Literature DB >> 21578238

9-Benzamido-acridinium chloride.

Kun Huang1, Kun-Ying Liu, Da-Bin Qin.   

Abstract

In the title compound, C(20)H(15)N(2)O(+)·Cl(-), the dihedral angle between the fused-ring system and the benzene ring is 63.10 (7)°. In the crystal, N-H⋯Cl hydrogen bonds link the components and aromatic π-π stacking [shortest centroid-centroid distance = 3.6421 (12) Å] occurs.

Entities:  

Year:  2009        PMID: 21578238      PMCID: PMC2971138          DOI: 10.1107/S1600536809039439

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to acridine derivatives, see: Antonini (2002 ▶); Carvalho et al. (2005 ▶). For the synthesis, see: He et al. (2008 ▶); Chandregowda et al. (2009 ▶). For related structures, see: Sikorski et al. (2007 ▶, 2008 ▶); Trzybiníski et al. (2009 ▶).

Experimental

Crystal data

C20H15N2O+·Cl− M = 334.79 Triclinic, a = 8.9601 (17) Å b = 9.0084 (17) Å c = 10.8775 (18) Å α = 79.168 (7)° β = 65.855 (5)° γ = 86.927 (7)° V = 786.6 (2) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 93 K 0.37 × 0.33 × 0.17 mm

