| Literature DB >> 21578278 |
Michael T Kirchner, Dieter Bläser, Roland Boese, Tejender S Thakur, Gautam R Desiraju.
Abstract
The weak electrostatic and dispersive forces between C(δ+)-F(δ-) and H(δ+)-C(δ-) are at the borderline of the hydrogen-bond phenomenon and are poorly directional and further deformed in the presence of other dominant inter-actions, e.g. C-H⋯π. The title compound, C(6)H(4)F(2), Z' = 2, forms one-dimensional tapes along two homodromic C-H⋯F hydrogen bonds. The one-dimensional tapes are connected into corrugated two-dimensional sheets by further bi- or trifrucated C-H⋯F hydrogen bonds. Packing in the third dimension is controlled by C-H⋯π inter-actions.Entities:
Year: 2009 PMID: 21578278 PMCID: PMC2971077 DOI: 10.1107/S1600536809038987
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H4F2 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2977 reflections |
| θ = 2.9–28.2° | |
| µ = 0.13 mm−1 | |
| β = 106.842 (3)° | Cylindric, colourless |
| 0.30 × 0.30 × 0.30 mm | |
| Bruker SMART APEXII area-detector diffractometer | 2099 independent reflections |
| Radiation source: fine-focus sealed tube | 1578 reflections with |
| graphite | |
| Detector resolution: 512 pixels mm-1 | θmax = 28.3°, θmin = 1.9° |
| Data collection strategy APEX 2/COSMO with chi +/– 10° scans | |
| Absorption correction: multi-scan ( | |
| 7831 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters not refined | |
| (Δ/σ)max = 0.001 | |
| 2099 reflections | Δρmax = 0.19 e Å−3 |
| 146 parameters | Δρmin = −0.13 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0034 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.20034 (3) | 0.21738 (6) | 0.63089 (12) | 0.0520 (3) | |
| F2 | 0.01617 (3) | 0.35397 (7) | 0.49907 (14) | 0.0587 (3) | |
| C1 | 0.16251 (5) | 0.29864 (9) | 0.56491 (16) | 0.0349 (3) | |
| C2 | 0.10797 (6) | 0.28273 (9) | 0.56876 (17) | 0.0372 (3) | |
| H2 | 0.0966 | 0.2170 | 0.6188 | 0.045* | |
| C3 | 0.07043 (6) | 0.36645 (10) | 0.49742 (18) | 0.0370 (3) | |
| C4 | 0.08585 (6) | 0.46202 (9) | 0.42616 (17) | 0.0378 (3) | |
| H4 | 0.0586 | 0.5187 | 0.3775 | 0.045* | |
| C5 | 0.14156 (6) | 0.47408 (9) | 0.42727 (16) | 0.0370 (3) | |
| H5 | 0.1531 | 0.5394 | 0.3793 | 0.044* | |
| C6 | 0.18102 (6) | 0.39238 (9) | 0.49720 (17) | 0.0355 (3) | |
| H6 | 0.2199 | 0.4008 | 0.4989 | 0.043* | |
| F11 | 0.23615 (3) | 0.09707 (6) | 0.01979 (13) | 0.0571 (3) | |
| F12 | 0.05258 (4) | −0.03682 (6) | −0.08892 (13) | 0.0625 (3) | |
