Literature DB >> 21578504

Trimethyl 5-(2-chloro-4-fluoro-phen-yl)-2-phenyl-pyrrolidine-2,3,4-tricarboxyl-ate.

Long He1, Lian-Mei Chen.   

Abstract

The title compound, C(22)H(21)ClFNO(6), was synthesized by the 1,3-dipolar cyclo-addition reaction of dimethyl maleate, methyl 2-amino-2-phenyl-acetate and 2-chloro-4-fluoro-benzaldehyde. The pyrrolidine ring possesses an envelope conformation and the two benzene rings are oriented at a dihedral angle of 68.28 (7)°. Weak inter-molecular C-H⋯O hydrogen bonding is present in the crystal structure. One methyl group is disordered over two positions with a site-occupancy ratio of 0.651 (12):0.349 (12).

Entities:  

Year:  2009        PMID: 21578504      PMCID: PMC2971169          DOI: 10.1107/S1600536809044274

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyrrolidine derivatives, see: Coldham & Hufton (2005 ▶); Nair & Suja (2007 ▶); Pandey et al. (2006 ▶); Sardina & Rapoport (1996 ▶); Witherup et al. (1995 ▶). For a related structure, see: Yu et al. (2007 ▶).

Experimental

Crystal data

C22H21ClFNO6 M = 449.85 Orthorhombic, a = 9.474 (3) Å b = 15.057 (8) Å c = 15.182 (5) Å V = 2165.7 (15) Å3 Z = 4 Cu Kα radiation μ = 1.98 mm−1 T = 298 K 0.38 × 0.36 × 0.03 mm

