Literature DB >> 21578237

10-Ethynyl-2,3,6,6a,9,10-hexa-hydro-1H-6,9-methano-pyrrolo[2,1-i][2,1]benzo-thia-zol-10-ol 5,5-dioxide.

B O Patrick1, H Liang, S Canesi, M A Ciufolini.   

Abstract

In the title compound, C(13)H(15)NO(3)S, the sole classical hydrogen-bond donor is involved in an intra-molecular O-H⋯N hydrogen bond. In the crystal structure, pairs of mol-ecules related by inversion centres are linked by pairs of weak inter-molecular C-H⋯O inter-actions; these centrosymmetric pairs are, in turn, linked further by weak inter-molecular C-H⋯O inter-actions, forming two-dimensional sheets oriented parallel to (101).

Entities:  

Year:  2009        PMID: 21578237      PMCID: PMC2971063          DOI: 10.1107/S1600536809038410

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to our ongoing research on the synthesis of himandrine and related alkaloids, see: Ciufolini et al. (2007 ▶); Liang & Ciufolini (2008 ▶).

Experimental

Crystal data

C13H15NO3S M = 265.32 Monoclinic, a = 24.113 (3) Å b = 6.6202 (7) Å c = 15.111 (2) Å β = 92.625 (5)° V = 2409.6 (5) Å3 Z = 8 Mo Kα radiation μ = 0.27 mm−1 T = 173 K 0.35 × 0.27 × 0.18 mm

