Literature DB >> 21578494

N-[(3-Phenyl-sulfanyl-1-phenyl-sulfonyl-1H-indol-2-yl)meth-yl]propionamide.

M Umadevi, V Dhayalan, A K Mohanakrishnan, G Chakkaravarthi, V Manivannan.   

Abstract

In the title compound, C(24)H(22)N(2)O(3)S(2), the phenyl rings form dihedral angles of 75.2 (1) and 86.1 (1)° with the indole ring system. The mol-ecular structure is stabilized by intra-molecular C-H⋯O and N-H⋯O hydrogen bonds. The crystal structure exhibit inter-molecular N-H⋯O and C-H⋯O hydrogen bonds, C-H⋯π and π-π [centroid-centroid distance = 3.748 (1) Å] inter-actions.

Entities:  

Year:  2009        PMID: 21578494      PMCID: PMC2971435          DOI: 10.1107/S1600536809041518

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indole derivatives, see: Nieto et al. (2005 ▶); Olgen & Coban (2003 ▶). For related structures, see: Chakkaravarthi et al. (2007 ▶, 2008 ▶).

Experimental

Crystal data

C24H22N2O3S2 M = 450.56 Monoclinic, a = 10.9216 (3) Å b = 23.1856 (6) Å c = 9.4298 (2) Å β = 110.147 (1)° V = 2241.74 (10) Å3 Z = 4 Mo Kα radiation μ = 0.27 mm−1 T = 295 K 0.26 × 0.20 × 0.16 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.934, T max = 0.959 26619 measured reflections 5543 independent reflections 3962 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.117 S = 1.04 5543 reflections 281 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809041518/gw2070sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809041518/gw2070Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H22N2O3S2F(000) = 944
Mr = 450.56Dx = 1.335 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9917 reflections
a = 10.9216 (3) Åθ = 2.5–27.5°
b = 23.1856 (6) ŵ = 0.27 mm1
c = 9.4298 (2) ÅT = 295 K
β = 110.147 (1)°Block, colourless
V = 2241.74 (10) Å30.26 × 0.20 × 0.16 mm
Z = 4
Bruker Kappa APEXII diffractometer5543 independent reflections
Radiation source: fine-focus sealed tube3962 reflections with I > 2σ(I)
graphiteRint = 0.026
ω and φ scansθmax = 28.3°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→14
Tmin = 0.934, Tmax = 0.959k = −30→30
26619 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0466P)2 + 0.7649P] where P = (Fo2 + 2Fc2)/3
5543 reflections(Δ/σ)max < 0.001
281 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.24 e Å3
xyzUiso*/Ueq
C10.35657 (17)0.09160 (9)0.2609 (2)0.0566 (5)
C20.3938 (2)0.03731 (10)0.3194 (3)0.0700 (6)
H20.35480.02030.38240.084*
C30.4893 (2)0.00865 (12)0.2834 (3)0.0863 (8)
H30.5157−0.02790.32260.104*
C40.5455 (2)0.03392 (15)0.1901 (4)0.0951 (9)
H40.61010.01440.16600.114*
C50.5080 (3)0.08729 (16)0.1321 (4)0.1013 (9)
H50.54660.10390.06830.122*
C60.4135 (2)0.11678 (12)0.1672 (3)0.0823 (7)
H60.38820.15340.12800.099*
C70.02638 (16)0.12894 (7)0.03684 (18)0.0424 (4)
C8−0.08307 (16)0.09744 (7)−0.02800 (17)0.0408 (4)
C9−0.08564 (16)0.05099 (7)0.07163 (18)0.0400 (4)