Data collection

Oxford Diffraction Gemini S Ultra diffractometer Absorption correction: multi-scan (CrysAlis Pro; Oxford Diffraction, 2009 ▶) T min = 0.520, T max = 0.943 32943 measured reflections 3442 independent reflections 3332 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.060 S = 1.05 3442 reflections 290 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), 1456 Friedel pairs Flack parameter: −0.001 (11) Data collection: CrysAlis Pro (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809044274/xu2655sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809044274/xu2655Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H21ClFNO6F(000) = 936
Mr = 449.85Dx = 1.380 Mg m3
Orthorhombic, P212121Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2ac 2abCell parameters from 23516 reflections
a = 9.474 (3) Åθ = 2.9–62.8°
b = 15.057 (8) ŵ = 1.98 mm1
c = 15.182 (5) ÅT = 298 K
V = 2165.7 (15) Å3Platelet, colourless
Z = 40.38 × 0.36 × 0.03 mm
Oxford Diffraction Gemini S Ultra diffractometer3442 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source3332 reflections with I > 2σ(I)
mirrorRint = 0.025
Detector resolution: 15.9149 pixels mm-1θmax = 62.6°, θmin = 4.1°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −17→17
Tmin = 0.520, Tmax = 0.943l = −17→17
32943 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.024w = 1/[σ2(Fo2) + (0.0318P)2 + 0.3155P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.060(Δ/σ)max = 0.001
S = 1.05Δρmax = 0.12 e Å3
3442 reflectionsΔρmin = −0.16 e Å3
290 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0055 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1456 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.001 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl10.87819 (6)0.40571 (3)0.69190 (3)0.06039 (14)
F11.10815 (14)0.42498 (8)0.39470 (7)0.0789 (4)
O10.64936 (15)0.70388 (7)0.55124 (8)0.0578 (3)
O20.59938 (18)0.55992 (8)0.53671 (8)0.0715 (4)
O30.50206 (14)0.80786 (9)0.73253 (11)0.0735 (4)
O40.41937 (11)0.67622 (8)0.68953 (9)0.0568 (3)
O50.79799 (13)0.86655 (7)0.67762 (8)0.0553 (3)
O60.74501 (13)0.87248 (7)0.82137 (7)0.0509 (3)
N10.89048 (14)0.69866 (8)0.69034 (9)0.0390 (3)
H10.870 (2)0.7278 (11)0.6438 (12)0.047*
C11.0498 (2)0.46980 (13)0.46390 (11)0.0546 (4)
C21.00115 (19)0.42137 (12)0.53368 (11)0.0500 (4)
H21.00940.35980.53500.060*
C30.93922 (17)0.46752 (10)0.60228 (10)0.0417 (4)
C40.92532 (15)0.55915 (10)0.60251 (10)0.0386 (3)
C50.98023 (19)0.60471 (12)0.53049 (11)0.0509 (4)
H50.97450.66640.52930.061*
C61.0431 (2)0.56086 (13)0.46054 (12)0.0588 (5)
H61.07960.59210.41280.071*
C70.85178 (16)0.60535 (9)0.67778 (9)0.0379 (3)
H70.87830.57380.73180.045*
C80.68738 (15)0.60534 (10)0.67347 (10)0.0393 (3)
H80.64910.54730.69020.047*
C90.65018 (15)0.67691 (10)0.74326 (10)0.0390 (3)
H90.62960.64500.79800.047*
C100.79423 (16)0.72962 (10)0.75935 (10)0.0372 (3)
