Literature DB >> 21578285

2-(1,3-Dioxoisoindolin-2-yl)propanoic acid.

Abdul Rauf Raza, Aisha Saddiqa, M Nawaz Tahir, Muhammad Danish, Talat Majeed.   

Abstract

The crystal structure of the title compound, C(11)H(9)NO(4), consists of infinite one-dimensional polymeric chains due to inter-molecular O-H⋯O hydrogen bonds between the carboxyl-ate and carbonyl groups. The phthalimide ring system and the C-COO group are planar, with r.m.s. deviations of 0.0253 and 0.0067 Å, respectively, from their mean square planes and the dihedral angle between them is 66.41 (7)°. The mol-ecules are stabilized by C=O⋯π inter-actions and weak intra-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21578285      PMCID: PMC2970965          DOI: 10.1107/S1600536809040434

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal properties of isocoumarin, see: Matsuda et al. (1999 ▶). For related crystal structures, see: Li & Liang (2006 ▶); Raza et al. (2009 ▶); Wheeler et al. (2004 ▶). For the graph-set analysis of hydrogen-bond patterns in crystal structures, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H9NO4 M = 219.19 Monoclinic, a = 9.3056 (8) Å b = 5.9768 (4) Å c = 9.7583 (8) Å β = 110.988 (3)° V = 506.73 (7) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.30 × 0.25 × 0.23 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.968, T max = 0.974 5705 measured reflections 1381 independent reflections 1302 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.082 S = 1.06 1381 reflections 153 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.13 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809040434/si2209sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809040434/si2209Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9NO4F(000) = 228
Mr = 219.19Dx = 1.437 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2319 reflections
a = 9.3056 (8) Åθ = 2.2–28.3°
b = 5.9768 (4) ŵ = 0.11 mm1
c = 9.7583 (8) ÅT = 296 K
β = 110.988 (3)°Prism, colorless
V = 506.73 (7) Å30.30 × 0.25 × 0.23 mm
Z = 2
Bruker Kappa APEXII CCD diffractometer1381 independent reflections
Radiation source: fine-focus sealed tube1302 reflections with I > 2σ(I)
graphiteRint = 0.023
Detector resolution: 7.40 pixels mm-1θmax = 28.3°, θmin = 2.2°
ω scansh = −12→12
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −7→7
Tmin = 0.968, Tmax = 0.974l = −12→13
5705 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0443P)2 + 0.0584P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
1381 reflectionsΔρmax = 0.16 e Å3
153 parametersΔρmin = −0.13 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.132 (13)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.34281 (15)1.0490 (3)0.31137 (15)0.0551 (4)
O2−0.00322 (14)0.5031 (3)0.09136 (15)0.0520 (4)
O30.41497 (15)0.5761 (3)0.42520 (15)0.0550 (5)
O40.57532 (16)0.5164 (5)0.30695 (19)0.0817 (7)
N10.19830 (14)0.7462 (3)0.19714 (14)0.0358 (4)