C10−0.17279 (18)0.00610 (8)0.0598 (2)0.0505 (4)
H10−0.24750.0026−0.02520.061*
C11−0.1468 (2)−0.03292 (9)0.1756 (3)0.0603 (5)
H11−0.2040−0.06330.16900.072*
C12−0.0360 (2)−0.02736 (9)0.3024 (2)0.0621 (5)
H12−0.0205−0.05430.37980.075*
C130.0514 (2)0.01642 (9)0.3174 (2)0.0562 (5)
H130.12550.01970.40330.067*
C140.02547 (16)0.05580 (7)0.19997 (18)0.0421 (4)
C15−0.31688 (17)0.15356 (8)−0.1635 (2)0.0486 (4)
C16−0.2896 (2)0.18462 (9)−0.0313 (2)0.0581 (5)
H16−0.20730.18260.04260.070*
C17−0.3848 (3)0.21854 (11)−0.0095 (3)0.0791 (7)
H17−0.36630.23960.07940.095*
C18−0.5068 (3)0.22168 (13)−0.1175 (4)0.0935 (9)
H18−0.57090.2444−0.10130.112*
C19−0.5334 (2)0.19155 (13)−0.2483 (4)0.0920 (8)
H19−0.61560.1942−0.32220.110*
C20−0.4396 (2)0.15706 (10)−0.2721 (3)0.0703 (6)
H20−0.45890.1361−0.36130.084*
C210.0691 (2)0.18028 (8)−0.0289 (2)0.0523 (4)
H21A0.16340.18020.00170.063*
H21B0.03400.1777−0.13820.063*
C22−0.0289 (2)0.27564 (8)−0.0787 (2)0.0547 (5)
C23−0.0686 (3)0.32715 (9)−0.0106 (2)0.0770 (7)
H23A−0.08680.31500.07860.092*
H23B0.00430.35380.02190.092*
C24−0.1833 (3)0.35801 (12)−0.1114 (3)0.0908 (8)
H24A−0.16770.3693−0.20160.136*
H24B−0.19900.3917−0.06100.136*
H24C−0.25810.3331−0.13740.136*
N10.09434 (14)0.10500 (6)0.17978 (16)0.0455 (3)
N20.02720 (17)0.23387 (6)0.01795 (16)0.0538 (4)
H2A0.03910.23890.11210.065*
O10.23581 (16)0.10952 (8)0.44854 (16)0.0793 (5)
O20.24265 (16)0.18788 (7)0.2755 (2)0.0806 (5)
O3−0.04305 (18)0.27293 (7)−0.21278 (15)0.0766 (5)
S10.23448 (5)0.12841 (2)0.30516 (6)0.05906 (16)
S2−0.20032 (5)0.10989 (2)−0.20547 (5)0.05258 (14)
U11U22U33U12U13U23
C10.0413 (9)0.0629 (12)0.0571 (11)−0.0080 (8)0.0062 (8)−0.0097 (9)
C20.0551 (12)0.0777 (15)0.0703 (14)0.0019 (11)0.0128 (10)0.0042 (11)
C30.0606 (14)0.0838 (18)0.105 (2)0.0139 (13)0.0163 (14)−0.0022 (15)
C40.0519 (13)0.119 (2)0.117 (2)0.0048 (15)0.0318 (15)−0.0191 (19)
C50.0679 (16)0.122 (3)0.128 (3)−0.0041 (16)0.0524 (17)0.011 (2)
C60.0575 (13)0.0840 (17)0.108 (2)−0.0058 (12)0.0320 (14)0.0118 (14)
C70.0488 (9)0.0427 (9)0.0380 (8)0.0025 (7)0.0179 (7)−0.0070 (7)
C80.0447 (9)0.0437 (9)0.0352 (8)0.0051 (7)0.0150 (7)−0.0045 (7)
C90.0434 (8)0.0399 (8)0.0405 (8)0.0062 (7)0.0194 (7)−0.0052 (6)
C100.0478 (9)0.0498 (10)0.0569 (10)−0.0007 (8)0.0219 (8)−0.0082 (8)
C110.0690 (13)0.0462 (11)0.0784 (14)0.0009 (9)0.0418 (11)0.0024 (10)
C120.0798 (14)0.0528 (11)0.0636 (12)0.0179 (10)0.0373 (11)0.0167 (9)
C130.0605 (11)0.0618 (12)0.0454 (10)0.0146 (9)0.0169 (8)0.0075 (8)
C140.0443 (9)0.0442 (9)0.0400 (8)0.0073 (7)0.0172 (7)−0.0042 (7)
C150.0503 (9)0.0453 (10)0.0469 (9)0.0041 (8)0.0128 (8)0.0105 (8)
C160.0581 (11)0.0572 (12)0.0567 (11)0.0122 (9)0.0169 (9)0.0004 (9)
C170.0856 (16)0.0702 (15)0.0843 (16)0.0264 (13)0.0331 (14)0.0003 (12)
C180.0784 (17)0.0898 (19)0.114 (2)0.0439 (15)0.0348 (17)0.0238 (17)
C190.0615 (14)0.099 (2)0.099 (2)0.0263 (14)0.0062 (14)0.0286 (17)
