Literature DB >> 21578521

N-[(R)-(2-Chloro-phen-yl)(cyclo-pent-yl)meth-yl]-N-[(R)-(2-hydr-oxy-5-methyl-phen-yl)(phen-yl)meth-yl]acetamide.

Guang-You Zhang, Di-Juan Chen, Shu-Hong Wang, Ting Yang, Jian-Guo Chang.   

Abstract

In the title compound, C(28)H(30)ClNO(2), the cyclo-pentane ring adopts an envelope conformation. In the crystal structure, mol-ecules are linked by inter-molecular O-H⋯O hydrogen bonds, forming chains running along the a axis.

Entities:  

Year:  2009        PMID: 21578521      PMCID: PMC2971343          DOI: 10.1107/S1600536809044808

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to amides, see: Calligaris et al. (1972 ▶); Ali et al. (2002 ▶); Cukurovali et al. (2002 ▶); Sriram et al. (2006 ▶); Kargar et al. (2009 ▶); Takenaka et al. (2002 ▶); Varlamov et al. (2003 ▶); Zhang et al. (2003 ▶). For the synthesis, see: Yang et al. (2005 ▶).

Experimental

Crystal data

C28H30ClNO2 M = 447.98 Orthorhombic, a = 8.8038 (8) Å b = 11.3417 (10) Å c = 25.485 (2) Å V = 2544.7 (4) Å3 Z = 4 Mo Kα radiation μ = 0.17 mm−1 T = 298 K 0.24 × 0.16 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.960, T max = 0.980 13334 measured reflections 4452 independent reflections 2845 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.186 S = 1.05 4452 reflections 290 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.37 e Å−3 Absolute structure: Flack (1983 ▶), 1871 Friedel pairs Flack parameter: 0.04 (16) Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809044808/xu2646sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809044808/xu2646Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H30ClNO2F(000) = 952
Mr = 447.98Dx = 1.169 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2267 reflections
a = 8.8038 (8) Åθ = 2.5–19.1°
b = 11.3417 (10) ŵ = 0.17 mm1
c = 25.485 (2) ÅT = 298 K
V = 2544.7 (4) Å3Block, colourless
Z = 40.24 × 0.16 × 0.12 mm
Bruker SMART CCD area-detector diffractometer4452 independent reflections
Radiation source: fine-focus sealed tube2845 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 25.1°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→10
Tmin = 0.960, Tmax = 0.980k = −12→13
13334 measured reflectionsl = −26→30
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.060H-atom parameters constrained
wR(F2) = 0.186w = 1/[σ2(Fo2) + (0.1097P)2] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
4452 reflectionsΔρmax = 0.33 e Å3
290 parametersΔρmin = −0.36 e Å3
0 restraintsAbsolute structure: Flack (1983), 1871 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.04 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.8441 (4)1.17857 (19)0.06402 (7)0.1811 (11)
O10.2924 (3)0.8872 (3)0.12767 (13)0.0864 (9)
H10.20200.90410.12560.130*
O21.0028 (3)0.9464 (3)0.13070 (14)0.0927 (10)
N10.7501 (3)0.9350 (2)0.13768 (11)0.0520 (7)
C10.3627 (4)0.9125 (3)0.08087 (15)0.0626 (9)
