Literature DB >> 21578149

μ-Succinato-κO:O-bis[(2,2'-bipyridine-κN,N')copper(II)] succinate dodeca-hydrate.

Jian-Li Lin1, Wei Xu.   

Abstract

In the title compound, [Cu(2)(C(4)H(4)O(4))(C(10)H(8)N(2))(4)]C(4)H(4)O(4)·12H(2)O, C(10)H(8)N(2)), the centrosymmetic dinuclear cations, succinate anions and water mol-ecules are hydrogen bonded into layers parallel to (010). The Cu atom is square-pyramidally coordinated by one atom of the succinato ligand and four N atoms of two 2,2'-bipyridine ligands. The 12 water mol-ecules form a new type of water cluster.

Entities:  

Year:  2009        PMID: 21578149      PMCID: PMC2971106          DOI: 10.1107/S160053680904224X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For metal-organic coordination polymers, see: Batten & Robson (1998 ▶); Rao et al. (2004 ▶); Zheng et al. (2004 ▶). The configuration of water clusters depends on the environment of the host, see: Wei et al. (2006 ▶).

Experimental

Crystal data

[Cu2(C4H4O4)(C10H8N2)4]C4H4O4·12H2O M = 1200.15 Triclinic, a = 10.502 (2) Å b = 10.764 (2) Å c = 12.892 (3) Å α = 77.21 (3)° β = 77.99 (3)° γ = 79.85 (3)° V = 1377.1 (5) Å3 Z = 1 Mo Kα radiation μ = 0.85 mm−1 T = 295 K 0.34 × 0.27 × 0.19 mm

