Literature DB >> 21578419

Dimethyl 2,2'-[butane-1,4-diylbis(sul-fanediyl)]dibenzoate.

Iván Brito, Alejandro Cárdenas, Joselyn Albanez, Michael Bolte, Matías López-Rodríguez.   

Abstract

The title compound, C(20)H(22)O(4)S(2), was synthesized by the reaction of 1,4-dibromo-butene with methyl thio-salicylate. The aliphatic segment of this ligand is in an all-trans conformation. The bridging chain, -S-(CH(2))(4)-S-, is almost planar (r.m.s. deviation for all non-H atoms: 0.056 Å) and its mean plane forms dihedral angles of 16.60 (7) and 5.80 (2)° with the aromatic rings. In the crystal, the mol-ecules are linked by weak C-H⋯O inter-actions into chains with graph-set notation C(14) along [0 0 1]. The crystal studied was a racemic twin, the ratio of the twin components being 0.27 (9):0.73 (9).

Entities:  

Year:  2009        PMID: 21578419      PMCID: PMC2971371          DOI: 10.1107/S1600536809042846

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potential of coordination polymers based on multi­topic bridging ligands and metal centers as functional mat­erials, see: Guo et al. (2002 ▶); Melcer et al. (2001 ▶). For the use of flexible ligands in such structures, see: Bu et al. (2001 ▶); Withersby et al. (1997 ▶). For our studies on the synthesis and structural characterization of divalent sulfur compounds, see: Brito et al. (2004 ▶, 2005 ▶, 2006 ▶). For a related compound, see: Awaleh et al. (2005 ▶). For graph-set notation of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H22O4S2 M = 390.5 Orthorhombic, a = 7.4027 (7) Å b = 14.2976 (11) Å c = 17.7396 (13) Å V = 1877.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.31 mm−1 T = 173 K 0.28 × 0.25 × 0.23 mm