C110.85468 (17)0.70603 (9)0.85036 (10)0.0386 (3)
C120.99477 (17)0.68067 (11)0.86012 (11)0.0468 (4)
H121.05370.67880.81110.056*
C131.0475 (2)0.65805 (12)0.94231 (13)0.0589 (5)
H131.14100.64010.94770.071*
C140.9633 (2)0.66181 (12)1.01602 (12)0.0604 (5)
H140.99920.64641.07100.073*
C150.8256 (2)0.68856 (12)1.00731 (12)0.0565 (5)
H150.76850.69281.05690.068*
C160.77124 (19)0.70915 (11)0.92558 (11)0.0478 (4)
H160.67690.72540.92070.057*
C170.77865 (16)0.83067 (10)0.74725 (11)0.0409 (3)
C180.7123 (2)0.96590 (11)0.81177 (15)0.0666 (5)
H18A0.70120.99220.86900.100*
H18B0.62630.97240.77900.100*
H18C0.78780.99500.78100.100*
C190.51912 (18)0.73007 (12)0.72121 (11)0.0462 (4)
C200.2893 (2)0.71857 (16)0.66086 (19)0.0810 (7)
H20A0.22290.67390.64290.121*
H20B0.30880.75730.61210.121*
H20C0.25020.75240.70860.121*
C210.64215 (18)0.63050 (10)0.58152 (10)0.0442 (4)
C22A0.5863 (10)0.5705 (4)0.4390 (3)0.0813 (19)0.651 (12)
H22A0.67150.55050.41120.122*0.651 (12)
H22B0.57080.63190.42510.122*0.651 (12)
H22C0.50810.53580.41810.122*0.651 (12)
C22B0.5167 (16)0.5848 (8)0.4569 (7)0.0813 (19)0.349 (12)
H22D0.42600.60700.47440.122*0.349 (12)
H22E0.50460.53350.42010.122*0.349 (12)
H22F0.56640.63000.42480.122*0.349 (12)
U11U22U33U12U13U23
Cl10.0909 (3)0.0400 (2)0.0503 (2)0.0019 (2)0.0084 (2)0.00626 (17)
F10.0926 (9)0.0837 (8)0.0604 (6)0.0170 (7)0.0228 (6)−0.0173 (6)
O10.0762 (9)0.0468 (7)0.0505 (7)−0.0035 (6)−0.0099 (6)0.0073 (5)
O20.1081 (12)0.0502 (7)0.0562 (7)−0.0174 (7)−0.0325 (7)0.0010 (6)
O30.0495 (7)0.0544 (8)0.1167 (13)0.0096 (6)−0.0117 (7)−0.0141 (8)
O40.0371 (6)0.0568 (7)0.0766 (8)−0.0006 (5)−0.0088 (6)−0.0026 (7)
O50.0692 (8)0.0449 (6)0.0519 (7)0.0018 (5)0.0049 (6)0.0112 (5)
O60.0651 (8)0.0368 (5)0.0507 (6)0.0065 (5)−0.0016 (6)−0.0044 (5)
N10.0423 (7)0.0352 (6)0.0393 (6)−0.0019 (5)0.0035 (6)−0.0011 (5)
C10.0541 (10)0.0627 (11)0.0468 (10)0.0104 (9)0.0073 (8)−0.0100 (8)
C20.0556 (10)0.0442 (9)0.0502 (9)0.0081 (8)−0.0030 (8)−0.0062 (7)
C30.0452 (9)0.0401 (8)0.0399 (8)0.0012 (7)−0.0021 (7)0.0014 (6)
C40.0372 (8)0.0399 (8)0.0387 (8)0.0003 (6)−0.0026 (6)0.0005 (6)
C50.0582 (10)0.0446 (9)0.0499 (9)0.0028 (8)0.0104 (8)0.0041 (7)
C60.0666 (12)0.0620 (12)0.0478 (10)0.0016 (10)0.0155 (9)0.0046 (8)
C70.0412 (8)0.0349 (7)0.0376 (7)−0.0011 (6)0.0000 (6)0.0004 (6)
C80.0409 (8)0.0351 (7)0.0419 (8)−0.0020 (6)−0.0008 (6)0.0021 (6)
C90.0374 (8)0.0407 (8)0.0389 (8)−0.0026 (7)0.0007 (7)0.0022 (6)
C100.0365 (8)0.0372 (8)0.0380 (8)0.0002 (6)0.0017 (6)0.0001 (6)
C110.0420 (8)0.0329 (7)0.0410 (8)−0.0010 (6)−0.0030 (7)0.0002 (6)
C120.0405 (9)0.0459 (9)0.0541 (10)−0.0006 (7)−0.0036 (7)−0.0052 (7)
C130.0521 (11)0.0548 (10)0.0697 (12)0.0039 (9)−0.0210 (10)0.0005 (9)
C140.0737 (14)0.0547 (11)0.0529 (11)−0.0088 (10)−0.0200 (10)0.0087 (9)
C150.0655 (12)0.0618 (10)0.0421 (9)−0.0092 (9)−0.0007 (8)0.0058 (8)
C160.0450 (9)0.0541 (9)0.0443 (9)0.0005 (7)0.0005 (7)0.0030 (7)