| C11 | 0.18189 (6) | 0.11273 (10) | 0.01807 (17) | 0.0365 (3) | |
| C12 | 0.14440 (6) | 0.02770 (9) | −0.03976 (17) | 0.0382 (3) | |
| H12 | 0.1558 | −0.0409 | −0.0800 | 0.046* | |
| C13 | 0.08994 (6) | 0.04613 (9) | −0.03803 (18) | 0.0385 (3) | |
| C14 | 0.07131 (6) | 0.14411 (9) | 0.01511 (18) | 0.0380 (3) | |
| H14 | 0.0325 | 0.1545 | 0.0122 | 0.046* | |
| C15 | 0.11075 (6) | 0.22716 (9) | 0.07194 (17) | 0.0383 (3) | |
| H15 | 0.0992 | 0.2961 | 0.1105 | 0.046* | |
| C16 | 0.16634 (6) | 0.21260 (9) | 0.07456 (18) | 0.0392 (3) | |
| H16 | 0.1934 | 0.2705 | 0.1133 | 0.047* |
| F1 | 0.0441 (6) | 0.0416 (4) | 0.0679 (5) | 0.0105 (3) | 0.0124 (4) | 0.0059 (3) |
| F2 | 0.0295 (6) | 0.0668 (5) | 0.0841 (6) | −0.0076 (4) | 0.0234 (5) | −0.0023 (4) |
| C1 | 0.0343 (9) | 0.0338 (5) | 0.0352 (6) | 0.0013 (5) | 0.0078 (6) | −0.0017 (4) |
| C2 | 0.0397 (9) | 0.0341 (6) | 0.0401 (6) | −0.0071 (5) | 0.0153 (6) | −0.0012 (4) |
| C3 | 0.0257 (9) | 0.0455 (6) | 0.0411 (6) | −0.0062 (5) | 0.0118 (6) | −0.0064 (5) |
| C4 | 0.0346 (9) | 0.0382 (6) | 0.0379 (6) | 0.0027 (5) | 0.0064 (6) | 0.0002 (5) |
| C5 | 0.0405 (9) | 0.0351 (6) | 0.0362 (6) | −0.0046 (5) | 0.0123 (6) | 0.0017 (4) |
| C6 | 0.0267 (9) | 0.0421 (6) | 0.0395 (6) | −0.0053 (5) | 0.0122 (6) | −0.0038 (5) |
| F11 | 0.0289 (6) | 0.0654 (5) | 0.0794 (6) | 0.0116 (4) | 0.0195 (5) | 0.0076 (4) |
| F12 | 0.0502 (6) | 0.0499 (5) | 0.0894 (6) | −0.0173 (4) | 0.0235 (5) | −0.0145 (4) |
| C11 | 0.0242 (9) | 0.0468 (6) | 0.0392 (6) | 0.0077 (5) | 0.0100 (6) | 0.0073 (5) |
| C12 | 0.0425 (9) | 0.0346 (6) | 0.0402 (6) | 0.0064 (5) | 0.0161 (6) | 0.0016 (5) |
| C13 | 0.0370 (9) | 0.0375 (6) | 0.0416 (6) | −0.0045 (5) | 0.0122 (6) | −0.0014 (5) |
| C14 | 0.0283 (9) | 0.0452 (6) | 0.0433 (7) | 0.0049 (5) | 0.0149 (6) | 0.0019 (5) |
| C15 | 0.0403 (9) | 0.0357 (6) | 0.0409 (6) | 0.0049 (5) | 0.0150 (6) | −0.0018 (4) |
| C16 | 0.0355 (9) | 0.0381 (6) | 0.0423 (7) | −0.0041 (5) | 0.0086 (6) | −0.0017 (5) |
| F1—C1 | 1.3553 (13) | F11—C11 | 1.3486 (14) |
| F2—C3 | 1.3506 (15) | F12—C13 | 1.3515 (14) |
| C1—C2 | 1.3673 (18) | C11—C12 | 1.3773 (17) |
| C1—C6 | 1.3797 (15) | C11—C16 | 1.3820 (16) |
| C2—C3 | 1.3800 (17) | C12—C13 | 1.3656 (18) |
| C2—H2 | 0.96 | C12—H12 | 0.96 |
| C3—C4 | 1.3793 (16) | C13—C14 | 1.3821 (16) |
| C4—C5 | 1.3794 (18) | C14—C15 | 1.3872 (17) |
| C4—H4 | 0.96 | C14—H14 | 0.96 |
| C5—C6 | 1.3874 (17) | C15—C16 | 1.3772 (18) |
| C5—H5 | 0.95 | C15—H15 | 0.96 |
| C6—H6 | 0.96 | C16—H16 | 0.96 |
| F1—C1—C2 | 117.92 (10) | F11—C11—C12 | 118.14 (11) |