Data collection

Bruker X8 APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.877, T max = 0.963 13946 measured reflections 2889 independent reflections 2523 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.095 S = 1.03 2889 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809038410/lh2908sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809038410/lh2908Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15NO3SF(000) = 1120
Mr = 265.32Dx = 1.463 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6461 reflections
a = 24.113 (3) Åθ = 2.7–28.1°
b = 6.6202 (7) ŵ = 0.27 mm1
c = 15.111 (2) ÅT = 173 K
β = 92.625 (5)°Prism, colourless
V = 2409.6 (5) Å30.35 × 0.27 × 0.18 mm
Z = 8
Bruker X8 APEXII diffractometer2889 independent reflections
Radiation source: fine-focus sealed tube2523 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 28.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −31→30
Tmin = 0.877, Tmax = 0.963k = −7→8
13946 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0543P)2 + 1.8974P] where P = (Fo2 + 2Fc2)/3
2889 reflections(Δ/σ)max = 0.001
167 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.08386 (6)0.8014 (2)0.24477 (10)0.0260 (3)
H10.08040.80170.18190.031*
C20.10447 (6)0.6218 (2)0.29734 (9)0.0227 (3)
H20.11370.50770.25730.027*
C30.15678 (6)0.69210 (19)0.35283 (9)0.0167 (3)
C40.07087 (6)0.9590 (2)0.29339 (10)0.0241 (3)
H40.05801.08260.26810.029*
C50.13832 (5)0.86156 (19)0.41981 (8)0.0143 (2)
C60.07809 (5)0.9277 (2)0.39197 (9)0.0179 (3)
H60.06691.05070.42520.021*
C70.05869 (6)0.5588 (2)0.36090 (10)0.0246 (3)
H7A0.02510.51440.32610.030*
H7B0.07200.44460.39850.030*
C80.04457 (6)0.7400 (2)0.41948 (9)0.0192 (3)
H80.00380.76820.41630.023*
C100.17913 (6)1.0368 (2)0.43416 (9)0.0197 (3)
H10A0.21770.99260.42520.024*
H10B0.16981.14970.39310.024*
C110.17199 (6)1.0997 (2)0.53035 (10)0.0258 (3)
H11A0.20461.17610.55430.031*
H11B0.13821.18270.53610.031*
C120.16678 (6)0.8971 (2)0.57668 (9)0.0238 (3)
H12A0.20380.83890.59190.029*
H12B0.14620.91120.63150.029*
C170.19816 (6)0.7687 (2)0.29199 (9)0.0187 (3)
C180.23235 (6)0.8204 (2)0.24254 (10)0.0237 (3)
H180.25970.86180.20300.028*
N130.13541 (5)0.76842 (17)0.51039 (7)0.0166 (2)
O90.18201 (4)0.52655 (15)0.39984 (7)0.0242 (2)
O150.04568 (4)0.85899 (19)0.58703 (7)0.0300 (3)
O160.06809 (5)0.50367 (17)0.56167 (8)0.0316 (3)
S140.069910 (13)0.70937 (5)0.53140 (2)0.01917 (11)
H9O0.1739 (10)0.542 (3)0.4521 (16)0.049 (6)*
U11U22U33U12U13U23
C10.0192 (7)0.0402 (9)0.0183 (7)−0.0073 (6)−0.0010 (5)0.0025 (6)
C20.0242 (7)0.0233 (7)0.0210 (7)−0.0070 (6)0.0053 (5)−0.0054 (5)
C30.0182 (6)0.0136 (6)0.0187 (6)0.0007 (5)0.0044 (5)0.0015 (5)
C40.0178 (6)0.0313 (8)0.0228 (7)0.0008 (6)−0.0017 (5)0.0094 (6)
C50.0148 (6)0.0128 (6)0.0156 (6)0.0005 (5)0.0023 (4)0.0017 (5)
C60.0152 (6)0.0180 (6)0.0205 (6)0.0021 (5)0.0012 (5)0.0031 (5)
C70.0235 (7)0.0255 (7)0.0252 (7)−0.0096 (6)0.0052 (6)−0.0040 (6)
C80.0149 (6)0.0239 (7)0.0188 (6)−0.0023 (5)0.0015 (5)0.0018 (5)
C100.0200 (6)0.0163 (6)0.0228 (7)−0.0038 (5)0.0026 (5)−0.0006 (5)
C110.0277 (7)0.0236 (7)0.0261 (7)−0.0062 (6)0.0012 (6)−0.0059 (6)
C120.0223 (7)0.0293 (8)0.0194 (7)−0.0024 (6)−0.0020 (5)−0.0013 (6)
C170.0187 (6)0.0164 (6)0.0209 (6)0.0019 (5)0.0022 (5)−0.0003 (5)
C180.0231 (7)0.0232 (7)0.0252 (7)−0.0003 (5)0.0067 (6)0.0016 (6)
N130.0147 (5)0.0194 (6)0.0160 (5)−0.0001 (4)0.0027 (4)0.0027 (4)
O90.0301 (5)0.0163 (5)0.0271 (6)0.0078 (4)0.0097 (4)0.0062 (4)
O150.0232 (5)0.0426 (7)0.0248 (5)0.0037 (5)0.0081 (4)−0.0073 (5)
O160.0286 (6)0.0307 (6)0.0357 (6)−0.0060 (5)0.0048 (5)0.0151 (5)
S140.01614 (17)0.0232 (2)0.01853 (18)−0.00074 (12)0.00492 (12)0.00346 (12)
C1—C41.322 (2)C7—H7B0.9900
C1—C21.501 (2)C8—S141.7832 (14)
C1—H10.9500C8—H81.0000
C2—C71.5532 (19)C10—C111.529 (2)
C2—C31.5536 (19)C10—H10A0.9900