C10.22202 (19)0.9473 (3)0.27082 (17)0.0382 (4)
C20.07493 (19)1.0033 (3)0.28948 (17)0.0402 (5)
C30.0385 (3)1.1806 (4)0.3606 (2)0.0562 (6)
C4−0.1092 (3)1.1832 (5)0.3656 (2)0.0690 (8)
C5−0.2125 (3)1.0146 (6)0.3031 (2)0.0684 (9)
C6−0.1755 (2)0.8353 (5)0.2313 (2)0.0539 (6)
C7−0.02955 (19)0.8354 (3)0.22485 (16)0.0392 (4)
C80.04667 (17)0.6700 (3)0.16030 (16)0.0361 (4)
C90.31769 (19)0.6226 (4)0.1658 (2)0.0432 (5)
C100.45173 (19)0.5679 (4)0.3068 (2)0.0470 (5)
C110.3710 (3)0.7438 (6)0.0556 (2)0.0642 (8)
H30.109031.293590.403320.0674*
H3A0.490 (4)0.564 (6)0.497 (4)0.0660*
H4−0.138591.301020.411990.0828*
H5−0.309901.020720.309050.0820*
H6−0.245370.721110.189640.0647*
H90.273 (2)0.482 (5)0.125 (2)0.0518*
H11A0.284110.77266−0.032250.0962*
H11B0.444070.652390.032440.0962*
H11C0.418500.882890.096920.0962*
U11U22U33U12U13U23
O10.0464 (7)0.0507 (8)0.0545 (7)−0.0167 (7)0.0015 (5)−0.0070 (7)
O20.0474 (7)0.0484 (8)0.0563 (7)−0.0153 (6)0.0139 (6)−0.0153 (7)
O30.0409 (6)0.0693 (10)0.0459 (7)0.0152 (7)0.0046 (5)0.0073 (7)
O40.0412 (7)0.1193 (17)0.0869 (11)0.0252 (10)0.0257 (8)0.0306 (13)
N10.0288 (6)0.0363 (7)0.0363 (6)0.0000 (5)0.0042 (5)−0.0024 (6)
C10.0385 (8)0.0368 (8)0.0310 (7)−0.0025 (7)0.0024 (6)−0.0004 (6)
C20.0470 (9)0.0382 (9)0.0311 (7)0.0044 (7)0.0088 (6)0.0021 (7)
C30.0773 (13)0.0452 (11)0.0407 (8)0.0125 (10)0.0147 (9)−0.0034 (8)
C40.0893 (16)0.0758 (17)0.0461 (10)0.0356 (15)0.0293 (10)0.0019 (11)
C50.0612 (12)0.098 (2)0.0532 (11)0.0276 (14)0.0292 (10)0.0102 (13)
C60.0444 (9)0.0727 (14)0.0478 (9)0.0048 (10)0.0203 (8)0.0056 (10)
C70.0382 (7)0.0451 (9)0.0314 (7)0.0023 (7)0.0089 (6)0.0036 (7)
C80.0327 (7)0.0384 (8)0.0325 (7)−0.0032 (7)0.0060 (5)0.0005 (6)
C90.0346 (8)0.0473 (10)0.0444 (8)0.0009 (8)0.0102 (6)−0.0067 (8)
C100.0338 (7)0.0475 (10)0.0566 (10)0.0031 (8)0.0126 (7)0.0069 (9)
C110.0556 (11)0.0928 (18)0.0468 (10)0.0056 (13)0.0217 (8)0.0027 (12)
O1—C11.213 (2)C5—C61.390 (4)
O2—C81.200 (2)C6—C71.382 (3)
O3—C101.318 (2)C7—C81.482 (2)
O4—C101.190 (3)C9—C101.525 (3)
O3—H3A0.80 (4)C9—C111.520 (3)
N1—C81.402 (2)C3—H30.9300
N1—C91.455 (3)C4—H40.9300
N1—C11.377 (2)C5—H50.9300
C1—C21.482 (3)C6—H60.9300
C2—C31.374 (3)C9—H90.96 (3)
C2—C71.382 (2)C11—H11A0.9600
C3—C41.393 (4)C11—H11B0.9600
C4—C51.375 (4)C11—H11C0.9600
O1···O33.023 (2)C5···C11viii3.551 (3)
O1···C103.055 (3)C6···O4ix3.283 (3)
O1···C10i3.268 (3)C7···O2viii3.361 (2)
O1···C113.177 (3)C8···O2viii3.074 (2)
O1···O3ii2.750 (2)C8···C3iv3.534 (3)
O2···C7iii3.361 (2)C10···O13.055 (3)
O2···N1iii3.149 (2)C10···O1iv3.268 (3)
O2···C3iv3.168 (3)C11···C5iii3.551 (3)
O2···C8iii3.074 (2)C11···O13.177 (3)
O2···C1iii3.405 (2)C1···H3Aii2.91 (4)
O3···N12.615 (2)C1···H11C2.9300
O3···O13.023 (2)C2···H4x3.0100
O3···C12.912 (2)C3···H4x3.0800
O3···O1v2.750 (2)C5···H3x2.9800
O4···C6vi3.283 (3)C5···H11Aviii2.9200
O1···H3Aii1.96 (4)H3···C5xi2.9800
O1···H11C2.6300H3A···O1v1.96 (4)
O2···H11Aiii2.8300H3A···C1v2.91 (4)
O2···H92.48 (2)H4···O4xii2.8000
O4···H4vii2.8000H4···C2xi3.0100