Data collection

STOE IPDS II two-circle-diffractometer Absorption correction: multi-scan (MULABS; Spek, 2003 ▶; Blessing, 1995 ▶) T min = 0.919, T max = 0.933 8050 measured reflections 3437 independent reflections 2244 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.065 S = 0.73 3437 reflections 239 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: Flack (1983 ▶), 1430 Friedel pairs Flack parameter: 0.27 (9) Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶) and PLATON (Spek, 2003 ▶; software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809042846/om2290sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809042846/om2290Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22O4S2F(000) = 824
Mr = 390.5Dx = 1.381 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 4482 reflections
a = 7.4027 (7) Åθ = 3.4–25.9°
b = 14.2976 (11) ŵ = 0.31 mm1
c = 17.7396 (13) ÅT = 173 K
V = 1877.6 (3) Å3Block, colourless
Z = 40.28 × 0.25 × 0.23 mm
STOE IPDS II two-circle-diffractometer2244 reflections with I > 2σ(I)
graphiteRint = 0.069
ω scansθmax = 25.6°, θmin = 3.3°
Absorption correction: multi-scan (MULABS; Spek, 2003; Blessing, 1995)h = −8→7
Tmin = 0.919, Tmax = 0.933k = −17→13
8050 measured reflectionsl = −21→20
3437 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.039w = 1/[σ2(Fo2) + (0.0001P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.065(Δ/σ)max < 0.001
S = 0.73Δρmax = 0.16 e Å3
3437 reflectionsΔρmin = −0.27 e Å3
239 parametersExtinction correction: SHELXL
0 restraintsExtinction coefficient: 0.0030 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1430 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.27 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.26565 (13)0.29690 (6)0.42902 (3)0.0257 (2)
S20.30831 (13)0.20540 (6)0.80343 (4)0.0292 (2)
O10.2673 (5)0.41362 (15)0.30785 (10)0.0449 (8)
O20.2727 (4)0.37231 (15)0.18638 (9)0.0340 (6)
O30.3720 (4)0.08601 (17)0.91935 (11)0.0359 (7)
O40.4816 (4)0.12269 (18)1.03289 (10)0.0369 (7)
C10.2650 (6)0.2191 (2)0.51027 (13)0.0249 (8)
H1A0.15540.17940.50990.03*
H1B0.37250.17790.50920.03*
C20.2678 (6)0.2809 (2)0.58124 (13)0.0264 (8)
H2A0.37540.3220.57990.032*
H2B0.15910.32110.58190.032*
C30.2725 (6)0.2212 (2)0.65279 (13)0.0261 (9)
H3A0.16070.18340.65610.031*
H3B0.37660.17790.65060.031*
C40.2885 (6)0.2832 (2)0.72250 (13)0.0280 (9)
H4A0.18030.32340.72760.034*
H4B0.39640.32380.71870.034*
C110.2723 (5)0.2174 (2)0.35190 (13)0.0232 (9)
C120.2798 (6)0.2517 (2)0.27679 (15)0.0244 (9)
C130.2887 (5)0.1872 (2)0.21715 (14)0.0288 (9)
H130.29570.20980.16690.035*
C140.2875 (6)0.0934 (2)0.22956 (15)0.0350 (10)
H140.29540.05110.18830.042*
C150.2747 (6)0.0593 (2)0.30303 (15)0.0339 (9)
H150.2696−0.00610.31210.041*
C160.2695 (6)0.1219 (2)0.36288 (14)0.0282 (9)
H160.26380.09830.41290.034*
C170.2741 (6)0.3527 (2)0.26050 (14)0.0276 (9)
C180.2495 (7)0.4698 (2)0.16715 (15)0.0389 (10)
H18A0.34720.50660.18970.058*
H18B0.13310.49190.18640.058*
H18C0.25250.4770.11220.058*
C210.3729 (5)0.2822 (3)0.87713 (15)0.0249 (9)
C220.4253 (6)0.2465 (3)0.94829 (16)0.0266 (9)
C230.4802 (5)0.3083 (3)1.00471 (16)0.0308 (9)
H230.51580.28411.05230.037*
C240.4840 (6)0.4036 (3)0.99282 (17)0.0349 (10)
