Literature DB >> 21578175

catena-Poly[[bis-(O,O'-diisopropyl dithio-phosphato-κS,S')nickel(II)]-μ-bis-(4-pyridylmethyl-ene)diazane-κN:N'].

Erick Berdugo, Edward R T Tiekink.   

Abstract

The Ni atom in the title linear supra-molecular polymer, [Ni(C(6)H(14)O(2)PS(2))(2)(C(12)H(10)N(4))](n), exists within a trans-N(2)S(4) octa-hedral donor set defined by two symmetrically coordinating dithio-phosphate ligands and pyridine N atoms derived from two bridging bis-(4-pyridylmethyl-ene)diazane ligands. The Ni atom lies on a centre of inversion and the bis-(4-pyridylmethyl-ene)diazane ligand is also disposed about a centre of inversion. The chains are arranged into layers sustained by C-H⋯S contacts and inter-digitate with neighbouring layers, forming the crystal structure.

Entities:  

Year:  2009        PMID: 21578175      PMCID: PMC2971175          DOI: 10.1107/S1600536809043505

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to supra­molecular polymers of metal dithio­phosphates, see: Lai & Tiekink (2004 ▶); Chen et al. (2006 ▶); Aragoni et al. (2007 ▶). For a related iso-butyl structure and the synthesis, see: Berdugo & Tiekink (2008 ▶).

Experimental

Crystal data

[Ni(C6H14O2PS2)2(C12H10N4)] M = 695.47 Triclinic, a = 8.661 (2) Å b = 8.753 (2) Å c = 11.159 (3) Å α = 88.110 (8)° β = 81.502 (7)° γ = 89.813 (10)° V = 836.2 (4) Å3 Z = 1 Mo Kα radiation μ = 0.96 mm−1 T = 98 K 0.50 × 0.08 × 0.05 mm