C170.0386 (8)0.0377 (8)0.0465 (9)−0.0006 (6)−0.0021 (7)0.0002 (7)
C180.0837 (13)0.0395 (9)0.0766 (13)0.0132 (9)−0.0060 (12)−0.0070 (9)
C190.0404 (9)0.0466 (10)0.0517 (9)0.0001 (7)0.0018 (7)−0.0010 (7)
C200.0436 (11)0.0816 (15)0.1177 (19)0.0075 (10)−0.0185 (12)−0.0039 (14)
C210.0432 (9)0.0443 (9)0.0450 (8)−0.0014 (7)−0.0051 (7)−0.0002 (7)
C22A0.126 (6)0.070 (2)0.0474 (18)−0.010 (3)−0.027 (2)−0.0089 (17)
C22B0.126 (6)0.070 (2)0.0474 (18)−0.010 (3)−0.027 (2)−0.0089 (17)
Cl1—C31.7469 (16)C8—H80.9800
F1—C11.366 (2)C9—C191.515 (2)
O1—C211.1987 (19)C9—C101.597 (2)
O2—C211.325 (2)C9—H90.9800
O2—C22B1.490 (7)C10—C111.537 (2)
O2—C22A1.497 (4)C10—C171.540 (2)
O3—C191.195 (2)C11—C121.389 (2)
O4—C191.335 (2)C11—C161.390 (2)
O4—C201.454 (2)C12—C131.387 (3)
O5—C171.201 (2)C12—H120.9300
O6—C171.3283 (19)C13—C141.375 (3)
O6—C181.448 (2)C13—H130.9300
N1—C71.4645 (18)C14—C151.371 (3)
N1—C101.465 (2)C14—H140.9300
N1—H10.855 (18)C15—C161.379 (2)
C1—C21.366 (3)C15—H150.9300
C1—C61.373 (3)C16—H160.9300
C2—C31.383 (2)C18—H18A0.9600
C2—H20.9300C18—H18B0.9600
C3—C41.386 (2)C18—H18C0.9600
C4—C51.392 (2)C20—H20A0.9600
C4—C71.508 (2)C20—H20B0.9600
C5—C61.385 (2)C20—H20C0.9600
C5—H50.9300C22A—H22A0.9600
C6—H60.9300C22A—H22B0.9600
C7—C81.559 (2)C22A—H22C0.9600
C7—H70.9800C22B—H22D0.9600
C8—C211.509 (2)C22B—H22E0.9600
C8—C91.552 (2)C22B—H22F0.9600
C21—O2—C22B112.1 (5)C12—C11—C10121.02 (14)
C21—O2—C22A116.7 (3)C16—C11—C10121.26 (14)
C22B—O2—C22A28.9 (4)C13—C12—C11120.50 (17)
C19—O4—C20116.19 (15)C13—C12—H12119.7
C17—O6—C18115.25 (14)C11—C12—H12119.7
C7—N1—C10104.04 (11)C14—C13—C12120.89 (17)
C7—N1—H1109.1 (12)C14—C13—H13119.6
C10—N1—H1106.6 (12)C12—C13—H13119.6
F1—C1—C2117.99 (17)C15—C14—C13119.02 (17)
F1—C1—C6118.91 (17)C15—C14—H14120.5
C2—C1—C6123.10 (16)C13—C14—H14120.5
C1—C2—C3117.32 (16)C14—C15—C16120.55 (18)
C1—C2—H2121.3C14—C15—H15119.7
C3—C2—H2121.3C16—C15—H15119.7
C2—C3—C4122.85 (15)C15—C16—C11121.28 (17)
C2—C3—Cl1117.35 (12)C15—C16—H16119.4
C4—C3—Cl1119.79 (12)C11—C16—H16119.4
C3—C4—C5116.95 (14)O5—C17—O6124.68 (14)
C3—C4—C7120.33 (13)O5—C17—C10122.33 (14)
C5—C4—C7122.72 (14)O6—C17—C10112.97 (13)
C6—C5—C4121.88 (16)O6—C18—H18A109.5
C6—C5—H5119.1O6—C18—H18B109.5
C4—C5—H5119.1H18A—C18—H18B109.5
C1—C6—C5117.86 (17)O6—C18—H18C109.5
C1—C6—H6121.1H18A—C18—H18C109.5
C5—C6—H6121.1H18B—C18—H18C109.5
N1—C7—C4115.18 (12)O3—C19—O4123.47 (16)
N1—C7—C8104.82 (12)O3—C19—C9126.67 (16)
C4—C7—C8115.45 (12)O4—C19—C9109.81 (14)
N1—C7—H7107.0O4—C20—H20A109.5
C4—C7—H7107.0O4—C20—H20B109.5
C8—C7—H7107.0H20A—C20—H20B109.5
C21—C8—C9113.13 (12)O4—C20—H20C109.5
C21—C8—C7108.82 (12)H20A—C20—H20C109.5
C9—C8—C7101.43 (11)H20B—C20—H20C109.5
C21—C8—H8111.0O1—C21—O2124.03 (15)
C9—C8—H8111.0O1—C21—C8124.77 (14)
C7—C8—H8111.0O2—C21—C8111.13 (13)
C19—C9—C8113.72 (13)O2—C22A—H22A109.5
C19—C9—C10118.14 (13)O2—C22A—H22B109.5
C8—C9—C10104.80 (12)H22A—C22A—H22B109.5
C19—C9—H9106.5O2—C22A—H22C109.5
C8—C9—H9106.5H22A—C22A—H22C109.5