Data collection

Bruker P4 diffractometer Absorption correction: ψ scan (XSCANS, Siemens, 1996 ▶) T min = 0.750, T max = 0.844 5721 measured reflections 4853 independent reflections 3856 reflections with I > 2σ(I) R int = 0.025 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.145 S = 1.07 4853 reflections 353 parameters 18 restraints H-atom parameters constrained Δρmax = 1.03 e Å−3 Δρmin = −1.58 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680904224X/ng2666sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680904224X/ng2666Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C4H4O4)(C10H8N2)4]C4H4O4·12H2OZ = 1
Mr = 1200.15F(000) = 626
Triclinic, P1Dx = 1.447 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.502 (2) ÅCell parameters from 25 reflections
b = 10.764 (2) Åθ = 5.0–12.5°
c = 12.892 (3) ŵ = 0.85 mm1
α = 77.21 (3)°T = 295 K
β = 77.99 (3)°Block, blue
γ = 79.85 (3)°0.34 × 0.27 × 0.19 mm
V = 1377.1 (5) Å3
Bruker P4 diffractometer3856 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.025
graphiteθmax = 25.0°, θmin = 1.7°
θ/2θ scansh = −1→12
Absorption correction: ψ scan XSCANSk = −12→12
Tmin = 0.750, Tmax = 0.844l = −15→15
5721 measured reflections3 standard reflections every 97 reflections
4853 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0531P)2 + 2.9966P] where P = (Fo2 + 2Fc2)/3
4853 reflections(Δ/σ)max = 0.001
353 parametersΔρmax = 1.03 e Å3
18 restraintsΔρmin = −1.58 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.74197 (5)0.97679 (5)0.74602 (4)0.03307 (17)
N10.7538 (3)1.0058 (3)0.8941 (3)0.0375 (8)
N20.6286 (4)0.8488 (3)0.8385 (3)0.0393 (8)
N30.9308 (3)0.8594 (3)0.7123 (3)0.0385 (8)
N40.8548 (3)1.1107 (3)0.6606 (2)0.0328 (7)
O10.6673 (3)0.9791 (3)0.6165 (2)0.0370 (7)
O20.5113 (3)1.1205 (3)0.6850 (2)0.0479 (8)
O30.3066 (4)0.3885 (4)0.4609 (3)0.0632 (10)
O40.4199 (4)0.4917 (4)0.3143 (3)0.0719 (11)
O50.7964 (4)0.5153 (5)0.0060 (3)0.0875 (14)
O60.9811 (4)0.6789 (4)−0.0001 (3)0.0816 (12)
O70.0176 (4)0.3001 (5)0.7912 (3)0.0787 (12)
O80.2760 (3)0.2866 (3)0.6727 (3)0.0581 (9)
O90.6523 (4)0.5599 (4)0.2004 (3)0.0639 (10)
O100.2260 (5)0.5285 (5)0.1913 (4)0.0970 (16)
C10.8295 (5)1.0819 (5)0.9166 (4)0.0481 (11)
H1A0.87741.13390.86000.058*
C20.8378 (6)1.0848 (5)1.0216 (4)0.0603 (14)
H2A0.89151.13731.03530.072*
C30.7667 (6)1.0101 (6)1.1047 (4)0.0670 (16)
H3A0.77101.01171.17570.080*
C40.6883 (6)0.9320 (5)1.0835 (4)0.0559 (13)
H4A0.63890.88081.13970.067*
C50.6844 (4)0.9312 (4)0.9766 (3)0.0380 (10)
C60.6070 (4)0.8479 (4)0.9453 (3)0.0385 (10)
C70.5218 (5)0.7736 (5)1.0173 (4)0.0535 (13)
H7A0.50690.77581.09050.064*
C80.4584 (6)0.6953 (5)0.9794 (5)0.0652 (15)
H8A0.39980.64451.02670.078*
C90.4830 (6)0.6936 (5)0.8710 (5)0.0645 (15)
H9A0.44230.64050.84410.077*
C100.5681 (5)0.7709 (5)0.8026 (4)0.0524 (12)
H10A0.58440.76940.72910.063*
C110.9635 (5)0.7332 (5)0.7468 (4)0.0522 (12)