Data collection

Rigaku AFC12K/SATURN724 diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.794, T max = 1 7552 measured reflections 3810 independent reflections 3555 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.111 S = 1.09 3810 reflections 178 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.70 e Å−3 Data collection: CrystalClear (Rigaku/MSC 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809043505/hb5163sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809043505/hb5163Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C6H14O2PS2)2(C12H10N4)]Z = 1
Mr = 695.47F(000) = 364
Triclinic, P1Dx = 1.381 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71070 Å
a = 8.661 (2) ÅCell parameters from 2817 reflections
b = 8.753 (2) Åθ = 3.0–32.3°
c = 11.159 (3) ŵ = 0.96 mm1
α = 88.110 (8)°T = 98 K
β = 81.502 (7)°Prism, brown-orange
γ = 89.813 (10)°0.50 × 0.08 × 0.05 mm
V = 836.2 (4) Å3
Rigaku AFC12K/SATURN724 diffractometer3810 independent reflections
Radiation source: fine-focus sealed tube3555 reflections with I > 2σ(I)
graphiteRint = 0.036
ω scansθmax = 27.5°, θmin = 2.8°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −9→11
Tmin = 0.794, Tmax = 1k = −11→11
7552 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0532P)2 + 0.6278P] where P = (Fo2 + 2Fc2)/3
3810 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.70 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni0.50000.50000.50000.01506 (12)
S10.73976 (6)0.43573 (6)0.58844 (5)0.01900 (14)
S20.46123 (7)0.68201 (6)0.66788 (5)0.01887 (14)
P10.64607 (7)0.57524 (7)0.71650 (5)0.01822 (15)
O10.5953 (2)0.48949 (19)0.84272 (15)0.0223 (4)
O20.7711 (2)0.6930 (2)0.75100 (15)0.0241 (4)
N10.3710 (2)0.3357 (2)0.61516 (17)0.0177 (4)
N20.0259 (2)0.0611 (2)0.95949 (18)0.0230 (4)
C10.6944 (3)0.3733 (3)0.8926 (2)0.0261 (5)
H10.77300.33450.82570.031*
C20.5865 (3)0.2446 (3)0.9442 (2)0.0315 (6)
H2A0.53780.20090.87920.047*
H2B0.50530.28401.00610.047*
H2C0.64640.16530.98100.047*
C30.7778 (3)0.4463 (3)0.9858 (2)0.0305 (6)
H3A0.84730.52720.94640.046*
H3B0.83930.36881.02300.046*
H3C0.70090.49031.04860.046*
C40.8388 (3)0.8094 (3)0.6614 (2)0.0266 (5)
H40.79520.79810.58400.032*
C51.0132 (3)0.7830 (3)0.6398 (3)0.0384 (7)
H5A1.03500.68220.60550.058*
H5B1.05440.78760.71680.058*
H5C1.06340.86210.58310.058*
C60.7934 (3)0.9641 (3)0.7138 (3)0.0380 (7)
H6A0.67950.97470.72490.057*
H6B0.84101.04540.65810.057*
H6C0.83030.97180.79230.057*
C70.4224 (3)0.1924 (3)0.6265 (2)0.0198 (4)
H70.51440.16240.57550.024*
C80.3473 (3)0.0860 (3)0.7094 (2)0.0210 (5)
H80.3865−0.01530.71380.025*
C90.2132 (3)0.1289 (3)0.7867 (2)0.0194 (4)
C100.1577 (3)0.2772 (3)0.7726 (2)0.0212 (5)
H100.06530.31020.82170.025*
