Literature DB >> 21578156

Poly[(μ(5)-5-carboxylatotetrahydrofuran-2,3,4-tricarboxylic acid)sodium].

Jie Xu1, Wenxiang Chai, Jian Lin, Hongsheng Shi, Kangying Shu.   

Abstract

The search for the novel metal-organic frameworks (MOFs) materials using tetra-hydro-furan-2,3,4,5-tetra-carboxylic acid (THFTCA) as a versatile multi-carboxyl ligand, lead to the synthesis and the structure determination of the title compound, [Na(H(3)THFTCA)] or [Na(C(8)H(7)O(9))](n), which was obtained by a solution reaction at room temperature. The ligand is mono-deprotonated, coordinating five sodium ions through one furan oxygen atom and six carboxyl oxygen atoms. The sodium ion exhibits a distorted penta-gonal-bipyramidal NaO(7) geometry consisting of seven O atoms derived from five surrounding ligands. Two adjacent pentagonal bipyramids share an O-O edge, forming a dinuclear sodium cluster. Finally, these clusters are effectively linked by the carboxyl groups of THFTCA ligands, forming a firm metal organic framework and O-H⋯O hydrogen bonds contribute to the crystal packing.

Entities:  

Year:  2009        PMID: 21578156      PMCID: PMC2971171          DOI: 10.1107/S160053680904269X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For potential applications of metal-organic frameworks (MOFs), see: Moulton & Zaworotko (2001 ▶); Bradshaw et al. (2007 ▶). Self-assembly of selected ligands around d-transition metal ions is a widespread method for obtaining novel MOF structures, see: Leininger et al. (2000 ▶). In contrast, the s-elements are more flexible of their coordination behaviour, and maybe present in more various structures, see: Lu et al. (2007 ▶). For related MOF materials constructed from the THFTCA ligand, see: Hanson et al. (2004 ▶); Thuéry et al. (2004 ▶); Ai et al. (2008 ▶); Wang & Sevov (2007 ▶); Wang et al. (2007 ▶); Lü (2008 ▶). For related s-elements and THFTCA ligand compound structures, see: Barnes & Paton (1984 ▶) for Cs+ and Ca2+; Barnes (2002 ▶) for Na+; Paul & Martin (1967 ▶) for Rb+.