H240.52170.44461.03190.042*
C250.4321 (5)0.4390 (2)0.92306 (17)0.0319 (9)
H250.4350.50450.9140.038*
C260.3758 (6)0.3778 (3)0.86655 (16)0.0294 (10)
H260.33850.40270.81940.035*
C270.4227 (5)0.1458 (3)0.96319 (16)0.0287 (9)
C280.4834 (6)0.0230 (3)1.04913 (17)0.0392 (11)
H28A0.5551−0.00951.01080.059*
H28B0.3594−0.0011.04850.059*
H28C0.53680.01251.0990.059*
U11U22U33U12U13U23
S10.0329 (6)0.0275 (4)0.0166 (3)−0.0011 (5)−0.0012 (4)−0.0023 (3)
S20.0443 (6)0.0259 (5)0.0175 (3)−0.0023 (5)−0.0008 (3)0.0001 (4)
O10.084 (3)0.0299 (14)0.0212 (9)−0.0002 (16)−0.0042 (15)−0.0037 (9)
O20.0500 (19)0.0330 (13)0.0189 (9)0.0006 (14)0.0028 (12)0.0030 (9)
O30.053 (2)0.0289 (15)0.0253 (11)−0.0018 (13)−0.0031 (12)−0.0013 (10)
O40.047 (2)0.0387 (16)0.0253 (10)0.0049 (14)−0.0123 (11)0.0070 (11)
C10.028 (2)0.0275 (19)0.0195 (12)−0.0018 (19)0.0011 (14)0.0010 (12)
C20.033 (2)0.027 (2)0.0193 (12)0.0011 (19)−0.0009 (16)−0.0032 (12)
C30.029 (3)0.027 (2)0.0224 (14)−0.002 (2)−0.0004 (14)0.0007 (11)
C40.035 (2)0.031 (2)0.0182 (12)0.005 (2)−0.0012 (14)0.0028 (13)
C110.019 (2)0.032 (2)0.0186 (13)0.001 (2)−0.0006 (14)−0.0067 (12)
C120.026 (2)0.0257 (18)0.0211 (13)0.0007 (18)0.0009 (15)−0.0021 (12)
C130.033 (3)0.034 (2)0.0190 (12)0.001 (2)0.0014 (14)−0.0066 (13)
C140.045 (3)0.034 (2)0.0265 (14)0.002 (2)−0.0003 (18)−0.0135 (14)
C150.039 (3)0.0284 (18)0.0339 (14)0.0011 (19)0.0039 (19)−0.0061 (13)
C160.039 (3)0.0237 (19)0.0223 (13)0.000 (2)−0.0014 (16)0.0005 (12)
C170.028 (3)0.034 (2)0.0207 (14)−0.003 (2)−0.0004 (16)0.0007 (13)
C180.049 (3)0.038 (2)0.0294 (14)−0.002 (2)−0.0001 (18)0.0080 (13)
C210.029 (2)0.027 (2)0.0190 (13)0.0006 (18)0.0024 (13)−0.0059 (14)
C220.026 (3)0.030 (2)0.0235 (16)0.0050 (17)0.0031 (14)0.0010 (13)
C230.028 (2)0.036 (2)0.0275 (15)0.0040 (18)−0.0051 (15)−0.0031 (17)
C240.039 (3)0.036 (2)0.0298 (16)−0.0001 (19)−0.0028 (17)−0.0144 (17)
C250.035 (3)0.026 (2)0.0343 (16)−0.0007 (17)0.0052 (19)−0.0028 (16)
C260.038 (3)0.029 (2)0.0214 (14)−0.0001 (19)0.0012 (15)0.0031 (15)
C270.030 (3)0.036 (2)0.0202 (14)0.005 (2)0.0016 (15)0.0023 (15)
C280.050 (3)0.035 (2)0.0326 (18)0.005 (2)−0.0053 (17)0.0124 (15)
S1—C111.780 (3)C13—C141.360 (5)
S1—C11.821 (3)C13—H130.95
S2—C211.773 (3)C14—C151.395 (4)
S2—C41.822 (3)C14—H140.95
O1—C171.211 (4)C15—C161.389 (4)
O2—C171.344 (3)C15—H150.95
O2—C181.445 (4)C16—H160.95
O3—C271.215 (4)C18—H18A0.98
O4—C271.352 (4)C18—H18B0.98
O4—C281.454 (4)C18—H18C0.98
C1—C21.538 (4)C21—C261.380 (5)
C1—H1A0.99C21—C221.416 (4)
C1—H1B0.99C22—C231.395 (4)
C2—C31.529 (3)C22—C271.465 (5)
C2—H2A0.99C23—C241.379 (5)
C2—H2B0.99C23—H230.95
C3—C41.526 (4)C24—C251.392 (4)
C3—H3A0.99C24—H240.95
C3—H3B0.99C25—C261.395 (5)
C4—H4A0.99C25—H250.95
C4—H4B0.99C26—H260.95
C11—C161.379 (5)C28—H28A0.98
C11—C121.421 (4)C28—H28B0.98
C12—C131.404 (4)C28—H28C0.98
C12—C171.474 (4)
C11—S1—C1102.59 (14)C16—C15—H15120.3
C21—S2—C4102.96 (15)C14—C15—H15120.3
C17—O2—C18115.6 (2)C11—C16—C15122.0 (3)
C27—O4—C28115.1 (3)C11—C16—H16119
C2—C1—S1107.3 (2)C15—C16—H16119
C2—C1—H1A110.3O1—C17—O2121.9 (3)
S1—C1—H1A110.3O1—C17—C12124.8 (2)
C2—C1—H1B110.3O2—C17—C12113.3 (3)
S1—C1—H1B110.3O2—C18—H18A109.5
H1A—C1—H1B108.5O2—C18—H18B109.5
