Literature DB >> 21578408

Cinnamyl 8-meth-oxy-2-oxo-2H-chromene-3-carboxyl-ate.

Cui-Lian Xu, Shan-Yu Liu, Cai-Xia Wang, Ming-Qin Zhao.   

Abstract

In the crystal structure of the title compound, C(20)H(16)O(5), the mol-ecule assumes an E configuration with the benzene ring and chromenecarboxyl group located on opposite ends of the C=C double bond. The chromene ring system and benzene ring are oriented at a dihedral angle of 74.66 (12)°. Weak inter-molecular C-H⋯O hydrogen bonding is present in the crystal structure.

Entities:  

Year:  2009        PMID: 21578408      PMCID: PMC2971202          DOI: 10.1107/S1600536809041725

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of coumarins and related compounds, see: Hoult & Paya (1996 ▶); Yu et al. (2003 ▶, 2007 ▶); Finn et al. (2004 ▶).

Experimental

Crystal data

C20H16O5 M = 336.33 Monoclinic, a = 19.226 (4) Å b = 9.5483 (19) Å c = 9.0046 (18) Å β = 90.97 (3)° V = 1652.8 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.20 × 0.17 × 0.17 mm

Data collection

Bruker SMART CCD area detector diffractometer Absorption correction: none 4903 measured reflections 2834 independent reflections 2157 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.155 S = 1.15 2834 reflections 228 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809041725/xu2613sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809041725/xu2613Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16O5F(000) = 704
Mr = 336.33Dx = 1.352 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2834 reflections
a = 19.226 (4) Åθ = 3.1–24.2°
b = 9.5483 (19) ŵ = 0.10 mm1
c = 9.0046 (18) ÅT = 296 K
β = 90.97 (3)°Block, colorless
V = 1652.8 (6) Å30.20 × 0.17 × 0.17 mm
Z = 4
Bruker SMART CCD area detector diffractometer2157 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.053
graphiteθmax = 25.0°, θmin = 1.1°
ω scansh = −22→22
4903 measured reflectionsk = −11→11
2834 independent reflectionsl = 0→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.065H-atom parameters constrained
wR(F2) = 0.155w = 1/[σ2(Fo2) + (0.0659P)2 + 0.2012P] where P = (Fo2 + 2Fc2)/3
S = 1.15(Δ/σ)max = 0.001
2834 reflectionsΔρmax = 0.24 e Å3
228 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.024 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.04001 (9)0.88854 (18)0.70962 (19)0.0610 (5)
O20.11713 (7)0.72996 (15)0.54027 (17)0.0463 (4)
O30.15130 (10)0.51497 (17)0.4995 (2)0.0705 (6)
