Literature DB >> 21578423

N'-(3-Phenyl-allyl-idene)nicotinohydrazide monohydrate.

R Archana, N Saradhadevi, A Manimekalai, A Thiruvalluvar, R J Butcher.   

Abstract

In the title compound, C(15)H(13)N(3)O·H(2)O, the dihedral angle between the pyridine and phenyl rings is 35.45 (7)°. Inter-molecular O-H⋯O, O-H⋯N, N-H⋯O and C-H⋯O hydrogen bonds are found in the crystal structure. In addition, C-H⋯π inter-actions involving the pyridine and phenyl rings are also found.

Entities:  

Year:  2009        PMID: 21578423      PMCID: PMC2970972          DOI: 10.1107/S1600536809043001

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related crystal structure and its chemical and biological applications, see: Archana et al. (2009 ▶).

Experimental

Crystal data

C15H13N3O·H2O M = 269.30 Monoclinic, a = 9.8456 (3) Å b = 9.1288 (3) Å c = 15.5389 (5) Å β = 95.938 (3)° V = 1389.12 (8) Å3 Z = 4 Cu Kα radiation μ = 0.72 mm−1 T = 110 K 0.48 × 0.45 × 0.24 mm

Data collection

Oxford Diffraction Xcalibur, Ruby, Gemini diffractometer Absorption correction: multi-scan (CrysAlisPro; Oxford Diffraction, 2009 ▶) T min = 0.704, T max = 1.000 6007 measured reflections 2742 independent reflections 2346 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.125 S = 1.05 2742 reflections 193 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlisPro (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlisPro; data reduction: CrysAlisPro; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809043001/wn2355sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043001/wn2355Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3O·H2OF(000) = 568
Mr = 269.30Dx = 1.288 Mg m3
Monoclinic, P21/cMelting point: 463 K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54184 Å
a = 9.8456 (3) ÅCell parameters from 3706 reflections
b = 9.1288 (3) Åθ = 4.5–74.0°
c = 15.5389 (5) ŵ = 0.72 mm1
β = 95.938 (3)°T = 110 K
V = 1389.12 (8) Å3Plate, colourless
Z = 40.48 × 0.45 × 0.24 mm
Oxford Diffraction Xcalibur, Ruby, Gemini diffractometer2742 independent reflections
Radiation source: Enhance (Cu) X-ray Source2346 reflections with I > 2σ(I)
graphiteRint = 0.022
Detector resolution: 10.5081 pixels mm-1θmax = 74.6°, θmin = 4.5°
ω scansh = −12→12
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −10→9
Tmin = 0.704, Tmax = 1.000l = −13→18
6007 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.125H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0821P)2 + 0.2609P] where P = (Fo2 + 2Fc2)/3
2742 reflections(Δ/σ)max = 0.001
193 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O70.47479 (10)0.51591 (11)0.11459 (6)0.0278 (3)