H11A0.89720.68370.78150.063*
C121.0915 (6)0.6737 (5)0.7330 (4)0.0642 (16)
H12A1.11140.58600.75850.077*
C131.1884 (6)0.7463 (6)0.6812 (5)0.0660 (16)
H13A1.27580.70870.67210.079*
C141.1561 (5)0.8762 (5)0.6421 (4)0.0558 (13)
H14A1.22100.92620.60460.067*
C151.0263 (4)0.9304 (4)0.6595 (3)0.0373 (10)
C160.9817 (4)1.0698 (4)0.6231 (3)0.0346 (9)
C171.0628 (4)1.1533 (5)0.5547 (3)0.0443 (11)
H17A1.14951.12360.52810.053*
C181.0132 (5)1.2814 (5)0.5267 (4)0.0517 (12)
H18A1.06661.33890.48140.062*
C190.8851 (5)1.3235 (5)0.5658 (4)0.0494 (12)
H19A0.85071.40960.54800.059*
C200.8082 (5)1.2362 (4)0.6321 (3)0.0420 (10)
H20A0.72101.26460.65820.050*
C210.5588 (4)1.0531 (4)0.6155 (3)0.0334 (9)
C220.4878 (5)1.0601 (4)0.5229 (4)0.0428 (10)
H22A0.39411.07960.54790.051*
H22B0.51421.13060.46550.051*
C230.4059 (5)0.4377 (4)0.4120 (4)0.0452 (11)
C240.5143 (5)0.4410 (4)0.4746 (4)0.0441 (11)
H24A0.52010.36440.53060.053*
H24B0.59810.44150.42590.053*
H5B0.76660.4960−0.04360.080*
H5C0.74440.53610.06140.079*
H6B0.93470.6242−0.00380.072*
H6C1.05550.6304−0.00390.075*
H7B0.02800.33670.84050.071*
H7C0.09440.30140.75540.072*
H8B0.34820.23770.67750.073*
H8C0.27700.31440.60580.060*
H9B0.67690.59810.24140.054*
H9C0.57930.54000.23870.061*
H10B0.15140.56520.21540.092*
H10C0.26380.50220.24590.094*
U11U22U33U12U13U23
Cu10.0336 (3)0.0362 (3)0.0252 (3)0.0014 (2)−0.00311 (19)−0.00379 (19)
N10.039 (2)0.043 (2)0.0283 (17)0.0003 (16)−0.0056 (15)−0.0060 (15)
N20.041 (2)0.0361 (19)0.0363 (19)0.0005 (16)−0.0058 (16)−0.0032 (15)
N30.041 (2)0.0392 (19)0.0289 (17)0.0054 (16)−0.0042 (15)−0.0024 (14)
N40.0351 (19)0.0361 (18)0.0243 (16)−0.0008 (15)−0.0037 (14)−0.0043 (13)
O10.0312 (15)0.0495 (17)0.0308 (14)0.0045 (13)−0.0103 (12)−0.0118 (12)
O20.0494 (19)0.0567 (19)0.0376 (16)0.0090 (15)−0.0112 (14)−0.0185 (15)
O30.059 (2)0.076 (3)0.051 (2)−0.014 (2)−0.0167 (18)0.0055 (18)
O40.068 (3)0.111 (3)0.0383 (19)−0.023 (2)−0.0130 (17)−0.007 (2)
O50.066 (3)0.141 (4)0.066 (3)−0.011 (3)−0.002 (2)−0.053 (3)
O60.088 (3)0.095 (3)0.068 (3)−0.020 (3)−0.005 (2)−0.030 (2)
O70.060 (2)0.122 (4)0.057 (2)−0.017 (2)0.0023 (19)−0.032 (2)
O80.048 (2)0.073 (2)0.0435 (18)0.0064 (17)−0.0043 (15)−0.0068 (16)
O90.065 (2)0.078 (3)0.0459 (19)−0.005 (2)−0.0001 (17)−0.0187 (18)
O100.104 (4)0.114 (4)0.080 (3)0.016 (3)−0.048 (3)−0.027 (3)
C10.052 (3)0.055 (3)0.040 (2)−0.010 (2)−0.007 (2)−0.012 (2)
C20.069 (4)0.068 (3)0.052 (3)−0.007 (3)−0.020 (3)−0.023 (3)
C30.087 (4)0.081 (4)0.035 (3)−0.003 (3)−0.018 (3)−0.016 (3)
C40.068 (3)0.064 (3)0.030 (2)−0.005 (3)−0.006 (2)−0.002 (2)
C50.039 (2)0.039 (2)0.029 (2)0.0052 (18)−0.0038 (18)−0.0028 (17)
C60.036 (2)0.034 (2)0.036 (2)0.0076 (18)−0.0032 (18)0.0004 (17)
C70.051 (3)0.048 (3)0.047 (3)0.000 (2)0.001 (2)0.006 (2)
C80.060 (3)0.048 (3)0.074 (4)−0.015 (3)0.006 (3)0.008 (3)
C90.065 (4)0.049 (3)0.078 (4)−0.016 (3)−0.009 (3)−0.008 (3)
C100.059 (3)0.045 (3)0.053 (3)−0.008 (2)−0.008 (2)−0.009 (2)