O40.25790 (11)0.4732 (2)0.3000 (3)0.0885 (7)
O50.28952 (8)0.66346 (19)0.17300 (19)0.0617 (5)
C10.12199 (11)0.8722 (2)0.5210 (2)0.0414 (6)
C20.08113 (11)0.9568 (3)0.6115 (3)0.0497 (6)
C30.08597 (14)1.0996 (3)0.5946 (3)0.0652 (8)
H3A0.05931.15780.65360.078*
C40.13001 (15)1.1585 (3)0.4910 (3)0.0710 (8)
H4A0.13231.25540.48160.085*
C50.17013 (13)1.0757 (3)0.4023 (3)0.0605 (7)
H5A0.19921.11600.33280.073*
C60.16698 (11)0.9293 (2)0.4174 (3)0.0445 (6)
C70.20856 (11)0.8339 (2)0.3351 (2)0.0450 (6)
H7A0.23830.86930.26380.054*
C80.20641 (10)0.6940 (2)0.3568 (2)0.0429 (6)
C90.15868 (11)0.6355 (2)0.4665 (3)0.0460 (6)
C100.25260 (12)0.5959 (3)0.2770 (3)0.0525 (6)
C11−0.00432 (15)0.9739 (3)0.7994 (3)0.0743 (8)
H11A−0.03140.91500.86260.112*
H11B−0.03491.02780.73620.112*
H11C0.02371.03600.85920.112*
C120.33877 (13)0.5785 (3)0.0894 (3)0.0697 (8)
H12A0.34700.6224−0.00590.084*
H12B0.31890.48670.07090.084*
C130.40569 (13)0.5629 (3)0.1714 (3)0.0646 (7)
H13A0.40530.51420.26080.078*
C140.46490 (14)0.6123 (3)0.1279 (3)0.0639 (7)
H14A0.46400.66130.03860.077*
C150.53343 (12)0.6000 (3)0.2031 (3)0.0560 (7)
C160.58725 (14)0.6863 (3)0.1617 (4)0.0741 (9)
H16A0.58040.74810.08300.089*
C170.65113 (15)0.6830 (3)0.2345 (5)0.0831 (10)
H17A0.68610.74450.20670.100*
C180.66314 (14)0.5891 (3)0.3481 (4)0.0741 (9)
H18A0.70590.58740.39800.089*
C190.61138 (15)0.4981 (4)0.3866 (3)0.0763 (9)
H19A0.61950.43200.46080.092*
C200.54716 (14)0.5041 (3)0.3158 (3)0.0694 (8)
H20A0.51230.44260.34430.083*
U11U22U33U12U13U23
O10.0600 (10)0.0639 (11)0.0597 (11)0.0079 (9)0.0171 (8)−0.0059 (9)
O20.0487 (9)0.0410 (9)0.0494 (10)0.0015 (7)0.0053 (7)−0.0008 (7)
O30.0869 (14)0.0375 (10)0.0877 (14)0.0016 (9)0.0227 (10)0.0041 (9)
O40.1028 (16)0.0562 (13)0.1075 (17)0.0296 (11)0.0322 (13)0.0052 (11)
O50.0522 (10)0.0719 (12)0.0615 (12)0.0113 (9)0.0125 (8)−0.0069 (9)
C10.0391 (12)0.0364 (12)0.0486 (14)0.0004 (10)−0.0026 (10)−0.0021 (10)
C20.0444 (13)0.0505 (15)0.0541 (15)0.0053 (11)−0.0019 (11)−0.0051 (12)
C30.0668 (17)0.0523 (16)0.0767 (19)0.0122 (13)0.0061 (14)−0.0112 (14)
C40.0784 (19)0.0382 (14)0.096 (2)0.0072 (13)0.0005 (17)−0.0028 (15)
C50.0590 (16)0.0446 (14)0.0783 (19)−0.0029 (12)0.0079 (13)0.0063 (13)
C60.0394 (12)0.0392 (12)0.0550 (15)0.0021 (10)−0.0010 (10)−0.0012 (11)
C70.0370 (12)0.0503 (14)0.0477 (14)−0.0026 (10)0.0007 (9)0.0011 (11)
C80.0364 (12)0.0444 (13)0.0476 (14)0.0026 (10)−0.0039 (10)−0.0026 (10)
C90.0472 (13)0.0401 (14)0.0506 (15)0.0028 (10)−0.0024 (10)−0.0044 (11)
