Literature DB >> 21578376

2,3-[(3,6-Dioxaoctane-1,8-diyl)bis(sul-fanediylmethylene)]-6,7-bis(methylsulfanyl)-1,4,5,8-tetra-thia-fulvalene.

Rui-Bin Hou, Bao Li, Tie Chen, Bing-Zhu Yin, Li-Xin Wu.   

Abstract

In the title mol-ecule, C(16)H(22)S(8)O(2), two S atoms, two O atoms and ten C atoms form a 14-membered ring with a boat conformation. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules into dimers which are further connected into a chain along the a axis by C-H⋯S hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578376      PMCID: PMC2971456          DOI: 10.1107/S1600536809041804

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Over the past three decades, chemical groups such as crown ethers have been extensively modified on the tetra­thia­fulvalene (TTF) skeleton, see: Jeppesen & Becher (2003 ▶). For details of the synthesis, see: Chen et al. (2005 ▶). For a related structure, see: Hou et al. (2009 ▶).

Experimental

Crystal data

C16H22O2S8 M = 502.82 Triclinic, a = 9.1748 (18) Å b = 10.177 (2) Å c = 14.273 (3) Å α = 98.49 (3)° β = 105.58 (3)° γ = 113.33 (3)° V = 1129.1 (4) Å3 Z = 2 Mo Kα radiation μ = 0.80 mm−1 T = 291 K 0.14 × 0.12 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.896, T max = 0.910 8752 measured reflections 3948 independent reflections 3345 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.128 S = 1.17 3948 reflections 237 parameters H-atom parameters constrained Δρmax = 0.89 e Å−3 Δρmin = −0.47 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC and Rigaku, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809041804/hg2569sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809041804/hg2569Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H22O2S8Z = 2
Mr = 502.82F(000) = 524
Triclinic, P1Dx = 1.479 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.1748 (18) ÅCell parameters from 9031 reflections
b = 10.177 (2) Åθ = 3.1–27.5°
c = 14.273 (3) ŵ = 0.80 mm1
α = 98.49 (3)°T = 291 K
β = 105.58 (3)°Block, yellow
γ = 113.33 (3)°0.14 × 0.12 × 0.12 mm
V = 1129.1 (4) Å3
Rigaku R-AXIS RAPID diffractometer3948 independent reflections
Radiation source: fine-focus sealed tube3345 reflections with I > 2σ(I)
graphiteRint = 0.014
ω scansθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.896, Tmax = 0.910k = −12→12
8752 measured reflectionsl = −16→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.0734P)2 + 0.3957P] where P = (Fo2 + 2Fc2)/3
3948 reflections(Δ/σ)max = 0.011
237 parametersΔρmax = 0.89 e Å3
0 restraintsΔρmin = −0.47 e Å3
Experimental. (See detailed section in the paper)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.3188 (5)1.3283 (5)1.4807 (3)0.0753 (11)
H1A1.37461.27091.46390.113*
H1B1.39381.40781.54210.113*
H1C1.28971.36961.42640.113*
C21.0102 (4)1.0784 (3)1.3801 (2)0.0407 (6)
C30.9324 (3)0.8957 (3)1.2084 (2)0.0391 (6)
C40.9441 (3)0.8476 (3)1.1199 (2)0.0385 (6)
C51.0573 (4)0.8202 (3)0.9740 (2)0.0390 (6)
C61.1888 (4)0.8549 (3)0.9252 (2)0.0468 (7)