C20.5208 (3)0.9060 (3)0.08034 (14)0.0536 (9)
C30.5941 (4)0.9335 (3)0.03418 (15)0.0628 (10)
H30.69960.92970.03330.075*
C40.5179 (5)0.9666 (4)−0.01089 (15)0.0746 (12)
C50.3620 (6)0.9721 (4)−0.00895 (17)0.0834 (13)
H50.30810.9942−0.03870.100*
C60.2852 (4)0.9457 (4)0.03610 (19)0.0769 (12)
H60.17970.95010.03660.092*
C70.6058 (8)0.9962 (6)−0.06040 (18)0.125 (2)
H7A0.69820.9512−0.06130.188*
H7B0.62971.0788−0.06070.188*
H7C0.54530.9773−0.09060.188*
C80.6007 (3)0.8750 (3)0.13155 (14)0.0512 (8)
H80.53650.90940.15900.061*
C90.6029 (4)0.7431 (4)0.14369 (18)0.0672 (11)
C100.5359 (5)0.6629 (4)0.1108 (3)0.0967 (16)
H100.49090.68910.07990.116*
C110.5336 (7)0.5430 (5)0.1227 (4)0.127 (2)
H110.48500.49060.10030.152*
C120.6012 (8)0.5029 (6)0.1664 (4)0.135 (3)
H120.60320.42240.17330.162*
C130.6684 (7)0.5812 (6)0.2016 (3)0.121 (2)
H130.71330.55340.23220.146*
C140.6677 (5)0.7034 (5)0.1903 (2)0.0923 (14)
H140.71020.75680.21390.111*
C150.8845 (4)0.8931 (4)0.12091 (16)0.0655 (10)
C160.8935 (4)0.7808 (4)0.0899 (2)0.0860 (14)
H16A0.97200.78750.06390.129*
H16B0.79790.76660.07290.129*
H16C0.91620.71630.11300.129*
C170.7476 (4)1.0531 (3)0.16311 (13)0.0566 (8)
H170.84681.08920.15640.068*
C180.6322 (6)1.1299 (4)0.13737 (15)0.0781 (12)
C190.6669 (10)1.1861 (4)0.0904 (2)0.127 (2)
C200.5516 (12)1.2498 (6)0.0618 (3)0.149 (2)
H200.57301.28800.03040.179*
C210.4125 (12)1.2510 (7)0.0828 (4)0.156 (3)
H210.33631.28900.06400.187*
C220.3740 (9)1.2019 (6)0.1287 (4)0.152 (3)
H220.27551.20790.14160.182*
C230.4846 (6)1.1424 (5)0.1564 (3)0.1053 (17)
H230.45991.10950.18870.126*
C240.7295 (5)1.0460 (4)0.22294 (17)0.0842 (12)
H240.63171.00950.23160.101*
C250.8582 (7)0.9781 (6)0.24986 (19)0.1152 (16)
H25A0.82330.89970.25910.138*
H25B0.94320.97010.22590.138*
C260.9037 (9)1.0362 (7)0.2938 (3)0.150 (2)
H26A1.01371.03560.29580.180*
H26B0.86460.99590.32460.180*
C270.8506 (8)1.1554 (7)0.2936 (2)0.1364 (19)
H27A0.93551.20910.28930.164*
H27B0.80081.17330.32660.164*
C280.7391 (7)1.1699 (5)0.24837 (19)0.1022 (14)
H28A0.77591.22760.22330.123*
H28B0.64041.19480.26110.123*
U11U22U33U12U13U23
Cl10.303 (3)0.1376 (15)0.1031 (11)−0.0737 (18)0.0624 (16)0.0110 (10)
O10.0368 (13)0.119 (3)0.103 (2)0.0043 (13)0.0143 (14)0.021 (2)
O20.0339 (12)0.114 (2)0.130 (3)−0.0049 (14)0.0073 (15)−0.034 (2)
N10.0335 (12)0.0595 (17)0.0629 (16)0.0023 (12)−0.0005 (13)−0.0064 (13)
C10.0391 (18)0.074 (2)0.075 (2)−0.0015 (17)0.0032 (18)0.0019 (19)
C20.0383 (17)0.056 (2)0.067 (2)−0.0048 (14)0.0028 (15)−0.0060 (16)
C30.053 (2)0.071 (2)0.065 (2)−0.0095 (17)0.0037 (18)−0.0108 (18)
C40.080 (3)0.084 (3)0.060 (2)−0.031 (2)0.003 (2)−0.009 (2)
C50.091 (3)0.087 (3)0.071 (3)−0.012 (3)−0.024 (3)−0.003 (2)
C60.049 (2)0.088 (3)0.093 (3)−0.0030 (19)−0.020 (2)−0.005 (2)
C70.149 (5)0.164 (6)0.063 (3)−0.065 (4)0.003 (3)0.010 (3)
C80.0328 (15)0.057 (2)0.064 (2)0.0000 (13)0.0049 (15)0.0002 (16)
C90.0408 (17)0.060 (2)0.101 (3)−0.0027 (16)0.0080 (19)0.008 (2)