Data collection

Rigaku SPIDER diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.913, T max = 0.959 4772 measured reflections 2955 independent reflections 2538 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.069 S = 1.00 2955 reflections 225 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.22 e Å−3 Data collection: RAPID-AUTO (Rigaku/MSC, 2004 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809039439/hb5083sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039439/hb5083Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H15N2O+·ClZ = 2
Mr = 334.79F(000) = 348
Triclinic, P1Dx = 1.413 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.9601 (17) ÅCell parameters from 2420 reflections
b = 9.0084 (17) Åθ = 3.2–27.5°
c = 10.8775 (18) ŵ = 0.25 mm1
α = 79.168 (7)°T = 93 K
β = 65.855 (5)°Chunk, yellow
γ = 86.927 (7)°0.37 × 0.33 × 0.17 mm
V = 786.6 (2) Å3
Rigaku SPIDER diffractometer2955 independent reflections
Radiation source: Rotating Anode2538 reflections with I > 2σ(I)
graphiteRint = 0.020
ω scansθmax = 26.0°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→11
Tmin = 0.913, Tmax = 0.959k = −10→11
4772 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0136P)2 + 0.516P] where P = (Fo2 + 2Fc2)/3
2955 reflections(Δ/σ)max < 0.001
225 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.78153 (5)0.85506 (5)−0.03376 (4)0.01909 (12)
O10.39684 (14)0.63975 (13)0.49853 (12)0.0187 (3)
N10.34182 (17)0.35116 (16)0.16256 (14)0.0143 (3)
N20.54610 (18)0.68607 (16)0.26770 (15)0.0153 (3)
C10.5768 (2)0.46569 (18)0.16353 (17)0.0139 (4)
C20.7475 (2)0.45912 (19)0.13000 (17)0.0161 (4)
H20.79880.53170.15410.019*
C30.8384 (2)0.34982 (19)0.06364 (18)0.0178 (4)
H30.95240.34690.04220.021*
C40.7652 (2)0.2403 (2)0.02605 (18)0.0185 (4)
H40.83060.1652−0.02050.022*
C50.6021 (2)0.24183 (19)0.05601 (17)0.0165 (4)
H50.55380.16870.03010.020*
C60.5053 (2)0.35355 (18)0.12623 (17)0.0142 (4)
C70.2393 (2)0.44990 (18)0.23448 (17)0.0140 (4)
C80.0696 (2)0.4369 (2)0.27045 (18)0.0176 (4)
H80.02680.35670.24780.021*
C9−0.0322 (2)0.5401 (2)0.33778 (18)0.0194 (4)
H9−0.14680.52970.36490.023*
C100.0313 (2)0.6631 (2)0.36779 (18)0.0197 (4)
H10−0.04060.73720.41060.024*
C110.1935 (2)0.67615 (19)0.33612 (18)0.0172 (4)
H110.23380.75920.35710.021*
C120.3043 (2)0.56678 (18)0.27180 (17)0.0141 (4)
C130.4735 (2)0.57227 (18)0.23643 (17)0.0139 (4)
C140.5083 (2)0.70877 (18)0.39917 (18)0.0145 (4)
C150.6172 (2)0.82148 (18)0.41153 (17)0.0139 (4)
C160.7367 (2)0.91166 (19)0.30042 (18)0.0175 (4)
H160.75280.90470.20980.021*
C170.8326 (2)1.01193 (19)0.32150 (19)0.0198 (4)
H170.91401.07350.24530.024*
C180.8099 (2)1.02228 (19)0.45330 (19)0.0187 (4)
H180.87651.09020.46740.022*
C190.6903 (2)0.93372 (19)0.56455 (19)0.0190 (4)
H190.67460.94120.65500.023*
C200.5936 (2)0.83416 (19)0.54403 (18)0.0165 (4)
H200.51090.77430.62060.020*
H1N0.298 (2)0.278 (2)0.1340 (19)0.023 (5)*
H2N0.633 (2)0.736 (2)0.197 (2)0.024 (5)*
U11U22U33U12U13U23