Experimental

Crystal data

[Na(C8H7O9)] M = 270.13 Monoclinic, a = 8.0663 (16) Å b = 13.417 (3) Å c = 9.7358 (19) Å β = 109.90 (3)° V = 990.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.41 × 0.28 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.921, T max = 0.980 9567 measured reflections 2263 independent reflections 2095 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.090 S = 1.09 2263 reflections 164 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.32 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680904269X/kp2234sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680904269X/kp2234Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na(C8H7O9)]F(000) = 552
Mr = 270.13Dx = 1.811 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71075 Å
Hall symbol: -P 2ybcCell parameters from 8534 reflections
a = 8.0663 (16) Åθ = 3.0–27.4°
b = 13.417 (3) ŵ = 0.20 mm1
c = 9.7358 (19) ÅT = 296 K
β = 109.90 (3)°Platelet, colorless
V = 990.7 (3) Å30.41 × 0.28 × 0.10 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer2263 independent reflections
Radiation source: fine-focus sealed tube2095 reflections with I > 2σ(I)
graphiteRint = 0.018
Detector resolution: 14.6306 pixels mm-1θmax = 27.4°, θmin = 3.0°
CCD_Profile_fitting scansh = −10→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −17→17
Tmin = 0.921, Tmax = 0.980l = −12→12
9567 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.090w = 1/[σ2(Fo2) + (0.0479P)2 + 0.4297P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2263 reflectionsΔρmax = 0.39 e Å3
164 parametersΔρmin = −0.31 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.034 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Na10.16477 (7)0.01271 (4)0.39826 (6)0.02678 (17)
O10.19961 (11)0.20181 (7)0.39121 (9)0.0179 (2)
O2−0.03876 (14)0.10910 (7)0.48915 (13)0.0313 (3)
O3−0.17693 (14)0.25311 (8)0.49566 (13)0.0333 (3)
H3−0.24540.21890.52520.033*
O40.02774 (14)0.47842 (9)0.33101 (13)0.0362 (3)
O50.31727 (15)0.46326 (10)0.42755 (16)0.0506 (4)
H50.32040.51630.38270.051*
O60.60941 (12)0.37079 (7)0.68721 (11)0.0251 (2)
O70.39834 (13)0.43913 (7)0.75861 (11)0.0281 (2)
H70.47780.47980.80280.028*
O80.39053 (12)0.07324 (7)0.60685 (11)0.0234 (2)
O90.63546 (12)0.13823 (7)0.58976 (12)0.0272 (2)
C110.05765 (15)0.26035 (9)0.40594 (13)0.0167 (2)
H11−0.01670.28190.30910.017*
C220.14282 (15)0.34871 (9)0.50496 (13)0.0159 (2)
H220.06840.37060.55930.016*
C330.31740 (15)0.30122 (8)0.60199 (12)0.0147 (2)
H330.28770.25980.67340.015*
C440.36719 (15)0.23349 (8)0.49541 (12)0.0149 (2)
H440.43370.27050.44700.015*
C55−0.05776 (16)0.19811 (10)0.46899 (14)0.0202 (3)
C660.15670 (16)0.43746 (9)0.41175 (14)0.0197 (3)
C770.45783 (16)0.37456 (9)0.68641 (13)0.0178 (2)
C880.47422 (15)0.14121 (9)0.56952 (13)0.0163 (2)
U11U22U33U12U13U23
Na10.0233 (3)0.0215 (3)0.0317 (3)−0.0036 (2)0.0044 (2)−0.0026 (2)
O10.0145 (4)0.0192 (4)0.0191 (4)0.0008 (3)0.0043 (3)−0.0038 (3)
O20.0268 (5)0.0179 (5)0.0538 (7)0.0001 (4)0.0195 (5)0.0058 (4)
O30.0272 (5)0.0212 (5)0.0619 (7)−0.0005 (4)0.0286 (5)0.0012 (5)
O40.0261 (5)0.0321 (6)0.0424 (6)0.0028 (4)0.0012 (5)0.0170 (5)
O50.0222 (6)0.0509 (7)0.0725 (9)−0.0036 (5)0.0078 (6)0.0436 (7)
O60.0173 (5)0.0233 (5)0.0327 (5)−0.0026 (4)0.0059 (4)0.0003 (4)
O70.0258 (5)0.0243 (5)0.0355 (5)−0.0092 (4)0.0123 (4)−0.0145 (4)
O80.0186 (4)0.0189 (4)0.0319 (5)0.0009 (4)0.0077 (4)0.0092 (4)
O90.0158 (4)0.0232 (5)0.0433 (6)0.0031 (4)0.0112 (4)0.0073 (4)
C110.0146 (5)0.0151 (5)0.0195 (5)0.0006 (4)0.0047 (4)0.0002 (4)
C220.0140 (5)0.0138 (5)0.0199 (5)−0.0006 (4)0.0056 (4)0.0000 (4)
C330.0154 (5)0.0128 (5)0.0161 (5)−0.0004 (4)0.0058 (4)0.0007 (4)
C440.0142 (5)0.0142 (5)0.0164 (5)−0.0006 (4)0.0052 (4)0.0012 (4)
C550.0152 (5)0.0188 (6)0.0256 (6)−0.0023 (5)0.0057 (5)−0.0010 (5)
C660.0190 (6)0.0151 (5)0.0238 (6)0.0001 (4)0.0057 (5)0.0014 (4)
C770.0197 (6)0.0149 (5)0.0171 (5)−0.0017 (4)0.0042 (4)0.0021 (4)
C880.0158 (5)0.0149 (5)0.0182 (5)0.0009 (4)0.0058 (4)−0.0008 (4)
Na1—O4i2.2903 (14)O7—C771.3056 (16)
Na1—O82.3626 (14)O7—Na1vi2.7495 (13)
Na1—O2ii2.3800 (12)O7—H70.8400
Na1—O22.4778 (13)O8—C881.2595 (15)
Na1—O12.5561 (12)O9—C881.2480 (15)
