Literature DB >> 21578466

5-Nitro-2-(piperidin-1-yl)benzaldehyde.

A J N'gouan, F Mansilla-Koblavi, A Timotou, A Adjou, N Ebby.   

Abstract

In the structure of the title compound, C(12)H(14)N(2)O(3), the piperidine ring adopts a chair conformation and the aryl substitutent occupies an equatorial position.

Entities:  

Year:  2009        PMID: 21578466      PMCID: PMC2971290          DOI: 10.1107/S1600536809043700

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the toxicity of nitro­aromatics, see: Cronin et al. (1998 ▶); Shinoda et al. (1998 ▶). For piperidine ring conformations, see: Parkin et al. (2004 ▶). For ring conformational analysis, see: Cremer & Pople (1975 ▶). For reference bond lengths, see: Allen et al. (1987 ▶) and for bond angles, see; Codding & Kerr (1978 ▶).

Experimental

Crystal data

C12H14N2O3 M = 234.25 Triclinic, a = 5.686 (2) Å b = 10.102 (5) Å c = 10.221 (4) Å α = 80.767 (2)° β = 80.733 (3)° γ = 86.034 (2)° V = 571.4 (4) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.30 × 0.25 × 0.25 mm

Data collection

Nonius KappaCCCD area-detector diffractometer Absorption correction: none 11460 measured reflections 3280 independent reflections 2239 reflections with I > 2.0σ(I) R int = 0.03

