Literature DB >> 21578462

1-(3-Chloro-2-pyrid-yl)-3-methyl-1H-pyrazole-5-carboxylic acid.

Hua Cai1, Ying Guo, Jian-Gang Li, Yao Wu.   

Abstract

In the title mol-ecule, C(10)H(8)ClN(3)O(2), the dihedral angle between the pyridine and pyrazole rings is 64.01 (8)°. In the crystal structure, inter-molecular O-H⋯N hydrogen bonds link mol-ecules, forming extended chains along [001]. These chains are, in turn, linked by weak inter-molecular C-H⋯O inter-actions, forming a two-dimensional network perpendicular to the b axis.

Entities:  

Year:  2009        PMID: 21578462      PMCID: PMC2971182          DOI: 10.1107/S1600536809043906

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was prepared adventitiously as part of our research program related to metal-organic frameworks. See: Lehn (1995 ▶) for background information. For the topologies of metal-organic frameworks, see: Kitakawa et al. (2004 ▶); Rosi et al. (2005 ▶); Subramanian & Zaworotko (1994 ▶).

Experimental

Crystal data

C10H8ClN3O2 M = 237.64 Orthorhombic, a = 8.250 (6) Å b = 11.232 (8) Å c = 11.942 (8) Å V = 1106.6 (13) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 296 K 0.24 × 0.20 × 0.18 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.582, T max = 1.000 5084 measured reflections 1943 independent reflections 1754 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.075 S = 1.04 1943 reflections 147 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.13 e Å−3 Absolute structure: Flack (1983 ▶) 912 Friedel pairs Flack parameter: 0.03 (7) Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶), PLATON (Spek, 2009 ▶) and DIAMOND (Brandenburg & Berndt, 1999 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809043906/lh2933sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043906/lh2933Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8ClN3O2F(000) = 488
Mr = 237.64Dx = 1.426 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 2602 reflections
a = 8.250 (6) Åθ = 3.1–27.5°
b = 11.232 (8) ŵ = 0.33 mm1
c = 11.942 (8) ÅT = 296 K
V = 1106.6 (13) Å3Block, colourless
Z = 40.24 × 0.20 × 0.18 mm
Bruker SMART APEXII CCD diffractometer1943 independent reflections
Radiation source: fine-focus sealed tube1754 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→8
Tmin = 0.582, Tmax = 1.000k = −11→13
5084 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.075w = 1/[σ2(Fo2) + (0.0254P)2 + 0.1923P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
1943 reflectionsΔρmax = 0.14 e Å3
147 parametersΔρmin = −0.13 e Å3
1 restraintAbsolute structure: Flack (1983) 912 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.19679 (9)0.18938 (6)0.13597 (6)0.0748 (2)
O10.7978 (2)0.17726 (13)0.1372 (2)0.0622 (5)
O20.6983 (2)0.34151 (14)0.05851 (17)0.0664 (5)
H20.65040.29360.01860.100*
N10.9622 (2)0.18043 (16)0.42451 (15)0.0446 (5)
N20.9738 (2)0.33015 (15)0.29058 (16)0.0414 (4)
N31.0231 (2)0.42331 (17)0.35467 (17)0.0490 (5)
C11.1171 (3)0.1403 (2)0.26170 (19)0.0484 (6)
C21.1532 (3)0.0288 (2)0.3012 (2)0.0606 (7)
H2A1.2178−0.02240.25940.073*
C31.0928 (3)−0.0067 (2)0.4034 (3)0.0625 (7)
H31.1145−0.08230.43140.075*
C40.9994 (3)0.0727 (2)0.4629 (2)0.0544 (6)
H40.96070.05010.53290.065*
C51.0179 (2)0.21361 (19)0.32469 (18)0.0396 (5)
C60.9573 (3)0.5193 (2)0.3074 (2)0.0502 (6)
C70.8657 (3)0.4882 (2)0.2137 (2)0.0508 (6)
H70.80920.53950.16680.061*
