.5
C8—C7—C3112.7 (2)H20B—C20—H20C109.5
C8—C7—C6112.37 (19)O3—C21—H21A109.5
C3—C7—C6107.13 (15)O3—C21—H21B109.5
C8—C7—H7108.2H21A—C21—H21B109.5
C3—C7—H7108.2O3—C21—H21C109.5
C6—C7—H7108.2H21A—C21—H21C109.5
C9—C8—C7124.9 (2)H21B—C21—H21C109.5
C6—N1—C1—C2−48.65 (19)C1—C10—C11—C12103.71 (18)
C5—N1—C1—C268.68 (19)O1—C10—C11—C15163.18 (14)
C6—N1—C1—C1079.54 (17)C1—C10—C11—C15−74.18 (19)
C5—N1—C1—C10−163.12 (14)C15—C11—C12—C132.5 (3)
N1—C1—C2—C3−14.0 (2)C10—C11—C12—C13−175.43 (16)
C10—C1—C2—C3−141.20 (16)C14—N2—C13—C12−2.0 (3)
C1—C2—C3—C4−51.1 (2)C11—C12—C13—N2−0.1 (3)
C1—C2—C3—C767.3 (2)C13—N2—C14—C19−178.37 (17)
C2—C3—C4—C565.3 (2)C13—N2—C14—C151.8 (3)
C7—C3—C4—C5−53.6 (2)N2—C14—C15—C16−179.73 (16)
C6—N1—C5—C466.4 (2)C19—C14—C15—C160.4 (2)
C1—N1—C5—C4−53.6 (2)N2—C14—C15—C110.6 (2)
C3—C4—C5—N1−10.8 (2)C19—C14—C15—C11−179.29 (15)
C5—N1—C6—C7−54.7 (2)C12—C11—C15—C16177.65 (17)
C1—N1—C6—C762.44 (19)C10—C11—C15—C16−4.4 (2)
C4—C3—C7—C8−171.49 (17)C12—C11—C15—C14−2.7 (2)
C2—C3—C7—C870.1 (2)C10—C11—C15—C14175.28 (15)
C4—C3—C7—C664.42 (19)C14—C15—C16—C17−1.8 (2)
C2—C3—C7—C6−53.9 (2)C11—C15—C16—C17177.88 (16)
N1—C6—C7—C8−133.14 (19)C20—O2—C17—C166.9 (2)
N1—C6—C7—C3−8.8 (2)C20—O2—C17—C18−172.46 (15)
C3—C7—C8—C9106.1 (3)C15—C16—C17—O2−177.66 (16)
C6—C7—C8—C9−132.7 (3)C15—C16—C17—C181.6 (2)
N1—C1—C10—O1−76.08 (17)O2—C17—C18—C19179.34 (16)
C2—C1—C10—O150.77 (19)C16—C17—C18—C190.0 (3)
N1—C1—C10—C11162.15 (14)C17—C18—C19—C14−1.4 (3)
C2—C1—C10—C11−71.00 (17)N2—C14—C19—C18−178.68 (17)
O1—C10—C11—C12−18.9 (2)C15—C14—C19—C181.2 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3o···N10.841.952.783 (2)171
O1—H1o···N2i0.841.922.751 (2)173
C20—H20b···O1ii0.982.333.298 (2)171
C18—H18···O3iii0.952.583.471 (2)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3o⋯N10.841.952.783 (2)171
O1—H1o⋯N2i0.841.922.751 (2)173
C20—H20b⋯O1ii0.982.333.298 (2)171
C18—H18⋯O3iii0.952.583.471 (2)155

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Modularly designed organocatalytic assemblies for direct nitro-Michael addition reactions.

Authors:  Tanmay Mandal; Cong-Gui Zhao
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

  2 in total
  1 in total

1.  1-[3,5-Bis(trifluoro-meth-yl)phen-yl]-3-[(5-ethenyl-1-aza-bicyclo-[2.2.2]octan-2-yl)(6-methoxy-quinolin-4-yl)meth-yl]thio-urea-l-proline-methanol (1/1/1).

Authors:  Savitha Muramulla; Hadi D Arman; Cong-Gui Zhao; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14
  1 in total

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