C110.2384 (3)0.3754 (3)0.6868 (2)0.0208 (5)
H110.19900.47580.67750.025*
C120.1396 (3)0.0206 (3)0.8798 (2)0.0225 (5)
H120.1765−0.08170.88150.027*
U11U22U33U12U13U23
Ni0.0173 (2)0.0127 (2)0.0143 (2)0.00009 (15)0.00006 (15)0.00119 (14)
S10.0197 (3)0.0198 (3)0.0170 (3)0.0034 (2)−0.0009 (2)−0.0008 (2)
S20.0208 (3)0.0174 (3)0.0183 (3)0.0039 (2)−0.0023 (2)−0.0019 (2)
P10.0192 (3)0.0193 (3)0.0158 (3)0.0020 (2)−0.0015 (2)−0.0011 (2)
O10.0243 (8)0.0249 (8)0.0174 (8)0.0055 (7)−0.0025 (6)0.0016 (6)
O20.0240 (9)0.0279 (9)0.0209 (9)−0.0010 (7)−0.0045 (7)−0.0036 (7)
N10.0182 (9)0.0170 (9)0.0165 (9)−0.0004 (7)0.0013 (7)0.0017 (7)
N20.0238 (10)0.0212 (10)0.0223 (11)−0.0065 (8)0.0006 (8)0.0090 (8)
C10.0270 (12)0.0323 (13)0.0186 (12)0.0112 (10)−0.0032 (10)0.0033 (9)
C20.0412 (15)0.0265 (13)0.0280 (14)0.0055 (11)−0.0096 (11)0.0026 (10)
C30.0256 (13)0.0412 (15)0.0250 (13)0.0024 (11)−0.0059 (10)0.0051 (11)
C40.0274 (12)0.0259 (12)0.0266 (13)−0.0038 (10)−0.0034 (10)−0.0033 (10)
C50.0279 (14)0.0344 (15)0.0503 (19)−0.0032 (12)0.0044 (12)−0.0087 (13)
C60.0298 (14)0.0289 (14)0.056 (2)0.0019 (11)−0.0081 (13)−0.0088 (13)
C70.0222 (11)0.0181 (10)0.0184 (11)0.0002 (9)−0.0008 (9)0.0019 (8)
C80.0240 (11)0.0155 (10)0.0233 (12)0.0003 (9)−0.0028 (9)0.0013 (8)
C90.0193 (11)0.0199 (11)0.0191 (11)−0.0027 (8)−0.0040 (8)0.0028 (8)
C100.0198 (11)0.0209 (11)0.0210 (12)−0.0004 (9)0.0023 (9)0.0019 (9)
C110.0209 (11)0.0184 (10)0.0213 (12)0.0023 (9)0.0020 (9)0.0049 (8)
C120.0229 (11)0.0224 (11)0.0228 (12)−0.0046 (9)−0.0062 (9)0.0056 (9)
Ni—S12.4827 (7)C3—H3A0.9800
Ni—S22.4835 (7)C3—H3B0.9800
Ni—N12.1051 (19)C3—H3C0.9800
Ni—N1i2.1051 (19)C4—C51.513 (4)
Ni—S1i2.4827 (7)C4—C61.520 (4)
Ni—S2i2.4835 (7)C4—H41.0000
S1—P11.9895 (9)C5—H5A0.9800
S2—P11.9859 (9)C5—H5B0.9800
P1—O11.5779 (17)C5—H5C0.9800
P1—O21.5934 (18)C6—H6A0.9800
O1—C11.476 (3)C6—H6B0.9800
O2—C41.464 (3)C6—H6C0.9800
N1—C71.338 (3)C7—C81.384 (3)
N1—C111.350 (3)C7—H70.9500
N2—C121.283 (3)C8—C91.399 (3)
N2—N2ii1.408 (4)C8—H80.9500
C1—C21.510 (4)C9—C101.395 (3)
C1—C31.511 (4)C9—C121.459 (3)
C1—H11.0000C10—C111.377 (3)
C2—H2A0.9800C10—H100.9500
C2—H2B0.9800C11—H110.9500
C2—H2C0.9800C12—H120.9500
N1—Ni—S1i89.02 (6)C1—C3—H3B109.5
N1i—Ni—S1i90.98 (6)H3A—C3—H3B109.5
N1—Ni—S190.98 (6)C1—C3—H3C109.5
N1i—Ni—S189.02 (6)H3A—C3—H3C109.5
N1—Ni—S2i91.02 (6)H3B—C3—H3C109.5
N1i—Ni—S2i88.98 (6)O2—C4—C5107.1 (2)
S1i—Ni—S2i82.46 (2)O2—C4—C6107.0 (2)
S1—Ni—S2i97.54 (2)C5—C4—C6113.4 (2)
N1—Ni—S288.98 (6)O2—C4—H4109.8
N1i—Ni—S291.02 (6)C5—C4—H4109.8
S1i—Ni—S297.54 (2)C6—C4—H4109.8
S1—Ni—S282.46 (2)C4—C5—H5A109.5
S1i—Ni—S1180.0C4—C5—H5B109.5
S2i—Ni—S2180.0H5A—C5—H5B109.5
N1i—Ni—N1180.0C4—C5—H5C109.5
P1—S1—Ni82.80 (3)H5A—C5—H5C109.5
P1—S2—Ni82.85 (3)H5B—C5—H5C109.5