N10.16249 (12)0.38852 (13)−0.06770 (7)0.0251 (3)
N80.40129 (11)0.37087 (13)0.21906 (7)0.0229 (3)
N90.50761 (11)0.41751 (13)0.27801 (7)0.0239 (3)
C20.26809 (14)0.41542 (15)−0.00816 (8)0.0234 (4)
C30.26600 (13)0.38761 (14)0.08017 (8)0.0213 (3)
C40.14754 (14)0.32800 (15)0.10770 (8)0.0245 (4)
C50.03714 (14)0.30162 (16)0.04673 (9)0.0266 (4)
C60.04847 (14)0.33422 (15)−0.03908 (9)0.0249 (4)
C70.39013 (13)0.43067 (15)0.13894 (8)0.0214 (3)
C100.51203 (13)0.35650 (15)0.35280 (9)0.0244 (4)
C110.61459 (14)0.39886 (15)0.42168 (9)0.0253 (4)
C120.61879 (13)0.33520 (16)0.49986 (8)0.0252 (4)
C210.71252 (14)0.36867 (15)0.57704 (8)0.0241 (4)
C220.79857 (16)0.49073 (16)0.58318 (9)0.0308 (4)
C230.89016 (17)0.51244 (18)0.65604 (10)0.0366 (5)
C240.89795 (15)0.41399 (17)0.72450 (9)0.0319 (4)
C250.80997 (15)0.29477 (17)0.72029 (9)0.0306 (4)
C260.71789 (14)0.27272 (17)0.64743 (9)0.0273 (4)
O1W0.26480 (10)0.11005 (11)0.26235 (6)0.0266 (3)
H20.348890.45566−0.027070.0281*
H40.142520.305880.167020.0294*
H5−0.045110.261710.063730.0320*
H6−0.028440.31734−0.080040.0299*
H80.3493 (18)0.294 (2)0.2342 (11)0.035 (5)*
H100.447330.282920.362910.0293*
H110.679480.472250.411570.0304*
H120.553720.260020.505880.0302*
H220.794300.559430.537060.0369*
H230.948330.595720.659150.0440*
H240.962600.428040.773570.0383*
H250.812720.228040.767350.0366*
H260.657680.191190.645430.0328*
H1W0.335 (3)0.054 (3)0.2663 (14)0.057 (6)*
H2W0.232 (3)0.106 (3)0.3128 (16)0.070 (7)*
U11U22U33U12U13U23
O70.0289 (5)0.0327 (5)0.0219 (5)−0.0068 (4)0.0028 (4)0.0027 (4)
N10.0305 (6)0.0268 (6)0.0179 (5)0.0013 (5)0.0022 (4)−0.0001 (4)
N80.0222 (5)0.0268 (6)0.0192 (6)−0.0023 (4)−0.0006 (4)0.0013 (4)
N90.0247 (5)0.0273 (6)0.0191 (5)−0.0010 (4)−0.0004 (4)−0.0012 (4)
C20.0267 (6)0.0245 (7)0.0194 (6)0.0002 (5)0.0046 (5)0.0002 (5)
C30.0246 (6)0.0204 (6)0.0189 (6)0.0021 (5)0.0023 (5)0.0008 (5)
C40.0263 (7)0.0281 (7)0.0194 (6)0.0018 (5)0.0032 (5)0.0042 (5)
C50.0245 (6)0.0295 (7)0.0259 (7)−0.0008 (5)0.0029 (5)0.0033 (5)
C60.0263 (6)0.0242 (7)0.0235 (7)0.0020 (5)−0.0007 (5)−0.0009 (5)
C70.0231 (6)0.0233 (6)0.0182 (6)0.0019 (5)0.0036 (5)−0.0004 (5)
C100.0249 (6)0.0262 (7)0.0219 (7)0.0004 (5)0.0014 (5)0.0000 (5)
C110.0267 (7)0.0260 (7)0.0230 (7)−0.0003 (5)0.0013 (5)−0.0019 (5)
C120.0241 (6)0.0274 (7)0.0236 (7)−0.0002 (5)0.0008 (5)−0.0009 (5)
C210.0251 (6)0.0268 (7)0.0203 (6)0.0040 (5)0.0023 (5)−0.0016 (5)
C220.0424 (8)0.0250 (7)0.0233 (7)−0.0025 (6)−0.0042 (6)0.0028 (5)
C230.0461 (9)0.0304 (8)0.0310 (8)−0.0089 (7)−0.0074 (7)−0.0004 (6)
C240.0352 (8)0.0385 (8)0.0202 (7)0.0001 (6)−0.0053 (6)−0.0034 (6)
C250.0338 (7)0.0383 (8)0.0194 (6)0.0016 (6)0.0021 (5)0.0044 (5)