C200.0635 (13)0.0708 (14)0.0622 (13)0.0088 (11)0.0034 (10)0.0099 (11)
C210.0637 (11)0.0505 (10)0.0496 (10)−0.0055 (9)0.0284 (9)−0.0068 (8)
C220.0824 (14)0.0484 (10)0.0374 (9)−0.0075 (9)0.0258 (9)−0.0033 (8)
C230.130 (2)0.0541 (12)0.0471 (11)0.0132 (13)0.0308 (13)−0.0022 (9)
C240.119 (2)0.0855 (18)0.0672 (15)0.0240 (16)0.0306 (15)0.0015 (13)
N10.0438 (7)0.0509 (8)0.0388 (7)−0.0017 (6)0.0102 (6)−0.0052 (6)
N20.0867 (12)0.0439 (8)0.0348 (7)−0.0055 (8)0.0259 (8)−0.0049 (6)
O10.0732 (10)0.1127 (13)0.0419 (8)0.0004 (9)0.0070 (7)−0.0195 (8)
O20.0718 (10)0.0555 (9)0.0969 (12)−0.0100 (7)0.0064 (9)−0.0252 (8)
O30.1285 (14)0.0722 (10)0.0369 (7)0.0096 (9)0.0383 (8)0.0020 (6)
S10.0518 (3)0.0646 (3)0.0511 (3)−0.0045 (2)0.0054 (2)−0.0177 (2)
S20.0570 (3)0.0629 (3)0.0337 (2)0.0058 (2)0.01022 (18)−0.00357 (19)
C1—C61.374 (3)C15—C161.380 (3)
C1—C21.378 (3)C15—C201.381 (3)
C1—S11.750 (2)C15—S21.7748 (19)
C2—C31.374 (3)C16—C171.374 (3)
C2—H20.9300C16—H160.9300
C3—C41.366 (4)C17—C181.372 (4)
C3—H30.9300C17—H170.9300
C4—C51.358 (4)C18—C191.358 (4)
C4—H40.9300C18—H180.9300
C5—C61.370 (4)C19—C201.378 (4)
C5—H50.9300C19—H190.9300
C6—H60.9300C20—H200.9300
C7—C81.354 (2)C21—N21.445 (2)
C7—N11.410 (2)C21—H21A0.9700
C7—C211.489 (3)C21—H21B0.9700
C8—C91.436 (2)C22—O31.222 (2)
C8—S21.7457 (16)C22—N21.326 (2)
C9—C101.389 (2)C22—C231.489 (3)
C9—C141.392 (2)C23—C241.472 (3)
C10—C111.370 (3)C23—H23A0.9700
C10—H100.9300C23—H23B0.9700
C11—C121.383 (3)C24—H24A0.9600
C11—H110.9300C24—H24B0.9600
C12—C131.367 (3)C24—H24C0.9600
C12—H120.9300N1—S11.6699 (14)
C13—C141.388 (2)N2—H2A0.8600
C13—H130.9300O1—S11.4165 (17)
C14—N11.415 (2)O2—S11.4159 (17)
C6—C1—C2120.6 (2)C15—C16—H16120.2
C6—C1—S1119.78 (18)C18—C17—C16120.7 (2)
C2—C1—S1119.61 (18)C18—C17—H17119.7
C3—C2—C1119.2 (2)C16—C17—H17119.7
C3—C2—H2120.4C19—C18—C17119.8 (2)
C1—C2—H2120.4C19—C18—H18120.1
C4—C3—C2120.0 (3)C17—C18—H18120.1
C4—C3—H3120.0C18—C19—C20120.5 (2)
C2—C3—H3120.0C18—C19—H19119.7
C5—C4—C3120.6 (3)C20—C19—H19119.7
C5—C4—H4119.7C19—C20—C15120.0 (2)
C3—C4—H4119.7C19—C20—H20120.0
C4—C5—C6120.4 (3)C15—C20—H20120.0
C4—C5—H5119.8N2—C21—C7112.51 (15)
C6—C5—H5119.8N2—C21—H21A109.1
C5—C6—C1119.2 (3)C7—C21—H21A109.1
C5—C6—H6120.4N2—C21—H21B109.1
C1—C6—H6120.4C7—C21—H21B109.1
C8—C7—N1108.15 (15)H21A—C21—H21B107.8
C8—C7—C21126.70 (16)O3—C22—N2122.52 (18)
N1—C7—C21125.15 (15)O3—C22—C23122.38 (18)
C7—C8—C9108.81 (14)N2—C22—C23115.06 (16)
C7—C8—S2125.86 (14)C24—C23—C22114.89 (19)
C9—C8—S2125.31 (13)C24—C23—H23A108.5
C10—C9—C14119.86 (16)C22—C23—H23A108.5
C10—C9—C8132.61 (16)C24—C23—H23B108.5
C14—C9—C8107.52 (15)C22—C23—H23B108.5
C11—C10—C9118.87 (18)H23A—C23—H23B107.5
C11—C10—H10120.6C23—C24—H24A109.5
C9—C10—H10120.6C23—C24—H24B109.5
C10—C11—C12120.43 (19)H24A—C24—H24B109.5
C10—C11—H11119.8C23—C24—H24C109.5
C12—C11—H11119.8H24A—C24—H24C109.5
C13—C12—C11122.05 (18)H24B—C24—H24C109.5