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.111 S = 1.02 2058 reflections 154 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.15 e Å−3 Data collection: COLLECT (Nonius, 1997 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809043700/ng2664sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043700/ng2664Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N2O3Z = 2
Mr = 234.25F(000) = 248
Triclinic, P1Dx = 1.362 Mg m3
Hall symbol: -P 1Melting point: 388 K
a = 5.686 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.102 (5) ÅCell parameters from 3280 reflections
c = 10.221 (4) Åθ = 2–30°
α = 80.767 (2)°µ = 0.10 mm1
β = 80.733 (3)°T = 295 K
γ = 86.034 (2)°Prism, orange
V = 571.4 (4) Å30.30 × 0.25 × 0.25 mm
Nonius KappaCCCD area detector diffractometerRint = 0.03
graphiteθmax = 30.2°, θmin = 2.0°
φ scansh = 0→8
11460 measured reflectionsk = −14→14
3280 independent reflectionsl = −13→14
2239 reflections with I > 2.0σ(I)
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.111 Method = Modified Sheldrick w = 1/[σ2(F2) + ( 0.06P)2 + 0.1P] , where P = (max(Fo2,0) + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.0004
2058 reflectionsΔρmax = 0.16 e Å3
154 parametersΔρmin = −0.15 e Å3
0 restraints
Refinement. We had 3280 independent reflections but 2058 reflections were used in the refinement, instead of 3280 because the refinement was carried out under conditions I > 3σ(I).
xyzUiso*/Ueq
N1−0.2540 (2)−0.19297 (12)0.65442 (13)0.0538
N20.1530 (2)0.26552 (11)0.75678 (11)0.0494
C1−0.1479 (2)−0.07454 (13)0.68028 (13)0.0446
C20.0235 (2)−0.08957 (12)0.76296 (12)0.0437
C30.1255 (2)0.02260 (12)0.78871 (12)0.0421
C40.0534 (2)0.15293 (12)0.73040 (12)0.0428
C5−0.1174 (3)0.16295 (13)0.64329 (14)0.0514
C6−0.2181 (3)0.05102 (14)0.61906 (14)0.0516
C70.3268 (3)−0.00219 (15)0.86587 (14)0.0530
C80.1313 (3)0.28678 (15)0.89744 (13)0.0539
C90.3194 (3)0.37797 (17)0.91473 (16)0.0665
C100.3053 (4)0.51042 (17)0.82255 (17)0.0676
C110.3178 (3)0.48655 (15)0.67935 (16)0.0630
C120.1293 (3)0.39255 (14)0.66607 (15)0.0573
O1−0.1742 (2)−0.30357 (10)0.69841 (14)0.0772
O2−0.4183 (2)−0.17831 (12)0.58925 (14)0.0796
O30.3735 (2)−0.10961 (12)0.92869 (13)0.0761
H20.0775−0.17700.80030.0524*
H5−0.16910.24820.60130.0617*
H6−0.33660.06040.56080.0619*
H70.42640.07060.86200.0636*
H810.14230.19920.95490.0647*
H82−0.02580.32950.92320.0647*
H910.30190.39011.00890.0798*
H920.47120.33360.89260.0798*
H1010.42890.56450.82980.0812*
H1020.15070.55720.85150.0812*
H1110.29520.57120.62060.0756*
H1120.47500.44650.65030.0756*
H121−0.03160.43280.68800.0688*
H1220.14620.37340.57380.0688*
U11U22U33U12U13U23
N10.0571 (7)0.0479 (7)0.0585 (7)−0.0037 (5)−0.0156 (6)−0.0069 (5)
N20.0716 (8)0.0387 (5)0.0387 (5)−0.0033 (5)−0.0132 (5)−0.0032 (4)
C10.0483 (7)0.0414 (7)0.0447 (7)−0.0017 (5)−0.0089 (5)−0.0067 (5)
C20.0490 (7)0.0396 (6)0.0400 (6)0.0018 (5)−0.0067 (5)−0.0001 (5)
C30.0477 (7)0.0415 (6)0.0365 (6)−0.0001 (5)−0.0085 (5)−0.0023 (5)
C40.0519 (7)0.0396 (6)0.0361 (6)0.0001 (5)−0.0066 (5)−0.0043 (5)
C50.0636 (9)0.0401 (7)0.0508 (7)0.0056 (6)−0.0187 (6)−0.0011 (5)
C60.0570 (8)0.0492 (7)0.0510 (7)0.0025 (6)−0.0204 (6)−0.0044 (6)
C70.0565 (8)0.0502 (8)0.0527 (8)−0.0027 (6)−0.0168 (6)−0.0006 (6)
C80.0693 (9)0.0528 (8)0.0409 (7)−0.0078 (7)−0.0078 (6)−0.0093 (6)
C90.0804 (11)0.0674 (10)0.0576 (9)−0.0135 (8)−0.0267 (8)−0.0066 (8)
C100.0807 (11)0.0571 (9)0.0718 (10)−0.0192 (8)−0.0251 (9)−0.0094 (8)
C110.0770 (11)0.0475 (8)0.0622 (9)−0.0086 (7)−0.0112 (8)0.0018 (7)
C120.0848 (11)0.0394 (7)0.0501 (8)−0.0030 (7)−0.0215 (7)−0.0026 (6)
O10.0870 (8)0.0420 (6)0.1096 (10)−0.0025 (5)−0.0414 (7)−0.0056 (6)
O20.0848 (8)0.0650 (7)0.1011 (10)−0.0102 (6)−0.0519 (8)−0.0082 (7)
O30.0848 (8)0.0595 (7)0.0874 (9)−0.0029 (6)−0.0478 (7)0.0128 (6)
N1—O11.2210 (16)C1—C61.3839 (19)
N1—C11.4553 (18)C6—H610.959
N1—O21.2195 (16)C8—C91.507 (2)
C3—C41.4174 (17)C8—H810.984
C3—C21.3878 (19)C8—H820.980
C3—C71.4773 (19)C12—C111.516 (2)
C4—N21.3868 (17)C12—H1220.981
C4—C51.4081 (19)C12—H1210.982
N2—C81.4720 (18)C9—C101.513 (2)
N2—C121.4694 (17)C9—H920.956
C5—C61.376 (2)C9—H910.978
C5—H510.949C11—C101.511 (2)
C2—C11.3750 (19)C11—H1120.977
C2—H210.955C11—H1110.977
C7—O31.2049 (18)C10—H1010.939
C7—H710.951C10—H1020.993
O1—N1—C1118.62 (12)C9—C8—H81111.4
O1—N1—O2122.42 (13)N2—C8—H82108.6
C1—N1—O2118.96 (12)C9—C8—H82108.4
C4—C3—C2120.29 (12)H81—C8—H82108.4
C4—C3—C7122.63 (12)N2—C12—C11109.92 (13)
C2—C3—C7116.75 (12)N2—C12—H122108.8
C3—C4—N2120.58 (12)C11—C12—H122110.7
C3—C4—C5117.61 (12)N2—C12—H121109.0
N2—C4—C5121.79 (12)C11—C12—H121110.9
C4—N2—C8118.01 (11)H122—C12—H121107.5
C4—N2—C12118.40 (11)C8—C9—C10110.77 (14)
C8—N2—C12111.78 (11)C8—C9—H92107.4
C4—C5—C6121.51 (12)C10—C9—H92109.5
C4—C5—H51120.3C8—C9—H91109.3
C6—C5—H51118.1C10—C9—H91112.0
C3—C2—C1119.98 (12)H92—C9—H91107.7
C3—C2—H21119.5C12—C11—C10111.64 (13)
C1—C2—H21120.4C12—C11—H112108.8
C3—C7—O3123.42 (14)C10—C11—H112108.6
C3—C7—H71117.1C12—C11—H111108.5
O3—C7—H71119.4C10—C11—H111110.5
N1—C1—C2119.43 (12)H112—C11—H111108.8
N1—C1—C6119.35 (12)C9—C10—C11110.19 (14)
C2—C1—C6121.20 (12)C9—C10—H101110.3
C1—C6—C5119.35 (13)C11—C10—H101110.4
C1—C6—H61120.6C9—C10—H102107.9
C5—C6—H61120.1C11—C10—H102109.6
N2—C8—C9110.88 (12)H101—C10—H102108.3
N2—C8—H81109.1
C12—N2—C8—C9−58.84 (17)C8—C9—C10—C11−54.06 (18)
C8—N2—C12—C1158.21 (16)C9—C10—C11—C1254.45 (18)
N2—C8—C9—C1056.24 (17)C10—C11—C12—N2−56.22 (17)
  4 in total

1.  Quantitative structure-activity analyses of nitrobenzene toxicity to Tetrahymena pyriformis.

Authors:  M T Cronin; B W Gregory; T W Schultz
Journal:  Chem Res Toxicol       Date:  1998-08       Impact factor: 3.739

2.  Structures of piperazine, piperidine and morpholine.

Authors:  Andrew Parkin; Iain D H Oswald; Simon Parsons
Journal:  Acta Crystallogr B       Date:  2004-03-18

3.  Involvement of apoptosis in the rat germ cell degeneration induced by nitrobenzene.

Authors:  K Shinoda; K Mitsumori; K Yasuhara; C Uneyama; H Onodera; K Takegawa; M Takahashi; T Umemura
Journal:  Arch Toxicol       Date:  1998-04       Impact factor: 5.153

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.