C260.0263 (6)0.0332 (7)0.0229 (7)−0.0011 (5)0.0044 (5)0.0011 (5)
O1W0.0283 (5)0.0294 (5)0.0220 (5)0.0024 (4)0.0023 (4)0.0048 (4)
O7—C71.2283 (16)C21—C261.3980 (19)
O1W—H1W0.86 (3)C22—C231.387 (2)
O1W—H2W0.88 (3)C23—C241.389 (2)
N1—C21.3410 (17)C24—C251.388 (2)
N1—C61.3443 (18)C25—C261.390 (2)
N8—N91.3848 (15)C2—H20.9500
N8—C71.3534 (17)C4—H40.9500
N9—C101.2854 (18)C5—H50.9500
N8—H80.914 (18)C6—H60.9500
C2—C31.3981 (18)C10—H100.9500
C3—C41.3938 (19)C11—H110.9500
C3—C71.5004 (18)C12—H120.9500
C4—C51.3871 (19)C22—H220.9500
C5—C61.382 (2)C23—H230.9500
C10—C111.4461 (19)C24—H240.9500
C11—C121.3435 (19)C25—H250.9500
C12—C211.4678 (18)C26—H260.9500
C21—C221.397 (2)
O1W···N1i2.9222 (15)C22···H112.8000
O1W···O7ii3.1550 (14)C23···H5ix2.9900
O1W···N9ii2.9655 (15)C24···H5ix3.0700
O1W···C43.2392 (16)C25···H5ix2.9900
O1W···N82.8486 (15)C26···H5ix2.8000
O7···C10iii3.1507 (17)H1W···N9ii2.16 (3)
O7···N92.6814 (14)H1W···H82.26 (3)
O7···C2iv3.2253 (17)H1W···O7ii2.52 (3)
O7···O1Wiii3.1550 (14)H1W···C10ii3.09 (3)
O1W···H102.7500H2···O72.4700
O1W···H81.944 (18)H2···O7iv2.3300
O1W···H42.5400H2W···N1i2.05 (3)
O7···H22.4700H2W···C2i2.78 (2)
O7···H10iii2.5700H2W···H82.46 (3)
O7···H12iii2.9100H4···O1W2.5400
O7···H2iv2.3300H4···N82.6600
O7···H26v2.6200H4···H82.1900
O7···H1Wiii2.52 (3)H5···C21x2.6900
N1···O1Wv2.9222 (15)H5···C22x2.8000
N8···O1W2.8486 (15)H5···C23x2.9900
N9···O1Wiii2.9655 (15)H5···C24x3.0700
N9···O72.6814 (14)H5···C25x2.9900
N1···H2Wv2.05 (3)H5···C26x2.8000
N8···H26v2.9300H6···H24viii2.4800
N8···H42.6600H6···H23ii2.5400
N9···H1Wiii2.16 (3)H8···H1W2.26 (3)
N9···H26v2.8400H8···O1W1.944 (18)
C2···O7iv3.2253 (17)H8···C42.664 (17)
C4···O1W3.2392 (16)H8···H102.1300
C4···C24vi3.576 (2)H8···H2W2.46 (3)
C5···C6vii3.429 (2)H8···H42.1900
C6···C22ii3.575 (2)H10···O7ii2.5700
C6···C6vii3.4332 (19)H10···O1W2.7500
C6···C23ii3.539 (2)H10···H82.1300
C6···C5vii3.429 (2)H10···H122.3700
C10···C22vi3.594 (2)H11···H222.2900
C10···O7ii3.1507 (17)H11···C222.8000
C10···C21vi3.5874 (19)H12···H102.3700
C21···C10vi3.5874 (19)H12···H262.3800
C22···C10vi3.594 (2)H12···O7ii2.9100
C22···C6iii3.575 (2)H22···C112.8000
C23···C6iii3.539 (2)H22···H112.2900
C24···C4vi3.576 (2)H22···C6iii2.9500
C2···H2Wv2.78 (2)H23···C6iii2.8700
C4···H82.664 (17)H23···H6iii2.5400
C6···H23ii2.8700H24···C6xi3.0700
C6···H22ii2.9500H24···H6xi2.4800
C6···H24viii3.0700H26···H122.3800
C7···H26v2.8500H26···O7i2.6200
C10···H1Wiii3.09 (3)H26···N8i2.9300
C11···H222.8000H26···N9i2.8400
C21···H5ix2.6900H26···C7i2.8500
C22···H5ix2.8000
H1W—O1W—H2W106 (2)C21—C26—C25121.01 (14)
C2—N1—C6116.98 (11)N1—C2—H2118.00
N9—N8—C7117.93 (11)C3—C2—H2118.00
N8—N9—C10114.67 (11)C5—C4—H4121.00