C100.073 (3)0.066 (3)0.151 (5)−0.008 (2)0.007 (3)−0.002 (3)
C110.109 (4)0.060 (3)0.212 (7)−0.004 (3)0.001 (5)−0.004 (4)
C120.109 (5)0.074 (4)0.221 (8)0.019 (4)0.044 (5)0.028 (5)
C130.103 (4)0.103 (5)0.157 (6)0.023 (4)0.021 (4)0.058 (5)
C140.075 (3)0.093 (4)0.109 (3)0.009 (2)0.010 (3)0.030 (3)
C150.0380 (19)0.079 (3)0.080 (2)0.0035 (18)0.0028 (17)−0.008 (2)
C160.049 (2)0.093 (3)0.116 (3)0.013 (2)0.022 (2)−0.024 (3)
C170.0516 (18)0.060 (2)0.058 (2)0.0015 (18)−0.0008 (17)−0.0073 (16)
C180.113 (3)0.055 (2)0.066 (2)0.020 (2)−0.028 (2)−0.0157 (19)
C190.227 (6)0.063 (3)0.091 (3)0.020 (4)−0.053 (4)−0.011 (3)
C200.237 (7)0.098 (4)0.111 (4)0.032 (5)−0.063 (5)−0.011 (3)
C210.215 (7)0.099 (4)0.153 (6)0.060 (5)−0.088 (6)−0.031 (4)
C220.152 (5)0.115 (5)0.187 (6)0.066 (4)−0.051 (5)−0.060 (4)
C230.085 (3)0.088 (3)0.143 (4)0.044 (3)−0.048 (3)−0.046 (3)
C240.082 (3)0.106 (3)0.065 (2)0.003 (2)−0.019 (2)−0.016 (2)
C250.129 (4)0.132 (4)0.084 (3)0.010 (3)−0.048 (3)−0.006 (3)
C260.147 (4)0.177 (5)0.126 (4)0.022 (4)−0.053 (3)−0.028 (4)
C270.133 (4)0.156 (4)0.120 (3)0.000 (4)−0.044 (3)−0.042 (3)
C280.102 (3)0.126 (3)0.078 (3)0.010 (3)−0.015 (3)−0.037 (3)
Cl1—C191.701 (9)C14—H140.9300
O1—C11.374 (5)C15—C161.501 (6)
O1—H10.8200C16—H16A0.9600
O2—C151.230 (4)C16—H16B0.9600
N1—C151.345 (4)C16—H16C0.9600
N1—C171.488 (4)C17—C181.490 (5)
N1—C81.489 (4)C17—C241.535 (6)
C1—C61.382 (6)C17—H170.9800
C1—C21.394 (5)C18—C191.391 (8)
C2—C31.377 (5)C18—C231.394 (7)
C2—C81.524 (5)C19—C201.443 (9)
C3—C41.382 (6)C20—C211.337 (12)
C3—H30.9300C20—H200.9300
C4—C51.374 (7)C21—C221.340 (11)
C4—C71.518 (6)C21—H210.9300
C5—C61.366 (6)C22—C231.379 (9)
C5—H50.9300C22—H220.9300
C6—H60.9300C23—H230.9300
C7—H7A0.9600C24—C251.532 (7)
C7—H7B0.9600C24—C281.550 (7)
C7—H7C0.9600C24—H240.9800
C8—C91.528 (5)C25—C261.361 (8)
C8—H80.9800C25—H25A0.9700
C9—C101.370 (7)C25—H25B0.9700
C9—C141.394 (6)C26—C271.430 (10)
C10—C111.393 (8)C26—H26A0.9700
C10—H100.9300C26—H26B0.9700
C11—C121.343 (11)C27—C281.523 (8)
C11—H110.9300C27—H27A0.9700
C12—C131.394 (10)C27—H27B0.9700
C12—H120.9300C28—H28A0.9700
C13—C141.415 (8)C28—H28B0.9700
C13—H130.9300
C1—O1—H1109.5C15—C16—H16C109.5
C15—N1—C17118.0 (3)H16A—C16—H16C109.5
C15—N1—C8125.6 (3)H16B—C16—H16C109.5
C17—N1—C8116.3 (2)N1—C17—C18110.2 (3)
O1—C1—C6123.5 (3)N1—C17—C24112.8 (3)
O1—C1—C2116.6 (3)C18—C17—C24113.4 (3)
C6—C1—C2119.9 (4)N1—C17—H17106.7
C3—C2—C1117.7 (3)C18—C17—H17106.7
C3—C2—C8124.6 (3)C24—C17—H17106.7
C1—C2—C8117.7 (3)C19—C18—C23117.2 (5)
C2—C3—C4122.9 (3)C19—C18—C17119.8 (5)
C2—C3—H3118.5C23—C18—C17122.8 (4)
C4—C3—H3118.5C18—C19—C20120.6 (8)
C5—C4—C3117.9 (4)C18—C19—Cl1121.2 (5)
C5—C4—C7122.0 (4)C20—C19—Cl1118.1 (6)
C3—C4—C7120.2 (4)C21—C20—C19116.6 (8)
C6—C5—C4121.0 (4)C21—C20—H20121.7
C6—C5—H5119.5C19—C20—H20121.7
C4—C5—H5119.5C20—C21—C22125.2 (8)
C5—C6—C1120.6 (4)C20—C21—H21117.4
C5—C6—H6119.7C22—C21—H21117.4
C1—C6—H6119.7C21—C22—C23118.2 (8)