O4···H6vi2.6400H4···C3xi3.0800
O4···H11B2.6400H6···O4ix2.6400
N1···O32.615 (2)H9···O22.48 (2)
N1···O2viii3.149 (2)H11A···O2viii2.8300
C1···O32.912 (2)H11A···C5iii2.9200
C1···O2viii3.405 (2)H11B···O42.6400
C3···C8i3.534 (3)H11C···O12.6300
C3···O2i3.168 (3)H11C···C12.9300
C10—O3—H3A110 (3)N1—C9—C10111.01 (15)
C1—N1—C9124.14 (15)O3—C10—C9113.43 (16)
C8—N1—C9123.75 (16)O4—C10—C9122.29 (18)
C1—N1—C8112.08 (15)O3—C10—O4124.24 (19)
O1—C1—C2129.45 (17)C2—C3—H3122.00
N1—C1—C2106.19 (15)C4—C3—H3122.00
O1—C1—N1124.35 (17)C3—C4—H4119.00
C1—C2—C3129.93 (19)C5—C4—H4119.00
C3—C2—C7122.00 (19)C4—C5—H5119.00
C1—C2—C7108.03 (15)C6—C5—H5119.00
C2—C3—C4116.8 (2)C5—C6—H6122.00
C3—C4—C5121.2 (3)C7—C6—H6122.00
C4—C5—C6121.9 (3)N1—C9—H9106.4 (13)
C5—C6—C7116.6 (2)C10—C9—H9106.2 (13)
C2—C7—C6121.44 (18)C11—C9—H9109.1 (12)
C2—C7—C8108.22 (16)C9—C11—H11A109.00
C6—C7—C8130.30 (18)C9—C11—H11B109.00
O2—C8—N1124.46 (16)C9—C11—H11C109.00
O2—C8—C7130.15 (16)H11A—C11—H11B109.00
N1—C8—C7105.39 (14)H11A—C11—H11C109.00
N1—C9—C11112.0 (2)H11B—C11—H11C109.00
C10—C9—C11111.83 (17)
C8—N1—C1—O1−178.37 (16)C1—C2—C7—C6176.60 (16)
C8—N1—C1—C22.54 (18)C1—C2—C7—C8−1.21 (18)
C9—N1—C1—O13.8 (3)C3—C2—C7—C6−1.4 (3)
C9—N1—C1—C2−175.31 (15)C3—C2—C7—C8−179.17 (16)
C1—N1—C8—O2177.22 (16)C2—C3—C4—C50.5 (3)
C1—N1—C8—C7−3.24 (18)C3—C4—C5—C6−0.5 (4)
C9—N1—C8—O2−4.9 (3)C4—C5—C6—C7−0.4 (3)
C9—N1—C8—C7174.62 (15)C5—C6—C7—C21.3 (3)
C1—N1—C9—C1057.8 (2)C5—C6—C7—C8178.61 (18)
C1—N1—C9—C11−67.9 (2)C2—C7—C8—O2−177.83 (18)
C8—N1—C9—C10−119.78 (18)C2—C7—C8—N12.66 (17)
C8—N1—C9—C11114.5 (2)C6—C7—C8—O24.6 (3)
O1—C1—C2—C3−2.0 (3)C6—C7—C8—N1−174.88 (18)
O1—C1—C2—C7−179.76 (18)N1—C9—C10—O320.4 (3)
N1—C1—C2—C3177.02 (18)N1—C9—C10—O4−161.9 (3)
N1—C1—C2—C7−0.73 (18)C11—C9—C10—O3146.2 (2)
C1—C2—C3—C4−177.09 (18)C11—C9—C10—O4−36.0 (4)
C7—C2—C3—C40.4 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O1v0.80 (4)1.96 (4)2.750 (2)172 (4)
C9—H9···O20.96 (3)2.48 (2)2.899 (2)106.6 (17)
C8—O2···Cg1iii1.200 (2)3.0874 (16)4.0543 (17)138.28 (12)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O1i0.80 (4)1.96 (4)2.750 (2)172 (4)
C9—H9⋯O20.96 (3)2.48 (2)2.899 (2)106.6 (17)
C8—O2⋯Cg1ii1.20 (1)3.09 (1)4.0543 (17)138 (1)

Symmetry codes: (i) ; (ii) . Cg1 is the centroid of 5-membered heterocyclic ring.

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure-requirements of isocoumarins, phthalides, and stilbenes from Hydrangeae Dulcis Folium for inhibitory activity on histamine release from rat peritoneal mast cells.

Authors:  H Matsuda; H Shimoda; M Yoshikawa
Journal:  Bioorg Med Chem       Date:  1999-07       Impact factor: 3.641

3.  (2R)-2-(1,3-Dioxoisoindolin-2-yl)-4-(methyl-sulfan-yl)butanoic acid.

Authors:  Abdul Rauf Raza; M Nawaz Tahir; Aisha Saddiqa; Muhammad Danish; M Saeed Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-25

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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