C7—N8—H8123.5 (11)C3—C4—H4121.00
N9—N8—H8118.1 (11)C4—C5—H5120.00
N1—C2—C3123.71 (12)C6—C5—H5120.00
C2—C3—C7117.14 (11)C5—C6—H6118.00
C4—C3—C7124.77 (11)N1—C6—H6118.00
C2—C3—C4118.03 (12)N9—C10—H10120.00
C3—C4—C5118.66 (12)C11—C10—H10120.00
C4—C5—C6119.07 (13)C12—C11—H11120.00
N1—C6—C5123.52 (13)C10—C11—H11120.00
N8—C7—C3115.96 (11)C11—C12—H12116.00
O7—C7—C3120.96 (11)C21—C12—H12116.00
O7—C7—N8123.08 (12)C23—C22—H22120.00
N9—C10—C11120.60 (12)C21—C22—H22120.00
C10—C11—C12120.49 (13)C22—C23—H23120.00
C11—C12—C21127.36 (13)C24—C23—H23120.00
C12—C21—C22123.19 (12)C25—C24—H24120.00
C12—C21—C26118.59 (12)C23—C24—H24120.00
C22—C21—C26118.21 (12)C24—C25—H25120.00
C21—C22—C23120.55 (13)C26—C25—H25120.00
C22—C23—C24120.84 (15)C21—C26—H26119.00
C23—C24—C25119.11 (14)C25—C26—H26119.00
C24—C25—C26120.21 (13)
C6—N1—C2—C31.2 (2)C3—C4—C5—C60.4 (2)
C2—N1—C6—C5−2.0 (2)C4—C5—C6—N11.2 (2)
C7—N8—N9—C10179.89 (12)N9—C10—C11—C12179.83 (13)
N9—N8—C7—O75.25 (19)C10—C11—C12—C21−177.76 (13)
N9—N8—C7—C3−174.34 (11)C11—C12—C21—C2210.7 (2)
N8—N9—C10—C11−177.62 (12)C11—C12—C21—C26−168.23 (14)
N1—C2—C3—C40.3 (2)C12—C21—C22—C23−176.56 (14)
N1—C2—C3—C7−177.10 (12)C26—C21—C22—C232.4 (2)
C2—C3—C4—C5−1.10 (19)C12—C21—C26—C25176.51 (13)
C7—C3—C4—C5176.05 (13)C22—C21—C26—C25−2.5 (2)
C2—C3—C7—O716.54 (19)C21—C22—C23—C24−0.3 (2)
C2—C3—C7—N8−163.87 (12)C22—C23—C24—C25−1.7 (2)
C4—C3—C7—O7−160.64 (13)C23—C24—C25—C261.6 (2)
C4—C3—C7—N818.96 (19)C24—C25—C26—C210.5 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1W···O7ii0.86 (3)2.52 (3)3.1550 (14)131.9 (19)
O1W—H1W···N9ii0.86 (3)2.16 (3)2.9655 (15)157 (2)
O1W—H2W···N1i0.88 (3)2.05 (3)2.9222 (15)176 (2)
N8—H8···O1W0.914 (18)1.944 (18)2.8486 (15)170.3 (17)
C2—H2···O7iv0.952.333.2253 (17)157
C4—H4···O1W0.952.543.2392 (16)130
C10—H10···O7ii0.952.573.1507 (17)120
C22—H22···Cg1iii0.952.943.7742 (16)148
C5—H5···Cg2x0.952.543.4342 (15)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W⋯O7i0.86 (3)2.52 (3)3.1550 (14)131.9 (19)
O1W—H1W⋯N9i0.86 (3)2.16 (3)2.9655 (15)157 (2)
O1W—H2W⋯N1ii0.88 (3)2.05 (3)2.9222 (15)176 (2)
N8—H8⋯O1W0.914 (18)1.944 (18)2.8486 (15)170.3 (17)
C2—H2⋯O7iii0.952.333.2253 (17)157
C4—H4⋯O1W0.952.543.2392 (16)130
C10—H10⋯O7i0.952.573.1507 (17)120
C22—H22⋯Cg1iv0.952.943.7742 (16)148
C5—H5⋯Cg2v0.952.543.4342 (15)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg1 and Cg2 are the centroids of the N1–C6 and C21–C26 rings, respectively.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-(2-Methyl-3-phenyl-allyl-idene)nicotinohydrazide monohydrate.

Authors:  R Archana; A Manimekalai; N Saradhadevi; A Thiruvalluvar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.