C3—C2—C1111.1 (2)H18A—C18—H18B109.5
C3—C2—H2A109.4O2—C18—H18C109.5
C1—C2—H2A109.4H18A—C18—H18C109.5
C3—C2—H2B109.4H18B—C18—H18C109.5
C1—C2—H2B109.4C26—C21—C22118.3 (3)
H2A—C2—H2B108C26—C21—S2121.2 (2)
C4—C3—C2110.5 (2)C22—C21—S2120.5 (3)
C4—C3—H3A109.5C23—C22—C21119.4 (3)
C2—C3—H3A109.5C23—C22—C27119.8 (3)
C4—C3—H3B109.5C21—C22—C27120.8 (3)
C2—C3—H3B109.5C24—C23—C22121.4 (3)
H3A—C3—H3B108.1C24—C23—H23119.3
C3—C4—S2106.9 (2)C22—C23—H23119.3
C3—C4—H4A110.3C23—C24—C25119.4 (3)
S2—C4—H4A110.3C23—C24—H24120.3
C3—C4—H4B110.3C25—C24—H24120.3
S2—C4—H4B110.3C24—C25—C26119.5 (3)
H4A—C4—H4B108.6C24—C25—H25120.2
C16—C11—C12118.3 (3)C26—C25—H25120.2
C16—C11—S1121.6 (2)C21—C26—C25121.9 (3)
C12—C11—S1120.1 (3)C21—C26—H26119
C13—C12—C11118.8 (3)C25—C26—H26119
C13—C12—C17119.8 (3)O3—C27—O4120.9 (3)
C11—C12—C17121.4 (3)O3—C27—C22125.5 (3)
C14—C13—C12121.7 (3)O4—C27—C22113.6 (3)
C14—C13—H13119.2O4—C28—H28A109.5
C12—C13—H13119.2O4—C28—H28B109.5
C13—C14—C15119.8 (3)H28A—C28—H28B109.5
C13—C14—H14120.1O4—C28—H28C109.5
C15—C14—H14120.1H28A—C28—H28C109.5
C16—C15—C14119.4 (3)H28B—C28—H28C109.5
C11—S1—C1—C2177.5 (3)C13—C12—C17—O22.0 (6)
S1—C1—C2—C3−178.5 (3)C11—C12—C17—O2−176.6 (4)
C1—C2—C3—C4176.1 (4)C4—S2—C21—C267.4 (4)
C2—C3—C4—S2−176.2 (3)C4—S2—C21—C22−171.7 (3)
C21—S2—C4—C3168.3 (3)C26—C21—C22—C23−0.9 (6)
C1—S1—C11—C162.2 (4)S2—C21—C22—C23178.2 (3)
C1—S1—C11—C12−178.1 (4)C26—C21—C22—C27179.2 (4)
C16—C11—C12—C13−1.6 (7)S2—C21—C22—C27−1.6 (5)
S1—C11—C12—C13178.7 (3)C21—C22—C23—C240.3 (6)
C16—C11—C12—C17177.0 (4)C27—C22—C23—C24−179.9 (4)
S1—C11—C12—C17−2.7 (6)C22—C23—C24—C25−0.1 (6)
C11—C12—C13—C141.0 (7)C23—C24—C25—C260.5 (6)
C17—C12—C13—C14−177.6 (4)C22—C21—C26—C251.3 (6)
C12—C13—C14—C150.9 (7)S2—C21—C26—C25−177.8 (3)
C13—C14—C15—C16−2.2 (7)C24—C25—C26—C21−1.2 (6)
C12—C11—C16—C150.3 (7)C28—O4—C27—O31.6 (5)
S1—C11—C16—C15−180.0 (3)C28—O4—C27—C22−179.1 (3)
C14—C15—C16—C111.6 (7)C23—C22—C27—O3177.5 (3)
C18—O2—C17—O1−4.3 (6)C21—C22—C27—O3−2.7 (7)
C18—O2—C17—C12174.2 (4)C23—C22—C27—O4−1.8 (6)
C13—C12—C17—O1−179.6 (4)C21—C22—C27—O4178.1 (3)
C11—C12—C17—O11.8 (7)
D—H···AD—HH···AD···AD—H···A
C13—H13···O20.952.362.705 (4)101
C23—H23···O40.952.352.701 (5)101
C15—H15···O3i0.952.453.123 (5)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15⋯O3i0.952.453.123 (5)127

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  N-(triphenylmethylsulfanyl)phthalimide.

Authors:  Iván Brito; Danitza Vargas; Andrea Reyes; Alejandro Cárdenas; Matías López-Rodríguez
Journal:  Acta Crystallogr C       Date:  2005-03-11       Impact factor: 1.172

4.  Design and crystal structures of triple helicates with crystallographic idealized D3 symmetry: the role of side chain effect on crystal packing.

Authors:  Guo Dong; Pang Ke-liang; Duan Chun-ying; He Cheng; Meng Qing-jin
Journal:  Inorg Chem       Date:  2002-11-18       Impact factor: 5.165

5.  The effects of anion variation and ligand derivatization on silver coordination networks based upon weaker interactions.

Authors:  N J Melcer; G D Enright; J A Ripmeester; G K Shimizu
Journal:  Inorg Chem       Date:  2001-08-27       Impact factor: 5.165

  5 in total

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