C2—H21.0000C10—H10B0.9900
C3—O91.4269 (16)C11—C121.521 (2)
C3—C171.4770 (18)C11—H11A0.9900
C3—C51.5882 (17)C11—H11B0.9900
C4—C61.5062 (19)C12—N131.4938 (18)
C4—H40.9500C12—H12A0.9900
C5—N131.5057 (16)C12—H12B0.9900
C5—C101.5304 (18)C17—C181.188 (2)
C5—C61.5563 (17)C18—H180.9500
C6—C81.5497 (18)N13—S141.6716 (11)
C6—H61.0000O9—H9O0.83 (2)
C7—C81.538 (2)O15—S141.4402 (11)
C7—H7A0.9900O16—S141.4378 (11)
C4—C1—C2114.33 (13)C7—C8—C6109.82 (11)
C4—C1—H1122.8C7—C8—S14112.45 (10)
C2—C1—H1122.8C6—C8—S14100.68 (9)
C1—C2—C7108.20 (12)C7—C8—H8111.2
C1—C2—C3106.82 (11)C6—C8—H8111.2
C7—C2—C3109.22 (11)S14—C8—H8111.2
C1—C2—H2110.8C11—C10—C5103.97 (11)
C7—C2—H2110.8C11—C10—H10A111.0
C3—C2—H2110.8C5—C10—H10A111.0
O9—C3—C17106.79 (11)C11—C10—H10B111.0
O9—C3—C2110.84 (11)C5—C10—H10B111.0
C17—C3—C2108.77 (11)H10A—C10—H10B109.0
O9—C3—C5110.54 (10)C12—C11—C10102.28 (11)
C17—C3—C5111.79 (10)C12—C11—H11A111.3
C2—C3—C5108.13 (10)C10—C11—H11A111.3
C1—C4—C6114.92 (13)C12—C11—H11B111.3
C1—C4—H4122.5C10—C11—H11B111.3
C6—C4—H4122.5H11A—C11—H11B109.2
N13—C5—C10103.78 (10)N13—C12—C11104.12 (11)
N13—C5—C6106.21 (10)N13—C12—H12A110.9
C10—C5—C6114.26 (11)C11—C12—H12A110.9
N13—C5—C3108.43 (10)N13—C12—H12B110.9
C10—C5—C3115.39 (10)C11—C12—H12B110.9
C6—C5—C3108.17 (10)H12A—C12—H12B109.0
C4—C6—C8109.72 (12)C18—C17—C3176.65 (15)
C4—C6—C5111.73 (11)C17—C18—H18180.0
C8—C6—C5101.16 (10)C12—N13—C5109.44 (10)
C4—C6—H6111.3C12—N13—S14117.37 (9)
C8—C6—H6111.3C5—N13—S14110.62 (8)
C5—C6—H6111.3C3—O9—H9O105.3 (16)
C8—C7—C2109.18 (11)O16—S14—O15116.53 (7)
C8—C7—H7A109.8O16—S14—N13108.95 (6)
C2—C7—H7A109.8O15—S14—N13111.24 (6)
C8—C7—H7B109.8O16—S14—C8113.28 (7)
C2—C7—H7B109.8O15—S14—C8110.17 (7)
H7A—C7—H7B108.3N13—S14—C894.53 (6)
C4—C1—C2—C758.42 (16)C5—C6—C8—C7−67.18 (13)
C4—C1—C2—C3−59.07 (15)C4—C6—C8—S14169.71 (9)
C1—C2—C3—O9−175.33 (11)C5—C6—C8—S1451.57 (10)
C7—C2—C3—O967.86 (14)N13—C5—C10—C11−29.30 (13)
C1—C2—C3—C17−58.21 (14)C6—C5—C10—C1185.90 (13)
C7—C2—C3—C17−175.02 (12)C3—C5—C10—C11−147.76 (11)
C1—C2—C3—C563.37 (13)C5—C10—C11—C1240.51 (14)
C7—C2—C3—C5−53.44 (14)C10—C11—C12—N13−35.77 (14)
C2—C1—C4—C6−1.13 (18)O9—C3—C17—C1835 (3)
O9—C3—C5—N13−18.73 (14)C2—C3—C17—C18−85 (3)
C17—C3—C5—N13−137.54 (11)C5—C3—C17—C18156 (3)
C2—C3—C5—N13102.76 (11)C11—C12—N13—C518.13 (14)
O9—C3—C5—C1097.12 (13)C11—C12—N13—S14−108.98 (11)
C17—C3—C5—C10−21.69 (16)C10—C5—N13—C126.98 (13)
C2—C3—C5—C10−141.39 (11)C6—C5—N13—C12−113.80 (12)
O9—C3—C5—C6−133.51 (11)C3—C5—N13—C12130.14 (11)
C17—C3—C5—C6107.68 (12)C10—C5—N13—S14137.81 (9)
C2—C3—C5—C6−12.02 (13)C6—C5—N13—S1417.02 (12)
C1—C4—C6—C8−55.26 (16)C3—C5—N13—S14−99.03 (10)
C1—C4—C6—C556.10 (17)C12—N13—S14—O16−103.72 (11)
N13—C5—C6—C4−161.09 (11)C5—N13—S14—O16129.74 (9)
C10—C5—C6—C485.14 (14)C12—N13—S14—O1526.08 (12)
C3—C5—C6—C4−44.87 (14)C5—N13—S14—O15−100.46 (9)
N13—C5—C6—C8−44.42 (12)C12—N13—S14—C8139.77 (10)
C10—C5—C6—C8−158.19 (11)C5—N13—S14—C813.23 (10)
C3—C5—C6—C871.81 (12)C7—C8—S14—O16−34.96 (11)
C1—C2—C7—C8−56.73 (15)C6—C8—S14—O16−151.79 (9)
C3—C2—C7—C859.20 (15)C7—C8—S14—O15−167.50 (9)
C2—C7—C8—C63.27 (16)C6—C8—S14—O1575.67 (10)
C2—C7—C8—S14−107.96 (12)C7—C8—S14—N1377.91 (10)
C4—C6—C8—C750.96 (15)C6—C8—S14—N13−38.92 (9)
D—H···AD—HH···AD···AD—H···A
O9—H9O···N130.83 (2)1.99 (2)2.606 (1)131 (2)
C8—H8···O16i1.002.533.183 (2)123
C18—H18···O9ii0.952.403.341 (2)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O9—H9O⋯N130.83 (2)1.99 (2)2.606 (1)131 (2)
C8—H8⋯O16i1.002.533.183 (2)123
C18—H18⋯O9ii0.952.403.341 (2)169

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Improved procedure for the bimolecular oxidative amidation of phenols.

Authors:  Huan Liang; Marco A Ciufolini
Journal:  J Org Chem       Date:  2008-05-01       Impact factor: 4.354

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.