Na1—O9iii2.5658 (12)O9—Na1iii2.5658 (12)
Na1—O7iv2.7495 (13)C11—C551.5264 (17)
O1—C111.4354 (14)C11—C221.5349 (16)
O1—C441.4502 (14)C11—H110.9734
O2—C551.2114 (16)C22—C661.5242 (17)
O2—Na1ii2.3800 (12)C22—C331.5413 (16)
O3—C551.3061 (16)C22—H220.9710
O3—H30.8400C33—C771.5143 (16)
O4—C661.2021 (17)C33—C441.5322 (16)
O4—Na1v2.2903 (14)C33—H330.9811
O5—C661.2982 (17)C44—C881.5410 (16)
O5—H50.8402C44—H440.9638
O6—C771.2210 (16)
O4i—Na1—O8167.22 (5)O1—C11—C22106.48 (9)
O4i—Na1—O2ii93.25 (5)C55—C11—C22111.95 (10)
O8—Na1—O2ii99.51 (4)O1—C11—H11108.4
O4i—Na1—O298.11 (5)C55—C11—H11107.0
O8—Na1—O285.65 (4)C22—C11—H11112.0
O2ii—Na1—O275.83 (4)C66—C22—C11109.71 (10)
O4i—Na1—O1102.56 (4)C66—C22—C33116.80 (10)
O8—Na1—O167.81 (3)C11—C22—C33100.71 (9)
O2ii—Na1—O1139.65 (4)C66—C22—H22105.8
O2—Na1—O165.41 (3)C11—C22—H22110.4
O4i—Na1—O9iii95.32 (5)C33—C22—H22113.4
O8—Na1—O9iii86.78 (4)C77—C33—C44115.65 (10)
O2ii—Na1—O9iii78.30 (4)C77—C33—C22114.99 (10)
O2—Na1—O9iii151.39 (4)C44—C33—C22103.04 (9)
O1—Na1—O9iii135.36 (4)C77—C33—H33107.5
O4i—Na1—O7iv85.22 (5)C44—C33—H33109.1
O8—Na1—O7iv83.50 (4)C22—C33—H33106.0
O2ii—Na1—O7iv149.44 (4)O1—C44—C33104.52 (9)
O2—Na1—O7iv134.65 (4)O1—C44—C88109.41 (9)
O1—Na1—O7iv69.72 (3)C33—C44—C88113.18 (9)
O9iii—Na1—O7iv71.49 (4)O1—C44—H44110.5
C11—O1—C44110.80 (9)C33—C44—H44110.1
C11—O1—Na1116.21 (7)C88—C44—H44109.1
C44—O1—Na1110.91 (6)O2—C55—O3125.86 (12)
C55—O2—Na1ii134.52 (9)O2—C55—C11122.93 (12)
C55—O2—Na1121.28 (9)O3—C55—C11111.21 (11)
Na1ii—O2—Na1104.17 (4)O4—C66—O5124.19 (13)
C55—O3—H3111.9O4—C66—C22121.59 (12)
C66—O4—Na1v151.37 (11)O5—C66—C22114.22 (11)
C66—O5—H5111.7O6—C77—O7125.09 (12)
C77—O7—Na1vi149.49 (8)O6—C77—C33122.61 (11)
C77—O7—H7110.5O7—C77—C33112.29 (11)
Na1vi—O7—H797.2O9—C88—O8124.29 (11)
C88—O8—Na1109.44 (8)O9—C88—C44119.16 (11)
C88—O9—Na1iii129.58 (8)O8—C88—C44116.55 (10)
O1—C11—C55110.94 (10)
O4i—Na1—O1—C1177.60 (8)C11—C22—C33—C77164.09 (10)
O8—Na1—O1—C11−111.21 (8)C66—C22—C33—C44−81.34 (12)
O2ii—Na1—O1—C11−33.01 (10)C11—C22—C33—C4437.35 (11)
O2—Na1—O1—C11−15.66 (7)C11—O1—C44—C3312.61 (12)
O9iii—Na1—O1—C11−171.25 (7)Na1—O1—C44—C33−117.99 (7)
O7iv—Na1—O1—C11157.62 (8)C11—O1—C44—C88134.10 (10)
O4i—Na1—O1—C44−154.68 (7)Na1—O1—C44—C883.50 (10)
O8—Na1—O1—C4416.50 (7)C77—C33—C44—O1−157.88 (9)
O2ii—Na1—O1—C4494.70 (9)C22—C33—C44—O1−31.56 (11)
O2—Na1—O1—C44112.05 (8)C77—C33—C44—C8883.16 (12)
O9iii—Na1—O1—C44−43.54 (9)C22—C33—C44—C88−150.52 (10)
O7iv—Na1—O1—C44−74.67 (7)Na1ii—O2—C55—O3−7.4 (2)
O4i—Na1—O2—C55−87.32 (12)Na1—O2—C55—O3170.75 (11)
O8—Na1—O2—C5580.39 (11)Na1ii—O2—C55—C11173.27 (9)
O2ii—Na1—O2—C55−178.65 (14)Na1—O2—C55—C11−8.56 (18)
O1—Na1—O2—C5512.84 (10)O1—C11—C55—O2−6.66 (17)
O9iii—Na1—O2—C55155.50 (10)C22—C11—C55—O2−125.45 (14)
O7iv—Na1—O2—C553.96 (14)O1—C11—C55—O3173.94 (10)
O4i—Na1—O2—Na1ii91.33 (5)C22—C11—C55—O355.15 (14)
O8—Na1—O2—Na1ii−100.96 (5)Na1v—O4—C66—O573.4 (3)
O2ii—Na1—O2—Na1ii0.0Na1v—O4—C66—C22−106.3 (2)
O1—Na1—O2—Na1ii−168.51 (6)C11—C22—C66—O465.15 (16)
O9iii—Na1—O2—Na1ii−25.85 (10)C33—C22—C66—O4178.86 (12)
O7iv—Na1—O2—Na1ii−177.39 (5)C11—C22—C66—O5−114.57 (14)
O4i—Na1—O8—C883.2 (2)C33—C22—C66—O5−0.86 (17)
O2ii—Na1—O8—C88−179.35 (8)Na1vi—O7—C77—O6−151.33 (12)
O2—Na1—O8—C88−104.52 (9)Na1vi—O7—C77—C3327.3 (2)
O1—Na1—O8—C88−39.34 (8)C44—C33—C77—O6−10.65 (16)
O9iii—Na1—O8—C88103.09 (9)C22—C33—C77—O6−130.65 (12)
O7iv—Na1—O8—C8831.37 (8)C44—C33—C77—O7170.70 (10)
C44—O1—C11—C55−110.30 (11)C22—C33—C77—O750.70 (14)
Na1—O1—C11—C5517.46 (12)Na1iii—O9—C88—O829.64 (19)
C44—O1—C11—C2211.74 (12)Na1iii—O9—C88—C44−150.88 (8)
Na1—O1—C11—C22139.51 (7)Na1—O8—C88—O9−120.38 (12)
O1—C11—C22—C6693.14 (11)Na1—O8—C88—C4460.13 (12)
C55—C11—C22—C66−145.46 (10)O1—C44—C88—O9138.01 (11)
O1—C11—C22—C33−30.58 (11)C33—C44—C88—O9−105.88 (13)
C55—C11—C22—C3390.82 (11)O1—C44—C88—O8−42.47 (14)
C66—C22—C33—C7745.40 (14)C33—C44—C88—O873.63 (13)
D—H···AD—HH···AD···AD—H···A
O3—H3···O9vii0.841.702.5395 (15)173
O5—H5···O6viii0.841.832.6468 (16)165
O7—H7···O8ix0.841.682.5169 (14)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O9i0.841.702.5395 (15)173
O5—H5⋯O6ii0.841.832.6468 (16)165
O7—H7⋯O8iii0.841.682.5169 (14)171