Cl10.0200 (2)0.0198 (2)0.0173 (2)−0.00404 (17)−0.00573 (19)−0.00612 (18)
O10.0190 (7)0.0196 (6)0.0160 (7)−0.0045 (5)−0.0056 (6)−0.0020 (5)
N10.0175 (8)0.0134 (7)0.0137 (8)−0.0022 (6)−0.0077 (6)−0.0023 (6)
N20.0160 (8)0.0165 (8)0.0128 (8)−0.0038 (6)−0.0040 (7)−0.0045 (6)
C10.0177 (9)0.0131 (8)0.0103 (9)−0.0006 (7)−0.0060 (7)−0.0001 (7)
C20.0183 (9)0.0165 (9)0.0147 (9)−0.0034 (7)−0.0083 (8)−0.0011 (7)
C30.0164 (10)0.0183 (9)0.0166 (10)0.0015 (7)−0.0058 (8)−0.0008 (8)
C40.0230 (10)0.0168 (9)0.0139 (9)0.0029 (7)−0.0062 (8)−0.0027 (7)
C50.0228 (10)0.0141 (9)0.0143 (9)−0.0002 (7)−0.0090 (8)−0.0029 (7)
C60.0175 (10)0.0143 (8)0.0102 (9)−0.0022 (7)−0.0061 (7)0.0010 (7)
C70.0175 (9)0.0139 (8)0.0104 (9)−0.0008 (7)−0.0061 (7)−0.0004 (7)
C80.0194 (10)0.0198 (9)0.0155 (9)−0.0030 (7)−0.0094 (8)−0.0018 (8)
C90.0144 (9)0.0277 (10)0.0166 (9)−0.0007 (8)−0.0074 (8)−0.0028 (8)
C100.0203 (10)0.0234 (10)0.0159 (10)0.0054 (8)−0.0077 (8)−0.0055 (8)
C110.0215 (10)0.0169 (9)0.0156 (9)0.0009 (7)−0.0096 (8)−0.0039 (8)
C120.0170 (9)0.0143 (8)0.0109 (9)−0.0013 (7)−0.0060 (7)−0.0007 (7)
C130.0188 (10)0.0126 (8)0.0101 (8)−0.0030 (7)−0.0064 (7)0.0004 (7)
C140.0159 (9)0.0130 (8)0.0166 (9)0.0033 (7)−0.0085 (8)−0.0040 (7)
C150.0148 (9)0.0121 (8)0.0169 (9)0.0024 (7)−0.0078 (8)−0.0045 (7)
C160.0202 (10)0.0186 (9)0.0150 (9)−0.0005 (7)−0.0070 (8)−0.0058 (8)
C170.0201 (10)0.0181 (9)0.0187 (10)−0.0039 (8)−0.0044 (8)−0.0042 (8)
C180.0200 (10)0.0164 (9)0.0238 (10)0.0003 (7)−0.0118 (8)−0.0064 (8)
C190.0261 (10)0.0183 (9)0.0171 (10)0.0026 (8)−0.0123 (8)−0.0063 (8)
C200.0205 (10)0.0141 (8)0.0150 (9)−0.0002 (7)−0.0077 (8)−0.0015 (7)
O1—C141.218 (2)C8—H80.9500
N1—C61.352 (2)C9—C101.419 (2)
N1—C71.354 (2)C9—H90.9500
N1—H1N0.939 (19)C10—C111.356 (2)
N2—C141.381 (2)C10—H100.9500
N2—C131.405 (2)C11—C121.425 (2)
N2—H2N0.902 (19)C11—H110.9500
C1—C131.414 (2)C12—C131.404 (2)
C1—C21.421 (2)C14—C151.505 (2)
C1—C61.425 (2)C15—C161.390 (2)
C2—C31.362 (2)C15—C201.395 (2)
C2—H20.9500C16—C171.389 (2)
C3—C41.418 (2)C16—H160.9500
C3—H30.9500C17—C181.384 (2)
C4—C51.360 (2)C17—H170.9500
C4—H40.9500C18—C191.385 (2)
C5—C61.415 (2)C18—H180.9500
C5—H50.9500C19—C201.387 (2)
C7—C81.412 (2)C19—H190.9500
C7—C121.426 (2)C20—H200.9500
C8—C91.361 (2)
C6—N1—C7123.57 (14)C11—C10—C9120.77 (16)
C6—N1—H1N117.6 (11)C11—C10—H10119.6
C7—N1—H1N118.8 (11)C9—C10—H10119.6
C14—N2—C13124.05 (15)C10—C11—C12120.82 (16)
C14—N2—H2N120.0 (12)C10—C11—H11119.6
C13—N2—H2N115.3 (12)C12—C11—H11119.6
C13—C1—C2123.94 (15)C13—C12—C11124.12 (15)
C13—C1—C6118.42 (15)C13—C12—C7118.46 (15)
C2—C1—C6117.58 (15)C11—C12—C7117.32 (15)
C3—C2—C1120.64 (16)C12—C13—N2121.44 (15)
C3—C2—H2119.7C12—C13—C1120.60 (15)
C1—C2—H2119.7N2—C13—C1117.93 (15)
C2—C3—C4120.88 (17)O1—C14—N2122.22 (15)
C2—C3—H3119.6O1—C14—C15122.34 (15)
C4—C3—H3119.6N2—C14—C15115.42 (15)
C5—C4—C3120.67 (16)C16—C15—C20119.27 (15)
C5—C4—H4119.7C16—C15—C14124.14 (15)
C3—C4—H4119.7C20—C15—C14116.59 (15)
C4—C5—C6119.29 (16)C17—C16—C15120.21 (16)
C4—C5—H5120.4C17—C16—H16119.9
C6—C5—H5120.4C15—C16—H16119.9