C100.0470 (14)0.0573 (16)0.0531 (16)0.0102 (12)−0.0031 (11)−0.0058 (13)
C110.0676 (18)0.090 (2)0.0663 (19)0.0167 (16)0.0152 (14)−0.0173 (16)
C120.0520 (16)0.093 (2)0.0642 (18)0.0203 (14)0.0082 (13)−0.0162 (16)
C130.0517 (15)0.0826 (19)0.0598 (17)0.0113 (14)0.0072 (12)−0.0058 (15)
C140.0605 (16)0.0681 (17)0.0635 (17)0.0112 (14)0.0127 (13)−0.0002 (14)
C150.0484 (14)0.0513 (14)0.0690 (18)0.0042 (12)0.0139 (12)−0.0074 (13)
C160.0617 (18)0.0521 (16)0.109 (2)0.0106 (14)0.0295 (16)0.0079 (16)
C170.0542 (18)0.0535 (17)0.143 (3)−0.0068 (14)0.0329 (18)−0.012 (2)
C180.0490 (16)0.078 (2)0.096 (2)0.0006 (15)0.0078 (15)−0.0310 (19)
C190.0669 (18)0.091 (2)0.071 (2)0.0004 (17)0.0080 (15)0.0048 (16)
C200.0549 (16)0.0741 (19)0.080 (2)−0.0136 (14)0.0122 (14)0.0070 (16)
O1—C21.362 (3)C11—H11A0.9600
O1—C111.438 (3)C11—H11B0.9600
O2—C11.373 (3)C11—H11C0.9600
O2—C91.382 (3)C12—C131.480 (4)
O3—C91.198 (3)C12—H12A0.9700
O4—C101.194 (3)C12—H12B0.9700
O5—C101.349 (3)C13—C141.299 (4)
O5—C121.465 (3)C13—H13A0.9300
C1—C61.394 (3)C14—C151.476 (4)
C1—C21.398 (3)C14—H14A0.9300
C2—C31.375 (4)C15—C161.379 (3)
C3—C41.389 (4)C15—C201.389 (4)
C3—H3A0.9300C16—C171.383 (4)
C4—C51.370 (4)C16—H16A0.9300
C4—H4A0.9300C17—C181.377 (4)
C5—C61.405 (3)C17—H17A0.9300
C5—H5A0.9300C18—C191.370 (4)
C6—C71.428 (3)C18—H18A0.9300
C7—C81.351 (3)C19—C201.381 (4)
C7—H7A0.9300C19—H19A0.9300
C8—C91.469 (3)C20—H20A0.9300
C8—C101.485 (3)
C2—O1—C11116.7 (2)H11A—C11—H11B109.5
C1—O2—C9122.93 (18)O1—C11—H11C109.5
C10—O5—C12116.4 (2)H11A—C11—H11C109.5
O2—C1—C6121.0 (2)H11B—C11—H11C109.5
O2—C1—C2117.3 (2)O5—C12—C13111.3 (2)
C6—C1—C2121.7 (2)O5—C12—H12A109.4
O1—C2—C3126.0 (2)C13—C12—H12A109.4
O1—C2—C1116.1 (2)O5—C12—H12B109.4
C3—C2—C1117.9 (2)C13—C12—H12B109.4
C2—C3—C4121.3 (3)H12A—C12—H12B108.0
C2—C3—H3A119.4C14—C13—C12124.9 (3)
C4—C3—H3A119.4C14—C13—H13A117.6
C5—C4—C3120.9 (2)C12—C13—H13A117.6
C5—C4—H4A119.6C13—C14—C15127.8 (3)
C3—C4—H4A119.6C13—C14—H14A116.1
C4—C5—C6119.5 (2)C15—C14—H14A116.1
C4—C5—H5A120.3C16—C15—C20117.2 (3)
C6—C5—H5A120.3C16—C15—C14119.8 (3)
C1—C6—C5118.8 (2)C20—C15—C14123.0 (2)
C1—C6—C7117.2 (2)C15—C16—C17121.5 (3)
C5—C6—C7124.0 (2)C15—C16—H16A119.2
C8—C7—C6122.5 (2)C17—C16—H16A119.2
C8—C7—H7A118.7C18—C17—C16120.2 (3)
C6—C7—H7A118.7C18—C17—H17A119.9
C7—C8—C9119.6 (2)C16—C17—H17A119.9
C7—C8—C10122.2 (2)C19—C18—C17119.2 (3)
C9—C8—C10118.1 (2)C19—C18—H18A120.4
O3—C9—O2115.8 (2)C17—C18—H18A120.4
O3—C9—C8127.6 (2)C18—C19—C20120.3 (3)
O2—C9—C8116.62 (19)C18—C19—H19A119.9