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  From molecules to crystal engineering: supramolecular isomerism and polymorphism in network solids.

Authors:  B Moulton; M J Zaworotko
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  Self-assembly of discrete cyclic nanostructures mediated by transition metals.

Authors:  S Leininger; B Olenyuk; P J Stang
Journal:  Chem Rev       Date:  2000-03-08       Impact factor: 60.622

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Reversible concerted ligand substitution at alternating metal sites in an extended solid.

Authors:  Darren Bradshaw; John E Warren; Matthew J Rosseinsky
Journal:  Science       Date:  2007-02-16       Impact factor: 47.728

5.  Reversible repositioning of zinc atoms within single crystals of a zinc polycarboxylate with an open-framework structure.

Authors:  Kenneth Hanson; Nathalie Calin; Daniel Bugaris; Michael Scancella; Slavi C Sevov
Journal:  J Am Chem Soc       Date:  2004-09-01       Impact factor: 15.419

6.  Uranyl-based metallamacrocycles: tri- and tetranuclear complexes with (2R,3R,4S,5S)-tetrahydrofurantetracarboxylic acid.

Authors:  Pierre Thuéry; Claude Villiers; Joël Jaud; Michel Ephritikhine; Bernardo Masci
Journal:  J Am Chem Soc       Date:  2004-06-09       Impact factor: 15.419

7.  Poly[[(μ-3,4-dicarboxy-tetra-hydro-furan-2,5-dicarboxyl-ato-κO,O,O:O)(1,10-phenanthroline-κN,N')copper(II)] 0.69-hydrate].

Authors:  Yuanqi Lü
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06
  7 in total

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