Literature DB >> 21578530

Methyl 3-(3-pyridylmethyl-ene)carbazate.

Yu-Feng Li, Hai-Xing Liu, Fang-Fang Jian.   

Abstract

In the crystal of the title compound, C(8)H(9)N(3)O(2), mol-ecules are linked by N-H⋯N hydrogen bonds, forming S(7) chains propagating in [010].

Entities:  

Year:  2009        PMID: 21578530      PMCID: PMC2971159          DOI: 10.1107/S1600536809045024

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff bases, see: Cimerman et al. (1997 ▶).

Experimental

Crystal data

C8H9N3O2 M = 179.18 Orthorhombic, a = 10.585 (2) Å b = 10.019 (2) Å c = 16.311 (3) Å V = 1729.8 (6) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.26 × 0.21 × 0.19 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: none 15411 measured reflections 1984 independent reflections 1794 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.128 S = 1.08 1984 reflections 118 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809045024/hb5196sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809045024/hb5196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9N3O2Dx = 1.376 Mg m3
Mr = 179.18Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 1985 reflections
a = 10.585 (2) Åθ = 3.4–27.5°
b = 10.019 (2) ŵ = 0.10 mm1
c = 16.311 (3) ÅT = 293 K
V = 1729.8 (6) Å3Block, colourless
Z = 80.26 × 0.21 × 0.19 mm
F(000) = 752
Bruker SMART CCD diffractometer1794 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
graphiteθmax = 27.5°, θmin = 3.1°
ω scansh = −13→13
15411 measured reflectionsk = −13→12
1984 independent reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0867P)2 + 0.1822P] where P = (Fo2 + 2Fc2)/3
1984 reflections(Δ/σ)max < 0.001
118 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.18815 (8)0.11348 (8)0.57072 (5)0.0433 (2)
C30.35300 (9)−0.17778 (10)0.74434 (7)0.0343 (3)
H3A0.4286−0.13750.72910.041*
N40.48145 (8)−0.43908 (10)0.88319 (6)0.0390 (3)
C50.35393 (9)−0.28611 (10)0.80449 (6)0.0311 (2)
N10.26042 (8)−0.03820 (9)0.65555 (6)0.0372 (2)
H1A0.3336−0.01240.63910.045*
C40.24493 (9)−0.34567 (12)0.83549 (7)0.0377 (3)
H4B0.1656−0.31560.81940.045*
N20.24948 (8)−0.13809 (9)0.71265 (5)0.0345 (2)
C20.15392 (9)0.01936 (10)0.62537 (6)0.0339 (3)
O10.04701 (7)−0.00686 (10)0.64392 (6)0.0541 (3)
C60.46946 (9)−0.33613 (11)0.83129 (6)0.0358 (3)
H6A0.5428−0.29570.81200.043*
C80.37535 (11)−0.49405 (11)0.91219 (7)0.0393 (3)
H8A0.3819−0.56510.94860.047*
C70.25615 (10)−0.44962 (12)0.89025 (7)0.0414 (3)
H7A0.1845−0.48960.91230.050*
C10.08717 (14)0.19038 (13)0.53648 (8)0.0523 (3)
H1B0.12090.25460.49870.078*
H1C0.04300.23590.57960.078*
H1D0.02980.13220.50820.078*
U11U22U33U12U13U23
O20.0420 (5)0.0450 (5)0.0429 (5)0.0031 (3)0.0027 (3)0.0115 (3)
C30.0289 (5)0.0385 (5)0.0355 (5)−0.0040 (4)−0.0007 (4)0.0006 (4)
N40.0315 (5)0.0440 (5)0.0415 (5)0.0086 (4)−0.0001 (4)0.0016 (4)
C50.0289 (5)0.0341 (5)0.0302 (5)−0.0005 (4)−0.0009 (3)−0.0034 (4)
N10.0277 (4)0.0426 (5)0.0413 (5)−0.0042 (3)−0.0005 (3)0.0102 (4)
C40.0257 (5)0.0467 (6)0.0407 (6)−0.0008 (4)−0.0037 (4)0.0042 (4)
N20.0325 (4)0.0364 (5)0.0346 (4)−0.0039 (3)−0.0018 (3)0.0033 (3)
C20.0324 (5)0.0363 (5)0.0330 (5)−0.0018 (4)−0.0015 (4)0.0005 (4)
O10.0284 (4)0.0685 (6)0.0656 (6)−0.0020 (4)−0.0018 (4)0.0220 (5)
C60.0263 (5)0.0430 (6)0.0380 (5)0.0009 (4)0.0026 (4)−0.0003 (4)
C80.0400 (6)0.0373 (5)0.0407 (5)0.0030 (4)−0.0004 (4)0.0038 (4)
C70.0312 (5)0.0465 (6)0.0463 (6)−0.0069 (4)0.0005 (4)0.0064 (5)
C10.0603 (8)0.0478 (6)0.0489 (7)0.0117 (6)−0.0049 (6)0.0102 (5)
O2—C21.3472 (13)N1—H1A0.8600
O2—C11.4312 (15)C4—C71.3771 (16)
C3—N21.2752 (13)C4—H4B0.9300
C3—C51.4631 (14)C2—O11.2005 (13)
C3—H3A0.9300C6—H6A0.9300
N4—C81.3373 (14)C8—C71.3850 (15)
N4—C61.3403 (14)C8—H8A0.9300
C5—C61.3920 (13)C7—H7A0.9300
C5—C41.3940 (13)C1—H1B0.9600
N1—C21.3586 (13)C1—H1C0.9600
N1—N21.3719 (12)C1—H1D0.9600
C2—O2—C1115.73 (9)O2—C2—N1108.28 (9)
N2—C3—C5120.59 (9)N4—C6—C5123.96 (9)
N2—C3—H3A119.7N4—C6—H6A118.0
C5—C3—H3A119.7C5—C6—H6A118.0
C8—N4—C6117.44 (9)N4—C8—C7122.77 (10)
C6—C5—C4117.33 (9)N4—C8—H8A118.6
C6—C5—C3118.92 (8)C7—C8—H8A118.6
C4—C5—C3123.73 (8)C4—C7—C8119.29 (10)
C2—N1—N2119.05 (8)C4—C7—H7A120.4
C2—N1—H1A120.5C8—C7—H7A120.4
N2—N1—H1A120.5O2—C1—H1B109.5
C7—C4—C5119.18 (9)O2—C1—H1C109.5
C7—C4—H4B120.4H1B—C1—H1C109.5
C5—C4—H4B120.4O2—C1—H1D109.5
C3—N2—N1115.47 (8)H1B—C1—H1D109.5
O1—C2—O2124.99 (10)H1C—C1—H1D109.5
O1—C2—N1126.73 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N4i0.862.122.9751 (14)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N4i0.862.122.9751 (14)171

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
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  1 in total
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