C13—C12—H12119.0C7—N1—C14108.48 (13)
C11—C12—H12119.0C7—N1—S1126.97 (12)
C12—C13—C14117.57 (18)C14—N1—S1124.54 (12)
C12—C13—H13121.2C22—N2—C21122.54 (15)
C14—C13—H13121.2C22—N2—H2A118.7
C13—C14—C9121.21 (17)C21—N2—H2A118.7
C13—C14—N1131.79 (16)O2—S1—O1120.59 (11)
C9—C14—N1107.00 (14)O2—S1—N1106.35 (9)
C16—C15—C20119.43 (19)O1—S1—N1106.31 (9)
C16—C15—S2123.45 (14)O2—S1—C1108.84 (11)
C20—C15—S2117.10 (16)O1—S1—C1108.57 (10)
C17—C16—C15119.7 (2)N1—S1—C1105.10 (8)
C17—C16—H16120.2C8—S2—C15103.06 (8)
C6—C1—C2—C30.3 (3)C16—C15—C20—C190.3 (3)
S1—C1—C2—C3179.69 (18)S2—C15—C20—C19−178.15 (19)
C1—C2—C3—C4−0.4 (4)C8—C7—C21—N293.9 (2)
C2—C3—C4—C50.0 (4)N1—C7—C21—N2−85.7 (2)
C3—C4—C5—C60.4 (5)O3—C22—C23—C2432.6 (4)
C4—C5—C6—C1−0.4 (5)N2—C22—C23—C24−149.7 (2)
C2—C1—C6—C50.0 (4)C8—C7—N1—C142.10 (18)
S1—C1—C6—C5−179.3 (2)C21—C7—N1—C14−178.23 (15)
N1—C7—C8—C9−1.67 (18)C8—C7—N1—S1−179.39 (12)
C21—C7—C8—C9178.66 (16)C21—C7—N1—S10.3 (2)
N1—C7—C8—S2179.76 (12)C13—C14—N1—C7178.38 (18)
C21—C7—C8—S20.1 (3)C9—C14—N1—C7−1.68 (17)
C7—C8—C9—C10−178.64 (17)C13—C14—N1—S1−0.2 (3)
S2—C8—C9—C10−0.1 (3)C9—C14—N1—S1179.76 (12)
C7—C8—C9—C140.63 (18)O3—C22—N2—C21−3.8 (3)
S2—C8—C9—C14179.21 (12)C23—C22—N2—C21178.51 (19)
C14—C9—C10—C11−0.3 (2)C7—C21—N2—C22−132.61 (19)
C8—C9—C10—C11178.90 (17)C7—N1—S1—O225.25 (18)
C9—C10—C11—C120.4 (3)C14—N1—S1—O2−156.46 (14)
C10—C11—C12—C13−0.2 (3)C7—N1—S1—O1154.92 (15)
C11—C12—C13—C14−0.1 (3)C14—N1—S1—O1−26.79 (16)
C12—C13—C14—C90.2 (3)C7—N1—S1—C1−90.08 (16)
C12—C13—C14—N1−179.87 (18)C14—N1—S1—C188.21 (15)
C10—C9—C14—C130.0 (2)C6—C1—S1—O2−19.4 (2)
C8—C9—C14—C13−179.39 (15)C2—C1—S1—O2161.21 (16)
C10—C9—C14—N1−179.96 (14)C6—C1—S1—O1−152.42 (18)
C8—C9—C14—N10.66 (17)C2—C1—S1—O128.22 (19)
C20—C15—C16—C170.0 (3)C6—C1—S1—N194.15 (19)
S2—C15—C16—C17178.35 (17)C2—C1—S1—N1−85.20 (17)
C15—C16—C17—C180.2 (4)C7—C8—S2—C15−93.53 (16)
C16—C17—C18—C19−0.8 (4)C9—C8—S2—C1588.13 (15)
C17—C18—C19—C201.1 (5)C16—C15—S2—C820.21 (18)
C18—C19—C20—C15−0.9 (4)C20—C15—S2—C8−161.43 (16)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O20.862.522.939 (2)111
C6—H6···O20.932.572.925 (3)103
C13—H13···O10.932.372.921 (3)118
C21—H21A···O20.972.432.849 (3)106
C21—H21B···O30.972.382.767 (2)103
C18—H18···O2i0.932.523.317 (3)144
N2—H2A···O3ii0.862.152.899 (2)145
C16—H16···O3ii0.932.603.416 (3)147
C10—H10···Cg2iii0.932.813.658 (2)152
C5—H5···Cg4iv0.932.913.788 (4)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O20.862.522.939 (2)111
C13—H13⋯O10.932.372.921 (3)118
C18—H18⋯O2i0.932.523.317 (3)144
N2—H2A⋯O3ii0.862.152.899 (2)145
C16—H16⋯O3ii0.932.603.416 (3)147
C10—H10⋯Cg2iii0.932.813.658 (2)152
C5—H5⋯Cg4iv0.932.913.788 (4)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg2 and Cg4 are the centroids of C1–C6 and C15–C20 rings, respectively.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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