N1—C6—C5119.64 (15)C18—C17—C16120.14 (17)
N1—C6—C1119.40 (15)C18—C17—H17119.9
C5—C6—C1120.93 (16)C16—C17—H17119.9
N1—C7—C8119.67 (15)C17—C18—C19120.02 (16)
N1—C7—C12119.52 (15)C17—C18—H18120.0
C8—C7—C12120.81 (15)C19—C18—H18120.0
C9—C8—C7119.44 (16)C18—C19—C20120.04 (16)
C9—C8—H8120.3C18—C19—H19120.0
C7—C8—H8120.3C20—C19—H19120.0
C8—C9—C10120.61 (17)C19—C20—C15120.31 (16)
C8—C9—H9119.7C19—C20—H20119.8
C10—C9—H9119.7C15—C20—H20119.8
C13—C1—C2—C3177.69 (17)C8—C7—C12—C11−5.1 (2)
C6—C1—C2—C30.5 (3)C11—C12—C13—N22.5 (3)
C1—C2—C3—C40.2 (3)C7—C12—C13—N2178.76 (16)
C2—C3—C4—C5−0.2 (3)C11—C12—C13—C1−175.20 (17)
C3—C4—C5—C6−0.4 (3)C7—C12—C13—C11.0 (2)
C7—N1—C6—C5177.34 (16)C14—N2—C13—C1261.0 (2)
C7—N1—C6—C1−0.5 (2)C14—N2—C13—C1−121.22 (18)
C4—C5—C6—N1−176.64 (16)C2—C1—C13—C12−176.74 (16)
C4—C5—C6—C11.2 (3)C6—C1—C13—C120.4 (2)
C13—C1—C6—N1−0.7 (2)C2—C1—C13—N25.4 (3)
C2—C1—C6—N1176.61 (16)C6—C1—C13—N2−177.42 (15)
C13—C1—C6—C5−178.53 (16)C13—N2—C14—O1−7.0 (3)
C2—C1—C6—C5−1.2 (2)C13—N2—C14—C15171.42 (15)
C6—N1—C7—C8−178.65 (16)O1—C14—C15—C16−174.41 (17)
C6—N1—C7—C122.0 (3)N2—C14—C15—C167.1 (2)
N1—C7—C8—C9−177.30 (17)O1—C14—C15—C205.4 (2)
C12—C7—C8—C92.1 (3)N2—C14—C15—C20−173.03 (15)
C7—C8—C9—C102.2 (3)C20—C15—C16—C170.7 (3)
C8—C9—C10—C11−3.3 (3)C14—C15—C16—C17−179.45 (16)
C9—C10—C11—C120.1 (3)C15—C16—C17—C180.2 (3)
C10—C11—C12—C13−179.75 (17)C16—C17—C18—C19−0.7 (3)
C10—C11—C12—C74.0 (3)C17—C18—C19—C200.2 (3)
N1—C7—C12—C13−2.2 (2)C18—C19—C20—C150.6 (3)
C8—C7—C12—C13178.44 (16)C16—C15—C20—C19−1.1 (3)
N1—C7—C12—C11174.28 (15)C14—C15—C20—C19179.04 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1N···Cl1i0.93 (2)2.09 (2)3.0167 (17)168 (8)
N2—H2N···Cl10.90 (2)2.37 (2)3.2139 (17)154 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯Cl1i0.93 (2)2.09 (2)3.0167 (17)168 (8)
N2—H2N⋯Cl10.90 (2)2.37 (2)3.2139 (17)154 (4)

Symmetry code: (i) .

  6 in total

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2.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of benzamide derivatives of anacardic acid and their cytotoxic activity.

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4.  DNA threading bis(9-aminoacridine-4-carboxamides): effects of piperidine sidechains on DNA binding, cytotoxicity and cell cycle arrest.

Authors:  Zhicong He; Xianyong Bu; Alexandra Eleftheriou; Malik Zihlif; Zhang Qing; Bernard W Stewart; Laurence P G Wakelin
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5.  9-(Biphenyl-4-yl-oxycarbon-yl)-10-methyl-acridinium trifluoro-methane-sulfonate.

Authors:  Damian Trzybiński; Magdalena Skupień; Karol Krzymiński; Artur Sikorski; Jerzy Błażejowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-14

6.  10-Methyl-9-(2-nitro-phenoxy-carbon-yl)acridinium trifluoro-methane-sulfonate.

Authors:  Artur Sikorski; Agnieszka Niziołek; Karol Krzymiński; Tadeusz Lis; Jerzy Błażejowski
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  6 in total

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