O1—P1—O2100.84 (10)C4—C6—H6A109.5
O1—P1—S2108.61 (7)C4—C6—H6B109.5
O2—P1—S2111.61 (7)H6A—C6—H6B109.5
O1—P1—S1112.72 (7)C4—C6—H6C109.5
O2—P1—S1111.82 (7)H6A—C6—H6C109.5
S2—P1—S1110.84 (4)H6B—C6—H6C109.5
C1—O1—P1122.47 (15)N1—C7—C8122.9 (2)
C4—O2—P1119.75 (15)N1—C7—H7118.6
C7—N1—C11117.73 (19)C8—C7—H7118.6
C7—N1—Ni121.63 (15)C7—C8—C9119.4 (2)
C11—N1—Ni120.48 (15)C7—C8—H8120.3
C12—N2—N2ii111.3 (2)C9—C8—H8120.3
O1—C1—C2106.2 (2)C10—C9—C8117.6 (2)
O1—C1—C3108.7 (2)C10—C9—C12122.7 (2)
C2—C1—C3113.5 (2)C8—C9—C12119.7 (2)
O1—C1—H1109.5C11—C10—C9119.2 (2)
C2—C1—H1109.5C11—C10—H10120.4
C3—C1—H1109.5C9—C10—H10120.4
C1—C2—H2A109.5N1—C11—C10123.1 (2)
C1—C2—H2B109.5N1—C11—H11118.4
H2A—C2—H2B109.5C10—C11—H11118.4
C1—C2—H2C109.5N2—C12—C9121.1 (2)
H2A—C2—H2C109.5N2—C12—H12119.4
H2B—C2—H2C109.5C9—C12—H12119.4
C1—C3—H3A109.5
N1—Ni—S1—P1−82.10 (6)S2—Ni—N1—C7−131.96 (18)
N1i—Ni—S1—P197.90 (6)S1i—Ni—N1—C11−54.34 (18)
S2i—Ni—S1—P1−173.26 (3)S1—Ni—N1—C11125.66 (18)
S2—Ni—S1—P16.74 (3)S2i—Ni—N1—C11−136.78 (18)
N1—Ni—S2—P184.37 (6)S2—Ni—N1—C1143.22 (18)
N1i—Ni—S2—P1−95.63 (6)P1—O1—C1—C2−137.26 (18)
S1i—Ni—S2—P1173.24 (3)P1—O1—C1—C3100.3 (2)
S1—Ni—S2—P1−6.76 (3)P1—O2—C4—C5−119.8 (2)
Ni—S2—P1—O1−115.40 (7)P1—O2—C4—C6118.37 (19)
Ni—S2—P1—O2134.30 (7)C11—N1—C7—C8−1.3 (3)
Ni—S2—P1—S18.96 (3)Ni—N1—C7—C8174.02 (18)
Ni—S1—P1—O1113.02 (8)N1—C7—C8—C9−1.1 (4)
Ni—S1—P1—O2−134.19 (7)C7—C8—C9—C102.6 (3)
Ni—S1—P1—S2−8.96 (3)C7—C8—C9—C12−175.8 (2)
O2—P1—O1—C1−75.87 (19)C8—C9—C10—C11−1.8 (3)
S2—P1—O1—C1166.73 (16)C12—C9—C10—C11176.6 (2)
S1—P1—O1—C143.51 (19)C7—N1—C11—C102.1 (4)
O1—P1—O2—C4−173.76 (16)Ni—N1—C11—C10−173.22 (18)
S2—P1—O2—C4−58.58 (17)C9—C10—C11—N1−0.6 (4)
S1—P1—O2—C466.22 (17)N2ii—N2—C12—C9−179.5 (2)
S1i—Ni—N1—C7130.48 (18)C10—C9—C12—N2−5.2 (4)
S1—Ni—N1—C7−49.52 (18)C8—C9—C12—N2173.1 (2)
S2i—Ni—N1—C748.04 (18)
D—H···AD—HH···AD···AD—H···A
C8—H8···S2iii0.952.773.694 (3)164
Ni—S12.4827 (7)
Ni—S22.4835 (7)
Ni—N12.1051 (19)
S1—Ni—S282.46 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯S2i0.952.773.694 (3)164

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[[bis-(O,O'-diisobutyl dithio-phosphato-κS,S')nickel(II)]-μ-1,2-bis-(4-pyridylmethyl-ene)hydrazine-κN:N'] toluene disolvate].

Authors:  Erick Berdugo; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-13
  2 in total
  1 in total

1.  Bis[N-2-hy-droxy-ethyl,N-methyl-dithio-carbamato-κ2S,S)'-4-{[(pyridin-4-yl-methyl-idene)hydrazinyl-idene}meth-yl]pyridine-κN1)zinc(II): crystal structure and Hirshfeld surface analysis.

Authors:  Grant A Broker; Mukesh M Jotani; Edward R T Tiekink
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-15
  1 in total

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