Literature DB >> 21578424

Pyridinium-2-carboxyl-ate-benzene-1,2-diol (1/1).

Cuong Quoc Ton, Michael Bolte.   

Abstract

The title compound, C(6)H(5)NO(2)·C(6)H(6)O(2), crystallizes with one pyridinium-2-carboxyl-ate zwitterion and one mol-ecule of benzene-1,2-diol in the asymmetric unit. The crystal structure is characterized by alternating mol-ecules forming zigzag chains running along the a axis: the mol-ecules are connected by O-H⋯O and N-H⋯(O,O) hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578424      PMCID: PMC2971006          DOI: 10.1107/S1600536809043207

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For co-crystallization experiments, see: Ton & Bolte (2005 ▶); Tutughamiarso et al. (2009 ▶).

Experimental

Crystal data

C6H5NO2·C6H6O2 M = 233.22 Orthorhombic, a = 6.9710 (14) Å b = 6.9855 (14) Å c = 21.806 (4) Å V = 1061.9 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 173 K 0.21 × 0.18 × 0.16 mm

Data collection

Stoe IPDSII two-circle diffractometer Absorption correction: none 11928 measured reflections 1196 independent reflections 1105 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.096 wR(F 2) = 0.197 S = 1.23 1196 reflections 155 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.34 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809043207/ng2670sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043207/ng2670Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H5NO2·C6H6O2F(000) = 488
Mr = 233.22Dx = 1.459 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 6345 reflections
a = 6.9710 (14) Åθ = 3.5–24.3°
b = 6.9855 (14) ŵ = 0.11 mm1
c = 21.806 (4) ÅT = 173 K
V = 1061.9 (4) Å3Block, colourless
Z = 40.21 × 0.18 × 0.16 mm
Stoe IPDSII two-circle diffractometer1105 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.081
graphiteθmax = 25.8°, θmin = 3.1°
ω scansh = −8→8
11928 measured reflectionsk = −8→8
1196 independent reflectionsl = −26→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.096H-atom parameters constrained
wR(F2) = 0.197w = 1/[σ2(Fo2) + (0.0513P)2 + 3.5668P] where P = (Fo2 + 2Fc2)/3
S = 1.23(Δ/σ)max = 0.001
1196 reflectionsΔρmax = 0.44 e Å3
155 parametersΔρmin = −0.34 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.036 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.1064 (7)0.3802 (7)0.0845 (2)0.0257 (11)
H11.20930.41530.06790.039*
O20.8174 (6)0.1866 (8)0.1466 (2)0.0295 (12)
H20.79940.27560.12140.044*
C11.1455 (9)0.3029 (9)0.1410 (3)0.0200 (13)
C20.9985 (9)0.2048 (10)0.1716 (3)0.0220 (13)
C31.0330 (10)0.1145 (11)0.2274 (3)0.0259 (14)
H30.93320.04600.24730.031*
C41.2160 (10)0.1249 (11)0.2542 (3)0.0303 (16)
H41.23990.06490.29250.036*
C51.3612 (9)0.2231 (10)0.2244 (3)0.0280 (15)
H51.48500.23020.24240.034*
C61.3273 (9)0.3110 (10)0.1686 (3)0.0254 (14)
H61.42840.37770.14870.031*
O110.3875 (7)0.5038 (7)0.0125 (2)0.0307 (12)
O120.6497 (8)0.4131 (10)0.0643 (3)0.0516 (18)
N10.8827 (8)0.5092 (8)−0.0246 (2)0.0222 (12)
H310.90860.49120.01600.027*
C111.0169 (10)0.5516 (10)−0.0666 (3)0.0260 (15)
H111.14790.5226−0.05910.031*
C130.6922 (9)0.5494 (9)−0.0326 (3)0.0208 (13)
C140.6360 (10)0.6404 (9)−0.0853 (3)0.0237 (14)
H140.50490.6725−0.09140.028*
C150.7722 (10)0.6856 (10)−0.1299 (3)0.0275 (15)