C4—C7—H7A109.5C21—C22—H22120.9
C4—C7—H7B109.5C23—C22—H22120.9
H7A—C7—H7B109.5C22—C23—C18122.0 (7)
C4—C7—H7C109.5C22—C23—H23119.0
H7A—C7—H7C109.5C18—C23—H23119.0
H7B—C7—H7C109.5C25—C24—C17113.2 (4)
N1—C8—C2113.1 (3)C25—C24—C28103.2 (4)
N1—C8—C9114.5 (3)C17—C24—C28111.2 (4)
C2—C8—C9113.9 (3)C25—C24—H24109.7
N1—C8—H8104.6C17—C24—H24109.7
C2—C8—H8104.6C28—C24—H24109.7
C9—C8—H8104.6C26—C25—C24110.1 (5)
C10—C9—C14118.9 (4)C26—C25—H25A109.6
C10—C9—C8121.4 (4)C24—C25—H25A109.6
C14—C9—C8119.6 (4)C26—C25—H25B109.6
C9—C10—C11121.4 (6)C24—C25—H25B109.6
C9—C10—H10119.3H25A—C25—H25B108.2
C11—C10—H10119.3C25—C26—C27111.0 (6)
C12—C11—C10120.3 (7)C25—C26—H26A109.4
C12—C11—H11119.8C27—C26—H26A109.4
C10—C11—H11119.8C25—C26—H26B109.4
C11—C12—C13120.4 (6)C27—C26—H26B109.4
C11—C12—H12119.8H26A—C26—H26B108.0
C13—C12—H12119.8C26—C27—C28108.4 (5)
C12—C13—C14119.5 (6)C26—C27—H27A110.0
C12—C13—H13120.3C28—C27—H27A110.0
C14—C13—H13120.3C26—C27—H27B110.0
C9—C14—C13119.4 (6)C28—C27—H27B110.0
C9—C14—H14120.3H27A—C27—H27B108.4
C13—C14—H14120.3C27—C28—C24104.7 (4)
O2—C15—N1120.4 (3)C27—C28—H28A110.8
O2—C15—C16118.6 (3)C24—C28—H28A110.8
N1—C15—C16120.9 (3)C27—C28—H28B110.8
C15—C16—H16A109.5C24—C28—H28B110.8
C15—C16—H16B109.5H28A—C28—H28B108.9
H16A—C16—H16B109.5
O1—C1—C2—C3−178.6 (3)C8—N1—C15—O2−175.7 (4)
C6—C1—C2—C3−0.1 (5)C17—N1—C15—C16−173.5 (4)
O1—C1—C2—C8−1.6 (5)C8—N1—C15—C164.4 (6)
C6—C1—C2—C8176.9 (3)C15—N1—C17—C18127.5 (4)
C1—C2—C3—C4−0.1 (6)C8—N1—C17—C18−50.6 (4)
C8—C2—C3—C4−176.9 (3)C15—N1—C17—C24−104.7 (4)
C2—C3—C4—C50.1 (6)C8—N1—C17—C2477.2 (4)
C2—C3—C4—C7179.8 (4)N1—C17—C18—C19−80.3 (5)
C3—C4—C5—C60.0 (7)C24—C17—C18—C19152.2 (4)
C7—C4—C5—C6−179.7 (5)N1—C17—C18—C2395.1 (4)
C4—C5—C6—C1−0.1 (7)C24—C17—C18—C23−32.4 (5)
O1—C1—C6—C5178.6 (4)C23—C18—C19—C20−2.8 (7)
C2—C1—C6—C50.2 (6)C17—C18—C19—C20172.9 (5)
C15—N1—C8—C2−89.0 (4)C23—C18—C19—Cl1179.0 (4)
C17—N1—C8—C288.9 (3)C17—C18—C19—Cl1−5.3 (6)
C15—N1—C8—C943.7 (5)C18—C19—C20—C21−0.2 (9)
C17—N1—C8—C9−138.3 (3)Cl1—C19—C20—C21178.1 (6)
C3—C2—C8—N130.9 (5)C19—C20—C21—C222.6 (12)
C1—C2—C8—N1−145.9 (3)C20—C21—C22—C23−1.8 (12)
C3—C2—C8—C9−102.2 (4)C21—C22—C23—C18−1.5 (9)
C1—C2—C8—C981.0 (4)C19—C18—C23—C223.7 (7)
N1—C8—C9—C10−133.2 (4)C17—C18—C23—C22−171.8 (5)
C2—C8—C9—C10−0.9 (5)N1—C17—C24—C2560.2 (5)
N1—C8—C9—C1449.9 (5)C18—C17—C24—C25−173.7 (4)
C2—C8—C9—C14−177.7 (3)N1—C17—C24—C28175.9 (3)
C14—C9—C10—C11−1.1 (7)C18—C17—C24—C28−58.1 (5)
C8—C9—C10—C11−177.9 (4)C17—C24—C25—C26136.6 (6)
C9—C10—C11—C12−1.7 (9)C28—C24—C25—C2616.2 (7)
C10—C11—C12—C132.9 (10)C24—C25—C26—C27−16.4 (10)
C11—C12—C13—C14−1.4 (10)C25—C26—C27—C289.3 (10)
C10—C9—C14—C132.6 (7)C26—C27—C28—C241.3 (8)
C8—C9—C14—C13179.5 (4)C25—C24—C28—C27−9.9 (6)
C12—C13—C14—C9−1.4 (8)C17—C24—C28—C27−131.6 (5)
C17—N1—C15—O26.4 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.821.822.637 (3)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O2i0.821.822.637 (3)172