H6A1.23290.95910.92620.056*
H6B1.13470.79500.85480.056*
C71.2681 (5)0.6217 (4)0.9544 (3)0.0651 (9)
H7A1.33270.59271.00560.078*
H7B1.15420.58550.95620.078*
C81.2573 (7)0.5487 (5)0.8545 (4)0.0880 (13)
H8A1.36740.59340.84750.106*
H8B1.22270.44330.84670.106*
C91.0860 (8)0.4660 (7)0.6849 (4)0.1128 (19)
H9A1.17870.49450.65950.135*
H9B1.05650.36620.69200.135*
C100.9459 (9)0.4676 (9)0.6175 (4)0.131 (3)
H10A0.89740.38280.55800.157*
H10B0.98700.55700.59580.157*
C110.7180 (7)0.3431 (5)0.6827 (4)0.0914 (14)
H11A0.77410.28010.69020.110*
H11B0.60440.28360.63210.110*
C120.7074 (4)0.4011 (4)0.7818 (3)0.0623 (9)
H12A0.82140.45600.83250.075*
H12B0.64410.31730.80330.075*
C130.7897 (4)0.7058 (4)0.8160 (2)0.0529 (7)
H13A0.86430.70220.77980.063*
H13B0.75030.77710.79750.063*
C140.8897 (4)0.7596 (3)0.9285 (2)0.0396 (6)
C150.8397 (4)1.0198 (3)1.3351 (2)0.0443 (6)
C160.5893 (6)1.1099 (6)1.2868 (4)0.0912 (14)
H16A0.66541.19111.26980.137*
H16B0.51231.13801.30800.137*
H16C0.52581.02381.22830.137*
O11.1364 (5)0.5674 (4)0.7799 (2)0.0980 (10)
O20.8095 (6)0.4633 (5)0.6516 (3)0.1180 (14)
S11.12983 (11)1.21034 (9)1.49854 (6)0.0562 (2)
S21.10990 (9)0.99321 (8)1.32208 (5)0.0452 (2)
S31.13813 (9)0.87356 (9)1.10784 (5)0.0456 (2)
S41.36459 (10)0.82043 (9)0.98642 (7)0.0545 (2)
S50.60655 (10)0.52141 (11)0.77587 (7)0.0664 (3)
S60.76769 (9)0.74362 (8)1.00707 (5)0.0456 (2)
S70.74108 (9)0.86596 (9)1.22600 (6)0.0486 (2)
S80.71029 (12)1.06618 (12)1.38866 (7)0.0675 (3)
U11U22U33U12U13U23
C10.062 (2)0.072 (3)0.051 (2)0.0072 (19)0.0037 (16)−0.0007 (18)
C20.0527 (16)0.0355 (14)0.0323 (14)0.0190 (12)0.0161 (12)0.0072 (11)
C30.0420 (14)0.0340 (14)0.0362 (14)0.0157 (12)0.0118 (11)0.0049 (11)
C40.0411 (14)0.0338 (14)0.0360 (14)0.0174 (11)0.0103 (11)0.0037 (11)
C50.0522 (16)0.0361 (14)0.0335 (14)0.0279 (13)0.0129 (12)0.0057 (11)
C60.0524 (16)0.0505 (17)0.0488 (17)0.0315 (14)0.0221 (13)0.0149 (14)
C70.082 (2)0.054 (2)0.076 (2)0.0400 (19)0.037 (2)0.0251 (18)
C80.121 (4)0.068 (3)0.091 (3)0.057 (3)0.046 (3)0.013 (2)
C90.122 (4)0.122 (4)0.080 (3)0.051 (4)0.046 (3)−0.016 (3)
C100.187 (6)0.230 (8)0.069 (3)0.164 (6)0.076 (4)0.046 (4)
C110.117 (4)0.077 (3)0.089 (3)0.063 (3)0.030 (3)0.008 (2)
C120.0570 (19)0.054 (2)0.062 (2)0.0141 (16)0.0183 (16)0.0165 (17)
C130.0618 (18)0.0575 (19)0.0353 (16)0.0327 (16)0.0074 (13)0.0055 (14)
C140.0506 (15)0.0340 (14)0.0346 (14)0.0240 (12)0.0116 (12)0.0046 (11)
C150.0539 (16)0.0419 (16)0.0398 (15)0.0208 (13)0.0233 (13)0.0099 (12)
C160.073 (3)0.117 (4)0.094 (3)0.062 (3)0.026 (2)0.014 (3)
O10.123 (3)0.077 (2)0.0679 (19)0.0270 (19)0.0434 (18)−0.0154 (15)
O20.174 (4)0.173 (4)0.125 (3)0.139 (3)0.107 (3)0.092 (3)
S10.0735 (5)0.0488 (5)0.0330 (4)0.0198 (4)0.0176 (4)0.0014 (3)
S20.0465 (4)0.0487 (4)0.0353 (4)0.0234 (3)0.0099 (3)0.0029 (3)
S30.0433 (4)0.0557 (5)0.0351 (4)0.0277 (3)0.0082 (3)0.0015 (3)
S40.0418 (4)0.0531 (5)0.0658 (5)0.0231 (4)0.0160 (4)0.0109 (4)
S50.0432 (4)0.0805 (6)0.0507 (5)0.0237 (4)0.0052 (3)−0.0148 (4)