H150.73470.7491−0.16650.033*
C160.9629 (10)0.6368 (11)−0.1202 (3)0.0301 (17)
H161.05590.6628−0.15100.036*
C1310.5649 (10)0.4815 (11)0.0200 (3)0.0283 (15)
U11U22U33U12U13U23
O10.015 (2)0.032 (2)0.030 (2)−0.002 (2)0.0002 (18)0.006 (2)
O20.015 (2)0.033 (3)0.041 (3)−0.005 (2)−0.003 (2)0.007 (2)
C10.017 (3)0.015 (3)0.028 (3)−0.007 (3)0.002 (3)−0.001 (3)
C20.017 (3)0.020 (3)0.029 (3)−0.004 (3)0.000 (3)−0.003 (3)
C30.025 (3)0.026 (3)0.027 (3)−0.002 (3)0.006 (3)−0.002 (3)
C40.032 (4)0.034 (4)0.026 (3)0.001 (3)−0.004 (3)0.006 (3)
C50.019 (3)0.035 (4)0.030 (3)0.000 (3)−0.004 (3)−0.003 (3)
C60.019 (3)0.029 (3)0.028 (3)−0.005 (3)0.003 (3)−0.003 (3)
O110.016 (2)0.043 (3)0.033 (2)−0.002 (2)0.002 (2)0.002 (3)
O120.024 (3)0.086 (5)0.044 (3)0.015 (3)0.007 (2)0.033 (3)
N10.019 (3)0.025 (3)0.023 (2)0.004 (3)0.001 (2)0.000 (2)
C110.022 (3)0.022 (3)0.034 (3)0.000 (3)0.005 (3)−0.002 (3)
C130.015 (3)0.015 (3)0.033 (3)−0.001 (2)0.002 (3)0.000 (3)
C140.019 (3)0.025 (3)0.027 (3)0.000 (3)−0.002 (3)0.002 (3)
C150.038 (4)0.021 (3)0.024 (3)−0.001 (3)−0.002 (3)−0.002 (3)
C160.028 (4)0.034 (4)0.028 (3)−0.001 (3)0.004 (3)0.002 (3)
C1310.028 (4)0.028 (3)0.029 (3)0.004 (3)0.003 (3)0.005 (3)
O1—C11.374 (8)O11—C1311.257 (8)
O1—H10.8397O12—C1311.229 (9)
O2—C21.381 (7)N1—C111.342 (9)
O2—H20.8392N1—C131.368 (8)
C1—C21.401 (9)N1—H310.9123
C1—C61.404 (9)C11—C161.365 (10)
C2—C31.391 (9)C11—H110.9500
C3—C41.405 (9)C13—C141.370 (9)
C3—H30.9500C13—C1311.526 (9)
C4—C51.384 (10)C14—C151.396 (10)
C4—H40.9500C14—H140.9500
C5—C61.383 (9)C15—C161.389 (10)
C5—H50.9500C15—H150.9500
C6—H60.9500C16—H160.9500
C1—O1—H1109.4C11—N1—H31123.7
C2—O2—H2109.1C13—N1—H31110.1
O1—C1—C2118.3 (5)N1—C11—C16119.3 (7)
O1—C1—C6123.2 (5)N1—C11—H11120.4
C2—C1—C6118.5 (6)C16—C11—H11120.4
O2—C2—C3117.5 (6)N1—C13—C14118.6 (6)
O2—C2—C1121.7 (6)N1—C13—C131113.9 (6)
C3—C2—C1120.7 (6)C14—C13—C131127.4 (6)
C2—C3—C4119.8 (6)C13—C14—C15119.7 (6)
C2—C3—H3120.1C13—C14—H14120.2
C4—C3—H3120.1C15—C14—H14120.2
C5—C4—C3119.6 (6)C16—C15—C14119.4 (6)
C5—C4—H4120.2C16—C15—H15120.3
C3—C4—H4120.2C14—C15—H15120.3
C6—C5—C4120.5 (6)C11—C16—C15120.0 (7)
C6—C5—H5119.8C11—C16—H16120.0
C4—C5—H5119.8C15—C16—H16120.0
C5—C6—C1120.9 (6)O12—C131—O11128.6 (7)
C5—C6—H6119.6O12—C131—C13115.6 (6)
C1—C6—H6119.6O11—C131—C13115.8 (6)
C11—N1—C13123.0 (6)
O1—C1—C2—O2−0.7 (10)C11—N1—C13—C14−1.3 (10)
C6—C1—C2—O2−178.3 (6)C11—N1—C13—C131177.8 (6)
O1—C1—C2—C3176.4 (6)N1—C13—C14—C151.5 (9)
C6—C1—C2—C3−1.2 (10)C131—C13—C14—C15−177.4 (6)
O2—C2—C3—C4178.6 (6)C13—C14—C15—C160.2 (10)
C1—C2—C3—C41.4 (10)N1—C11—C16—C152.5 (11)
C2—C3—C4—C5−0.8 (11)C14—C15—C16—C11−2.3 (11)
C3—C4—C5—C60.1 (11)N1—C13—C131—O125.1 (9)
C4—C5—C6—C10.1 (11)C14—C13—C131—O12−176.0 (7)
O1—C1—C6—C5−177.0 (6)N1—C13—C131—O11−175.2 (6)
C2—C1—C6—C50.5 (10)C14—C13—C131—O113.7 (10)
C13—N1—C11—C16−0.8 (10)
D—H···AD—HH···AD···AD—H···A
O1—H1···O11i0.841.842.655 (6)163
O2—H2···O120.841.892.662 (7)153
N1—H31···O120.912.162.617 (7)110
N1—H31···O10.912.182.984 (7)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O11i0.841.842.655 (6)163
O2—H2⋯O120.841.892.662 (7)153
N1—H31⋯O120.912.162.617 (7)110
N1—H31⋯O10.912.182.984 (7)147

Symmetry code: (i) .

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