C10—C9—H9106.5H22B—C22A—H22C109.5
N1—C10—C11109.71 (12)O2—C22B—H22D109.5
N1—C10—C17106.78 (12)O2—C22B—H22E109.5
C11—C10—C17111.80 (12)H22D—C22B—H22E109.5
N1—C10—C9105.33 (12)O2—C22B—H22F109.5
C11—C10—C9109.94 (12)H22D—C22B—H22F109.5
C17—C10—C9113.00 (12)H22E—C22B—H22F109.5
C12—C11—C16117.72 (15)
F1—C1—C2—C3−178.45 (16)N1—C10—C11—C1214.85 (19)
C6—C1—C2—C31.8 (3)C17—C10—C11—C12−103.41 (16)
C1—C2—C3—C40.0 (3)C9—C10—C11—C12130.23 (15)
C1—C2—C3—Cl1−179.53 (14)N1—C10—C11—C16−165.02 (14)
C2—C3—C4—C5−1.5 (2)C17—C10—C11—C1676.71 (18)
Cl1—C3—C4—C5177.95 (12)C9—C10—C11—C16−49.64 (18)
C2—C3—C4—C7177.68 (14)C16—C11—C12—C131.0 (2)
Cl1—C3—C4—C7−2.8 (2)C10—C11—C12—C13−178.87 (15)
C3—C4—C5—C61.5 (3)C11—C12—C13—C14−1.2 (3)
C7—C4—C5—C6−177.73 (16)C12—C13—C14—C15−0.1 (3)
F1—C1—C6—C5178.39 (17)C13—C14—C15—C161.7 (3)
C2—C1—C6—C5−1.9 (3)C14—C15—C16—C11−1.9 (3)
C4—C5—C6—C10.2 (3)C12—C11—C16—C150.6 (2)
C10—N1—C7—C4173.79 (12)C10—C11—C16—C15−179.57 (15)
C10—N1—C7—C845.80 (14)C18—O6—C17—O58.4 (2)
C3—C4—C7—N1156.57 (14)C18—O6—C17—C10−172.84 (15)
C5—C4—C7—N1−24.3 (2)N1—C10—C17—O524.6 (2)
C3—C4—C7—C8−80.97 (18)C11—C10—C17—O5144.60 (15)
C5—C4—C7—C898.19 (18)C9—C10—C17—O5−90.74 (18)
N1—C7—C8—C2181.72 (14)N1—C10—C17—O6−154.16 (13)
C4—C7—C8—C21−46.10 (17)C11—C10—C17—O6−34.15 (18)
N1—C7—C8—C9−37.78 (14)C9—C10—C17—O690.51 (15)
C4—C7—C8—C9−165.60 (12)C20—O4—C19—O35.6 (3)
C21—C8—C9—C1930.15 (18)C20—O4—C19—C9−176.82 (16)
C7—C8—C9—C19146.52 (13)C8—C9—C19—O3−140.85 (18)
C21—C8—C9—C10−100.31 (14)C10—C9—C19—O3−17.4 (3)
C7—C8—C9—C1016.07 (14)C8—C9—C19—O441.67 (18)
C7—N1—C10—C1184.15 (14)C10—C9—C19—O4165.13 (13)
C7—N1—C10—C17−154.52 (12)C22B—O2—C21—O1−19.4 (7)
C7—N1—C10—C9−34.13 (14)C22A—O2—C21—O112.0 (5)
C19—C9—C10—N1−117.73 (14)C22B—O2—C21—C8163.6 (7)
C8—C9—C10—N110.09 (15)C22A—O2—C21—C8−165.1 (5)
C19—C9—C10—C11124.14 (14)C9—C8—C21—O138.7 (2)
C8—C9—C10—C11−108.04 (13)C7—C8—C21—O1−73.2 (2)
C19—C9—C10—C17−1.53 (19)C9—C8—C21—O2−144.27 (15)
C8—C9—C10—C17126.29 (13)C7—C8—C21—O2103.82 (16)
D—H···AD—HH···AD···AD—H···A
C6—H6···O5i0.932.563.380 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O5i0.932.563.380 (3)147

Symmetry code: (i) .

  4 in total

1.  Enantiospecific Synthesis of Heterocycles from alpha-Amino Acids.

Authors:  F. Javier Sardina; Henry Rapoport
Journal:  Chem Rev       Date:  1996-10-01       Impact factor: 60.622

2.  Intramolecular dipolar cycloaddition reactions of azomethine ylides.

Authors:  Iain Coldham; Richard Hufton
Journal:  Chem Rev       Date:  2005-07       Impact factor: 60.622

3.  Construction of enantiopure pyrrolidine ring system via asymmetric [3+2]-cycloaddition of azomethine ylides.

Authors:  Ganesh Pandey; Prabal Banerjee; Smita R Gadre
Journal:  Chem Rev       Date:  2006-11       Impact factor: 60.622

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  4 in total

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