C80.8758 (3)0.36675 (19)0.20469 (19)0.0421 (5)
C90.9834 (4)0.6389 (2)0.3575 (3)0.0786 (9)
H9A1.07550.63630.40660.118*
H9B0.88890.66170.39920.118*
H9C1.00260.69580.29910.118*
C100.7890 (3)0.28386 (18)0.1310 (2)0.0435 (5)
U11U22U33U12U13U23
Cl10.0825 (5)0.0840 (5)0.0578 (4)0.0041 (4)0.0284 (4)−0.0126 (4)
O10.0816 (12)0.0439 (10)0.0612 (10)−0.0104 (8)−0.0217 (10)0.0019 (10)
O20.0833 (13)0.0539 (10)0.0618 (12)−0.0028 (9)−0.0294 (11)0.0010 (9)
N10.0460 (11)0.0480 (11)0.0399 (11)−0.0015 (8)0.0012 (9)0.0004 (8)
N20.0477 (11)0.0391 (10)0.0376 (10)−0.0016 (8)0.0009 (9)−0.0041 (8)
N30.0497 (11)0.0477 (11)0.0496 (11)−0.0037 (9)−0.0004 (10)−0.0108 (9)
C10.0471 (13)0.0541 (14)0.0441 (13)0.0011 (11)0.0002 (10)−0.0101 (11)
C20.0564 (14)0.0555 (15)0.0701 (17)0.0155 (12)−0.0069 (14)−0.0158 (13)
C30.0659 (17)0.0482 (13)0.0734 (18)0.0074 (14)−0.0155 (15)0.0052 (13)
C40.0598 (15)0.0549 (16)0.0484 (13)−0.0030 (13)−0.0059 (11)0.0096 (11)
C50.0368 (11)0.0429 (12)0.0391 (12)−0.0007 (9)−0.0034 (9)−0.0053 (9)
C60.0511 (13)0.0416 (13)0.0578 (15)−0.0040 (11)0.0021 (12)−0.0096 (11)
C70.0562 (14)0.0425 (13)0.0539 (13)0.0012 (11)−0.0029 (12)0.0017 (11)
C80.0451 (12)0.0438 (13)0.0373 (11)−0.0019 (10)0.0012 (9)−0.0007 (10)
C90.088 (2)0.0546 (16)0.093 (2)0.0004 (16)−0.0138 (19)−0.0207 (16)
C100.0493 (12)0.0425 (12)0.0386 (11)−0.0034 (10)0.0030 (11)0.0035 (12)
Cl1—C11.729 (3)C2—H2A0.9300
O1—C101.202 (2)C3—C41.376 (4)
O2—C101.314 (3)C3—H30.9300
O2—H20.8200C4—H40.9300
N1—C41.330 (3)C6—C71.394 (4)
N1—C51.331 (3)C6—C91.486 (4)
N2—N31.359 (2)C7—C81.371 (3)
N2—C81.369 (3)C7—H70.9300
N2—C51.418 (3)C8—C101.468 (3)
N3—C61.333 (3)C9—H9A0.9600
C1—C21.371 (4)C9—H9B0.9600
C1—C51.383 (3)C9—H9C0.9600
C2—C31.377 (4)
C10—O2—H2109.5C1—C5—N2123.0 (2)
C4—N1—C5118.9 (2)N3—C6—C7111.0 (2)
N3—N2—C8111.56 (16)N3—C6—C9120.1 (2)
N3—N2—C5118.17 (18)C7—C6—C9128.9 (2)
C8—N2—C5130.08 (18)C8—C7—C6106.2 (2)
C6—N3—N2105.21 (18)C8—C7—H7126.9
C2—C1—C5119.0 (2)C6—C7—H7126.9
C2—C1—Cl1120.47 (19)N2—C8—C7106.01 (19)
C5—C1—Cl1120.49 (18)N2—C8—C10123.1 (2)
C1—C2—C3119.4 (2)C7—C8—C10130.4 (2)
C1—C2—H2A120.3C6—C9—H9A109.5
C3—C2—H2A120.3C6—C9—H9B109.5
C4—C3—C2118.2 (2)H9A—C9—H9B109.5
C4—C3—H3120.9C6—C9—H9C109.5
C2—C3—H3120.9H9A—C9—H9C109.5
N1—C4—C3122.7 (3)H9B—C9—H9C109.5
N1—C4—H4118.6O1—C10—O2124.5 (2)
C3—C4—H4118.6O1—C10—C8124.4 (3)
N1—C5—C1121.6 (2)O2—C10—C8111.10 (19)
N1—C5—N2115.29 (19)
C8—N2—N3—C6−0.9 (2)C8—N2—C5—C169.0 (3)
C5—N2—N3—C6−176.4 (2)N2—N3—C6—C70.2 (3)
C5—C1—C2—C3−1.3 (3)N2—N3—C6—C9178.8 (2)
Cl1—C1—C2—C3177.8 (2)N3—C6—C7—C80.6 (3)
C1—C2—C3—C4−0.8 (4)C9—C6—C7—C8−177.9 (3)
C5—N1—C4—C3−0.4 (4)N3—N2—C8—C71.3 (2)
C2—C3—C4—N11.7 (4)C5—N2—C8—C7176.0 (2)
C4—N1—C5—C1−1.9 (3)N3—N2—C8—C10−172.2 (2)
C4—N1—C5—N2−179.44 (19)C5—N2—C8—C102.6 (4)
C2—C1—C5—N12.8 (3)C6—C7—C8—N2−1.1 (2)
Cl1—C1—C5—N1−176.29 (17)C6—C7—C8—C10171.7 (2)
C2—C1—C5—N2−179.9 (2)N2—C8—C10—O1−1.5 (4)
Cl1—C1—C5—N21.0 (3)C7—C8—C10—O1−173.2 (3)
N3—N2—C5—N160.9 (3)N2—C8—C10—O2177.4 (2)
C8—N2—C5—N1−113.5 (3)C7—C8—C10—O25.7 (4)
N3—N2—C5—C1−116.5 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2···N1i0.821.932.755 (3)180
C2—H2A···O1ii0.932.363.258 (4)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N1i0.821.932.755 (3)180
C2—H2A⋯O1ii0.932.363.258 (4)161

Symmetry codes: (i) ; (ii) .

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1.  Functional porous coordination polymers.

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