| F1—C1—C6 | 118.36 (11) | F11—C11—C16 | 118.92 (11) |
| C2—C1—C6 | 123.71 (11) | C12—C11—C16 | 122.94 (12) |
| C1—C2—C3 | 116.30 (10) | C13—C12—C11 | 116.54 (11) |
| C1—C2—H2 | 121.7 | C13—C12—H12 | 121.6 |
| C3—C2—H2 | 122.0 | C11—C12—H12 | 121.8 |
| F2—C3—C2 | 118.12 (10) | F12—C13—C12 | 117.85 (10) |
| F2—C3—C4 | 118.76 (12) | F12—C13—C14 | 118.50 (11) |
| C2—C3—C4 | 123.12 (12) | C12—C13—C14 | 123.65 (11) |
| C3—C4—C5 | 118.11 (11) | C13—C14—C15 | 117.50 (12) |
| C3—C4—H4 | 121.0 | C13—C14—H14 | 121.3 |
| C5—C4—H4 | 120.9 | C15—C14—H14 | 121.2 |
| C4—C5—C6 | 121.10 (11) | C16—C15—C14 | 121.22 (11) |
| C4—C5—H5 | 119.5 | C16—C15—H15 | 119.3 |
| C6—C5—H5 | 119.4 | C14—C15—H15 | 119.5 |
| C1—C6—C5 | 117.64 (12) | C15—C16—C11 | 118.14 (11) |
| C1—C6—H6 | 121.2 | C15—C16—H16 | 120.8 |
| C5—C6—H6 | 121.2 | C11—C16—H16 | 121.0 |
| H··· | ||||
| C2—H2···F12i | 0.96 | 2.72 | 3.3750 (14) | 126 |
| C4—H4···F2ii | 0.96 | 2.76 | 3.5386 (16) | 139 |
| C5—H5···F11iii | 0.95 | 2.71 | 3.2948 (16) | 121 |
| C6—H6···F11iii | 0.96 | 2.66 | 3.2644 (15) | 121 |
| C6—H6···F1iv | 0.96 | 2.82 | 3.5789 (17) | 137 |
| C12—H12···F1v | 0.96 | 2.70 | 3.3919 (14) | 130 |
| C14—H14···F2vi | 0.96 | 2.72 | 3.3442 (16) | 123 |
| C14—H14···F12vii | 0.96 | 2.73 | 3.5075 (18) | 138 |
| C15—H15···F2vi | 0.96 | 2.81 | 3.3995 (17) | 120 |
| C16—H16···F11viii | 0.96 | 2.75 | 3.5591 (16) | 142 |
| C2—H2···Cg2ix | 0.96 | 2.96 | 3.6653 (13) | 131 |
| C12—H12···Cg2v | 0.96 | 2.99 | 3.6547 (13) | 127 |
| C5—H5···Cg1x | 0.95 | 2.83 | 3.5153 (12) | 130 |
| C15—H15···Cg1 | 0.96 | 2.87 | 3.5283 (13) | 127 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C2—H2⋯F12i | 0.96 | 2.72 | 3.3750 (14) | 126 |
| C4—H4⋯F2ii | 0.96 | 2.76 | 3.5386 (16) | 139 |
| C5—H5⋯F11iii | 0.95 | 2.71 | 3.2948 (16) | 121 |
| C6—H6⋯F11iii | 0.96 | 2.66 | 3.2644 (15) | 121 |
| C6—H6⋯F1iv | 0.96 | 2.82 | 3.5789 (17) | 137 |
| C12—H12⋯F1v | 0.96 | 2.70 | 3.3919 (14) | 130 |
| C14—H14⋯F2vi | 0.96 | 2.72 | 3.3442 (16) | 123 |
| C14—H14⋯F12vii | 0.96 | 2.73 | 3.5075 (18) | 138 |
| C15—H15⋯F2vi | 0.96 | 2.81 | 3.3995 (17) | 120 |
| C16—H16⋯F11viii | 0.96 | 2.75 | 3.5591 (16) | 142 |
| C2—H2⋯ | 0.96 | 2.96 | 3.6653 (13) | 131 |
| C12—H12⋯ | 0.96 | 2.99 | 3.6547 (13) | 127 |
| C5—H5⋯ | 0.95 | 2.83 | 3.5153 (12) | 130 |
| C15—H15⋯ | 0.96 | 2.87 | 3.5283 (13) | 127 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) ; (ix) ; (x) . Cg1 and Cg2 are the centroids of the C1–C6 and C11–C16 rings, respectively.