Symmetry code: (i) .

  5 in total

1.  N-[(R)-1-(2-hydroxy-5-methylphenyl)ethyl]-N-[(R)-1-(2-methoxy-5-methylphenyl)-2-phenylethyl]aminium chloride.

Authors:  Xiao-Feng Yang; Guang-You Zhang; Yan Zhang; Jin-Yan Zhao; Xiang-Bo Wang
Journal:  Acta Crystallogr C       Date:  2005-03-25       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Biological activity of palladium(II) and platinum(II) complexes of the acetone Schiff bases of S-methyl- and S-benzyldithiocarbazate and the X-ray crystal structure of the [Pd(asme)2] (asme=anionic form of the acetone Schiff base of S-methyldithiocarbazate) complex.

Authors:  Mohammad Akbar Ali; Aminul Huq Mirza; Raymond J Butcher; M T H Tarafder; Tan Boon Keat; A Manaf Ali
Journal:  J Inorg Biochem       Date:  2002-11-25       Impact factor: 4.155

4.  Abacavir prodrugs: microwave-assisted synthesis and their evaluation of anti-HIV activities.

Authors:  Dharmarajan Sriram; Perumal Yogeeswari; Naga Sirisha Myneedu; Vivek Saraswat
Journal:  Bioorg Med Chem Lett       Date:  2006-02-03       Impact factor: 2.823

5.  {6,6'-Dieth-oxy-2,2'-[2,2-dimethyl-propane-1,3-diylbis(nitrilo-methyl-idyne)]diphenolato}nickel(II) monohydrate.

Authors:  Hadi Kargar; Arezoo Jamshidvand; Hoong-Kun Fun; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-14
  5 in total

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