C110.059 (3)0.043 (3)0.043 (3)0.006 (2)−0.005 (2)0.000 (2)
C120.070 (4)0.055 (3)0.054 (3)0.027 (3)−0.012 (3)−0.009 (2)
C130.052 (3)0.073 (4)0.067 (3)0.028 (3)−0.012 (3)−0.027 (3)
C140.038 (3)0.067 (3)0.057 (3)0.009 (2)0.000 (2)−0.021 (3)
C150.035 (2)0.049 (2)0.027 (2)0.0061 (19)−0.0053 (17)−0.0140 (18)
C160.032 (2)0.048 (2)0.0248 (19)−0.0017 (18)−0.0056 (16)−0.0114 (17)
C170.037 (2)0.058 (3)0.035 (2)−0.008 (2)0.0010 (19)−0.010 (2)
C180.061 (3)0.056 (3)0.039 (2)−0.023 (3)−0.005 (2)−0.003 (2)
C190.061 (3)0.039 (2)0.046 (3)−0.007 (2)−0.012 (2)−0.002 (2)
C200.043 (3)0.040 (2)0.039 (2)0.0033 (19)−0.0093 (19)−0.0043 (19)
C210.035 (2)0.038 (2)0.0276 (19)−0.0058 (18)−0.0065 (17)−0.0046 (17)
C220.042 (3)0.045 (2)0.043 (2)0.009 (2)−0.017 (2)−0.014 (2)
C230.053 (3)0.046 (3)0.037 (2)0.006 (2)−0.013 (2)−0.015 (2)
C240.044 (3)0.044 (2)0.044 (2)0.009 (2)−0.012 (2)−0.015 (2)
Cu1—O11.981 (3)C4—C51.389 (6)
Cu1—N22.000 (4)C4—H4A0.9300
Cu1—N42.013 (3)C5—C61.476 (7)
Cu1—N12.033 (3)C6—C71.371 (6)
Cu1—N32.172 (3)C7—C81.381 (8)
Cu1—O22.795 (3)C7—H7A0.9300
N1—C51.347 (5)C8—C91.371 (8)
N1—C11.349 (6)C8—H8A0.9300
N2—C101.343 (6)C9—C101.370 (7)
N2—C61.346 (5)C9—H9A0.9300
N3—C111.340 (6)C10—H10A0.9300
N3—C151.345 (6)C11—C121.376 (7)
N4—C201.349 (5)C11—H11A0.9300
N4—C161.349 (5)C12—C131.363 (8)
O1—C211.271 (5)C12—H12A0.9300
O2—C211.246 (5)C13—C141.385 (8)
O3—C231.240 (6)C13—H13A0.9300
O4—C231.254 (6)C14—C151.377 (6)
O5—H5B0.8457C14—H14A0.9300
O5—H5C0.8510C15—C161.491 (6)
O6—H6B0.8421C16—C171.385 (6)
O6—H6C0.8584C17—C181.381 (7)
O7—H7B0.8517C17—H17A0.9300
O7—H7C0.8424C18—C191.368 (7)
O8—H8B0.8491C18—H18A0.9300
O8—H8C0.8459C19—C201.375 (6)
O9—H9B0.8404C19—H19A0.9300
O9—H9C0.8548C20—H20A0.9300
O10—H10B0.8424C21—C221.516 (6)
O10—H10C0.8505C22—C22i1.499 (8)
C1—C21.381 (7)C22—H22A0.9700
C1—H1A0.9300C22—H22B0.9700
C2—C31.360 (8)C23—C241.536 (6)
C2—H2A0.9300C24—C24ii1.511 (8)
C3—C41.378 (8)C24—H24A0.9700
C3—H3A0.9300C24—H24B0.9700
O1—Cu1—N292.51 (14)C9—C8—H8A120.5
O1—Cu1—N490.27 (13)C7—C8—H8A120.5
N2—Cu1—N4176.56 (14)C10—C9—C8119.4 (6)
O1—Cu1—N1159.82 (13)C10—C9—H9A120.3
N2—Cu1—N180.65 (15)C8—C9—H9A120.3
N4—Cu1—N196.06 (14)N2—C10—C9121.9 (5)
O1—Cu1—N3101.12 (12)N2—C10—H10A119.1
N2—Cu1—N3102.72 (14)C9—C10—H10A119.1
N4—Cu1—N378.70 (13)N3—C11—C12122.6 (5)
N1—Cu1—N398.90 (14)N3—C11—H11A118.7
O1—Cu1—O251.85 (10)C12—C11—H11A118.7
N2—Cu1—O286.73 (13)C13—C12—C11118.5 (5)
N4—Cu1—O293.40 (12)C13—C12—H12A120.7
N1—Cu1—O2108.49 (12)C11—C12—H12A120.7
N3—Cu1—O2152.18 (11)C12—C13—C14119.6 (5)
C5—N1—C1118.7 (4)C12—C13—H13A120.2
C5—N1—Cu1113.8 (3)C14—C13—H13A120.2
C1—N1—Cu1127.3 (3)C15—C14—C13119.0 (5)
C10—N2—C6118.7 (4)C15—C14—H14A120.5
C10—N2—Cu1125.7 (3)C13—C14—H14A120.5
C6—N2—Cu1115.6 (3)N3—C15—C14121.4 (4)
C11—N3—C15118.7 (4)N3—C15—C16115.4 (4)
C11—N3—Cu1128.5 (3)C14—C15—C16123.2 (4)
C15—N3—Cu1112.3 (3)N4—C16—C17121.3 (4)
C20—N4—C16118.7 (4)N4—C16—C15115.5 (4)