O4—C10—O5123.1 (2)C20—C19—H19A119.9
O4—C10—C8125.8 (3)C19—C20—C15121.5 (3)
O5—C10—C8111.2 (2)C19—C20—H20A119.3
O1—C11—H11A109.5C15—C20—H20A119.3
O1—C11—H11B109.5
C9—O2—C1—C64.0 (3)C7—C8—C9—O3−179.1 (2)
C9—O2—C1—C2−174.71 (19)C10—C8—C9—O3−1.1 (3)
C11—O1—C2—C32.6 (4)C7—C8—C9—O21.1 (3)
C11—O1—C2—C1−177.7 (2)C10—C8—C9—O2179.11 (18)
O2—C1—C2—O1−0.4 (3)C12—O5—C10—O4−1.3 (3)
C6—C1—C2—O1−179.15 (19)C12—O5—C10—C8178.20 (18)
O2—C1—C2—C3179.3 (2)C7—C8—C10—O4172.9 (3)
C6—C1—C2—C30.6 (3)C9—C8—C10—O4−5.0 (4)
O1—C2—C3—C4179.8 (2)C7—C8—C10—O5−6.5 (3)
C1—C2—C3—C40.0 (4)C9—C8—C10—O5175.55 (18)
C2—C3—C4—C5−0.1 (4)C10—O5—C12—C13−83.6 (3)
C3—C4—C5—C6−0.5 (4)O5—C12—C13—C14−115.1 (3)
O2—C1—C6—C5−179.8 (2)C12—C13—C14—C15−179.5 (3)
C2—C1—C6—C5−1.2 (3)C13—C14—C15—C16−164.1 (3)
O2—C1—C6—C7−1.3 (3)C13—C14—C15—C2015.9 (4)
C2—C1—C6—C7177.37 (19)C20—C15—C16—C17−3.4 (4)
C4—C5—C6—C11.1 (4)C14—C15—C16—C17176.6 (3)
C4—C5—C6—C7−177.4 (2)C15—C16—C17—C182.2 (4)
C1—C6—C7—C8−1.3 (3)C16—C17—C18—C190.7 (4)
C5—C6—C7—C8177.1 (2)C17—C18—C19—C20−2.3 (4)
C6—C7—C8—C91.4 (3)C18—C19—C20—C150.9 (4)
C6—C7—C8—C10−176.50 (19)C16—C15—C20—C191.9 (4)
C1—O2—C9—O3176.3 (2)C14—C15—C20—C19−178.2 (3)
C1—O2—C9—C8−3.8 (3)
D—H···AD—HH···AD···AD—H···A
C4—H4A···O3i0.932.513.429 (3)170
C17—H17A···O4ii0.932.443.294 (4)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4A⋯O3i0.932.513.429 (3)170
C17—H17A⋯O4ii0.932.443.294 (4)153

Symmetry codes: (i) ; (ii) .

  5 in total

Review 1.  Recent progress in the development of coumarin derivatives as potent anti-HIV agents.

Authors:  Donglei Yu; Madoka Suzuki; Lan Xie; Susan L Morris-Natschke; Kuo-Hsiung Lee
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Review 2.  New developments in natural products-based anti-AIDS research.

Authors:  Donglei Yu; Susan L Morris-Natschke; Kuo-Hsiung Lee
Journal:  Med Res Rev       Date:  2007-01       Impact factor: 12.944

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  A study of the role of cell cycle events mediating the action of coumarin derivatives in human malignant melanoma cells.

Authors:  Gregory J Finn; Bernadette S Creaven; Denise A Egan
Journal:  Cancer Lett       Date:  2004-10-08       Impact factor: 8.679

Review 5.  Pharmacological and biochemical actions of simple coumarins: natural products with therapeutic potential.

Authors:  J R Hoult; M Payá
Journal:  Gen Pharmacol       Date:  1996-06
  5 in total

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