S60.0404 (4)0.0461 (4)0.0384 (4)0.0164 (3)0.0089 (3)−0.0005 (3)
S70.0433 (4)0.0459 (4)0.0454 (4)0.0121 (3)0.0176 (3)0.0029 (3)
S80.0690 (5)0.0832 (7)0.0609 (6)0.0388 (5)0.0379 (4)0.0115 (5)
C1—S11.786 (4)C9—C101.391 (8)
C1—H1A0.9600C9—O11.410 (5)
C1—H1B0.9600C9—H9A0.9700
C1—H1C0.9600C9—H9B0.9700
C2—C151.351 (4)C10—O21.448 (6)
C2—S11.741 (3)C10—H10A0.9700
C2—S21.760 (3)C10—H10B0.9700
C3—C41.335 (4)C11—O21.394 (6)
C3—S71.753 (3)C11—C121.493 (6)
C3—S21.759 (3)C11—H11A0.9700
C4—S61.753 (3)C11—H11B0.9700
C4—S31.753 (3)C12—S51.802 (4)
C5—C141.327 (4)C12—H12A0.9700
C5—C61.500 (4)C12—H12B0.9700
C5—S31.763 (3)C13—C141.506 (4)
C6—S41.809 (3)C13—S51.828 (4)
C6—H6A0.9700C13—H13A0.9700
C6—H6B0.9700C13—H13B0.9700
C7—C81.465 (6)C14—S61.767 (3)
C7—S41.782 (4)C15—S81.744 (3)
C7—H7A0.9700C15—S71.760 (3)
C7—H7B0.9700C16—S81.806 (5)
C8—O11.411 (6)C16—H16A0.9600
C8—H8A0.9700C16—H16B0.9600
C8—H8B0.9700C16—H16C0.9600
S1—C1—H1A109.5O2—C10—H10A107.7
S1—C1—H1B109.5C9—C10—H10B107.7
H1A—C1—H1B109.5O2—C10—H10B107.7
S1—C1—H1C109.5H10A—C10—H10B107.1
H1A—C1—H1C109.5O2—C11—C12109.1 (4)
H1B—C1—H1C109.5O2—C11—H11A109.9
C15—C2—S1124.6 (2)C12—C11—H11A109.9
C15—C2—S2116.2 (2)O2—C11—H11B109.9
S1—C2—S2118.48 (17)C12—C11—H11B109.9
C4—C3—S7124.5 (2)H11A—C11—H11B108.3
C4—C3—S2123.0 (2)C11—C12—S5113.1 (3)
S7—C3—S2112.44 (15)C11—C12—H12A109.0
C3—C4—S6123.6 (2)S5—C12—H12A108.9
C3—C4—S3122.6 (2)C11—C12—H12B108.9
S6—C4—S3113.75 (15)S5—C12—H12B109.0
C14—C5—C6127.7 (3)H12A—C12—H12B107.8
C14—C5—S3116.9 (2)C14—C13—S5113.2 (2)
C6—C5—S3115.3 (2)C14—C13—H13A108.9
C5—C6—S4113.8 (2)S5—C13—H13A108.9
C5—C6—H6A108.8C14—C13—H13B108.9
S4—C6—H6A108.8S5—C13—H13B108.9
C5—C6—H6B108.8H13A—C13—H13B107.7
S4—C6—H6B108.8C5—C14—C13127.3 (3)
H6A—C6—H6B107.7C5—C14—S6117.3 (2)
C8—C7—S4114.3 (3)C13—C14—S6115.4 (2)
C8—C7—H7A108.7C2—C15—S8124.2 (2)
S4—C7—H7A108.7C2—C15—S7116.8 (2)
C8—C7—H7B108.7S8—C15—S7118.15 (17)
S4—C7—H7B108.7S8—C16—H16A109.5
H7A—C7—H7B107.6S8—C16—H16B109.5
O1—C8—C7108.0 (3)H16A—C16—H16B109.5
O1—C8—H8A110.1S8—C16—H16C109.5
C7—C8—H8A110.1H16A—C16—H16C109.5
O1—C8—H8B110.1H16B—C16—H16C109.5
C7—C8—H8B110.1C9—O1—C8110.0 (4)
H8A—C8—H8B108.4C11—O2—C10121.3 (4)
C10—C9—O1108.7 (5)C2—S1—C1102.60 (16)
C10—C9—H9A109.9C3—S2—C294.09 (13)
O1—C9—H9A109.9C4—S3—C594.92 (13)
C10—C9—H9B109.9C7—S4—C6102.45 (18)
O1—C9—H9B109.9C12—S5—C13101.68 (16)
H9A—C9—H9B108.3C4—S6—C1494.74 (13)
C9—C10—O2118.5 (4)C3—S7—C1593.90 (14)
C9—C10—H10A107.7C15—S8—C16101.88 (18)
D—H···AD—HH···AD···AD—H···A
C8—H8A···S5i0.972.943.762 (5)143
C1—H1C···O2ii0.962.493.379 (6)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯S5i0.972.943.762 (5)143
C1—H1C⋯O2ii0.962.493.379 (6)154

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2,3-(3,6,9-trioxaundecane-1,11-diyldithio)-1,4,5,8-tetra-thia-fulvalene-6-carboxyl-ate.

Authors:  Rui-Bin Hou; Bao Li; Bing-Zhu Yin; Li-Xin Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-18

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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