C20—N4—Cu1123.6 (3)C17—C16—C15123.2 (4)
C16—N4—Cu1117.4 (3)C18—C17—C16119.0 (4)
C21—O1—Cu1111.5 (2)C18—C17—H17A120.5
C21—O2—Cu173.5 (2)C16—C17—H17A120.5
H5B—O5—H5C120.3C19—C18—C17119.8 (4)
H6B—O6—H6C97.8C19—C18—H18A120.1
H7B—O7—H7C97.0C17—C18—H18A120.1
H8B—O8—H8C105.8C18—C19—C20118.8 (4)
H9B—O9—H9C100.3C18—C19—H19A120.6
H10B—O10—H10C104.9C20—C19—H19A120.6
N1—C1—C2121.8 (5)N4—C20—C19122.3 (4)
N1—C1—H1A119.1N4—C20—H20A118.8
C2—C1—H1A119.1C19—C20—H20A118.8
C3—C2—C1119.3 (5)O2—C21—O1123.1 (4)
C3—C2—H2A120.4O2—C21—C22119.7 (4)
C1—C2—H2A120.4O1—C21—C22117.2 (3)
C2—C3—C4119.9 (5)C22i—C22—C21114.7 (4)
C2—C3—H3A120.1C22i—C22—H22A108.6
C4—C3—H3A120.1C21—C22—H22A108.6
C3—C4—C5118.7 (5)C22i—C22—H22B108.6
C3—C4—H4A120.6C21—C22—H22B108.6
C5—C4—H4A120.6H22A—C22—H22B107.6
N1—C5—C4121.6 (4)O3—C23—O4123.4 (5)
N1—C5—C6115.5 (4)O3—C23—C24119.0 (4)
C4—C5—C6122.9 (4)O4—C23—C24117.5 (5)
N2—C6—C7121.9 (5)C24ii—C24—C23110.8 (4)
N2—C6—C5114.1 (4)C24ii—C24—H24A109.5
C7—C6—C5124.0 (4)C23—C24—H24A109.5
C6—C7—C8119.1 (5)C24ii—C24—H24B109.5
C6—C7—H7A120.5C23—C24—H24B109.5
C8—C7—H7A120.5H24A—C24—H24B108.1
C9—C8—C7119.0 (5)
C23—C24—C24ii—C23ii180.000 (1)
D—H···AD—HH···AD···AD—H···A
O5—H5B···O10iii0.851.962.750 (6)154
O5—H5C···O90.851.902.739 (6)169
O6—H6B···O50.841.992.820 (6)168
O6—H6C···O5iv0.862.012.847 (7)167
O7—H7B···O6ii0.852.012.755 (5)146
O7—H7C···O80.841.982.820 (5)175
O8—H8B···O2v0.851.952.795 (5)177
O8—H8C···O30.851.852.682 (5)169
O9—H9B···O8ii0.842.022.850 (5)172
O9—H9C···O40.861.852.704 (6)176
O10—H10B···O7vi0.842.092.877 (7)156
O10—H10C···O40.851.992.758 (7)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5B⋯O10i0.851.962.750 (6)154
O5—H5C⋯O90.851.902.739 (6)169
O6—H6B⋯O50.841.992.820 (6)168
O6—H6C⋯O5ii0.862.012.847 (7)167
O7—H7B⋯O6iii0.852.012.755 (5)146
O7—H7C⋯O80.841.982.820 (5)175
O8—H8B⋯O2iv0.851.952.795 (5)177
O8—H8C⋯O30.851.852.682 (5)169
O9—H9B⋯O8iii0.842.022.850 (5)172
O9—H9C⋯O40.861.852.704 (6)176
O10—H10B⋯O7v0.842.092.877 (7)156
O10—H10C⋯O40.851.992.758 (7)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A large protonated water cluster H+(H2O)27 in a 3D metal-organic framework.

Authors:  Meilin Wei; Cheng He; Weijie Hua; Chunying Duan; Shuhua Li; Qingjin Meng
Journal:  J Am Chem Soc       Date:  2006-10-18       Impact factor: 15.419

3.  Coordination polymers based on cobridging of rigid and flexible spacer ligands: syntheses, crystal structures, and magnetic properties of [Mn(bpy)(H2O)(C4H4O4)].0.5bpy, Mn(bpy)(C5H6O4), and Mn(bpy)(C6H8O4).

Authors:  Y-Q Zheng; J-L Lin; Z-P Kong
Journal:  Inorg Chem       Date:  2004-04-19       Impact factor: 5.165

4.  Metal carboxylates with open architectures.

Authors:  C N R Rao; Srinivasan Natarajan; R Vaidhyanathan
Journal:  Angew Chem Int Ed Engl       Date:  2004-03-12       Impact factor: 15.336

  4 in total

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