Literature DB >> 21578110

Bis[2-(benzimidazol-2-ylsulfan-yl)acetato]bis-(2,2'-bipyridine)cadmium(II).

Lin Cheng1, Yan-Yan Sun, Jian-Quan Wang, Ya-Wen Zhang.   

Abstract

In the structure of the title compound, [Cd(C(9)H(7)N(2)O(2)S)(2)(C(10)H(8)N(2))(2)], the complex mol-ecules are located on a crystallographic twofold rotation axis and the Cd(II) ion is octa-hedrally coordinated by two chelating 2,2'-bipyridine ligands and two O atoms from the carboxyl-ate groups of two 2-(benzimidazol-2-ylsulfan-yl)acetate ligands. The two carboxyl-ate ligands adopt a cis configuration with respect to each other. Within each of these ligands, the imidazole fragments are bent back in a loop towards the acetyl groups, forming intra-molecular N-H⋯O hydrogen bonds, which help to stablilize the mononuclear complex. Adjacent mol-ecules are further linked by weak C-H⋯O hydrogen bonds, resulting in a chain along the c axis.

Entities:  

Year:  2009        PMID: 21578110      PMCID: PMC2971152          DOI: 10.1107/S1600536809039592

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Matthews et al. (1998 ▶); Cheng et al. (2009 ▶).

Experimental

Crystal data

[Cd(C9H7N2O2S)2(C10H8N2)2] M = 839.25 Monoclinic, a = 26.733 (2) Å b = 9.3043 (8) Å c = 16.4220 (14) Å β = 120.2540 (10)° V = 3528.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.79 mm−1 T = 295 K 0.20 × 0.18 × 0.12 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.858, T max = 0.911 9308 measured reflections 3460 independent reflections 2946 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.069 S = 1.05 3460 reflections 244 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.47 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809039592/zl2228sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039592/zl2228Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C9H7N2O2S)2(C10H8N2)2]F(000) = 1704
Mr = 839.25Dx = 1.580 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 783 reflections
a = 26.733 (2) Åθ = 2.4–28.0°
b = 9.3043 (8) ŵ = 0.79 mm1
c = 16.4220 (14) ÅT = 295 K
β = 120.254 (1)°Block, colorless
V = 3528.3 (5) Å30.20 × 0.18 × 0.12 mm
Z = 4
Bruker SMART CCD diffractometer3460 independent reflections
Radiation source: fine-focus sealed tube2946 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −32→30
Tmin = 0.858, Tmax = 0.911k = −11→11
9308 measured reflectionsl = −20→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0305P)2 + 1.2632P] where P = (Fo2 + 2Fc2)/3
3460 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.00000.27478 (3)0.25000.03543 (10)
S10.15271 (3)0.05110 (8)0.52528 (4)0.04872 (19)
C10.03416 (10)0.1120 (3)0.43699 (17)0.0373 (6)
C20.08216 (10)0.0184 (3)0.51125 (16)0.0415 (6)
H2A0.0721−0.08170.49450.050*
H2B0.08430.03460.57130.050*
C30.15201 (10)−0.0542 (3)0.43638 (16)0.0388 (6)
C40.17937 (11)−0.1829 (3)0.35876 (17)0.0413 (6)
C50.20952 (13)−0.2670 (3)0.3279 (2)0.0540 (7)
H5A0.2493−0.28090.36530.065*
C60.17850 (13)−0.3294 (3)0.2399 (2)0.0567 (7)
H6A0.1979−0.38600.21790.068*
C70.11932 (13)−0.3099 (3)0.1835 (2)0.0561 (8)
H7A0.1000−0.35230.12420.067*
C80.08838 (13)−0.2290 (3)0.2134 (2)0.0524 (7)
H8A0.0486−0.21630.17590.063*
C90.11938 (10)−0.1676 (3)0.30194 (16)0.0385 (6)
C100.03449 (11)0.5176 (3)0.4126 (2)0.0494 (7)
H10A−0.00490.51040.39150.059*
C110.06748 (12)0.6067 (3)0.4870 (2)0.0539 (7)
H11A0.05110.65760.51660.065*
C120.12519 (12)0.6190 (3)0.5169 (2)0.0526 (7)
H12A0.14850.67990.56670.063*
C130.14864 (11)0.5405 (3)0.47287 (18)0.0456 (6)
H13A0.18780.54790.49240.055*
C140.11277 (9)0.4506 (2)0.39904 (16)0.0336 (5)
C150.13512 (9)0.3589 (3)0.35035 (16)0.0339 (5)
C160.19346 (11)0.3488 (3)0.3800 (2)0.0542 (7)
H16A0.22030.40340.43070.065*
C170.21161 (12)0.2577 (3)0.3340 (2)0.0634 (9)
H17A0.25080.24960.35370.076*
C180.17124 (11)0.1788 (3)0.2589 (2)0.0525 (7)
H18A0.18240.11660.22660.063*
C190.11432 (11)0.1940 (3)0.23272 (18)0.0454 (7)
H19A0.08690.14100.18170.055*
N10.19912 (8)−0.1097 (2)0.44392 (15)0.0478 (5)
N20.10299 (9)−0.0851 (2)0.35415 (14)0.0410 (5)
N30.05612 (8)0.4404 (2)0.36884 (14)0.0390 (5)
N40.09607 (8)0.2814 (2)0.27686 (14)0.0360 (5)
O10.01181 (8)0.2029 (2)0.46217 (13)0.0559 (5)
O20.02068 (7)0.08785 (18)0.35135 (11)0.0422 (4)
H2C0.0731 (11)−0.046 (3)0.3391 (17)0.040 (7)*
U11U22U33U12U13U23
Cd10.02273 (14)0.04258 (17)0.03763 (15)0.0000.01272 (11)0.000
S10.0323 (3)0.0634 (5)0.0415 (4)0.0011 (3)0.0120 (3)−0.0134 (3)
C10.0281 (12)0.0453 (15)0.0395 (14)0.0012 (11)0.0178 (11)0.0034 (12)
C20.0437 (14)0.0473 (16)0.0351 (13)0.0069 (12)0.0211 (12)0.0061 (11)
C30.0293 (13)0.0463 (15)0.0354 (13)0.0004 (11)0.0123 (11)−0.0007 (11)
C40.0352 (13)0.0485 (16)0.0412 (14)0.0000 (11)0.0199 (12)0.0005 (12)
C50.0413 (16)0.067 (2)0.0592 (18)0.0054 (13)0.0293 (15)−0.0053 (15)
C60.0614 (19)0.0594 (19)0.0638 (19)0.0036 (15)0.0424 (17)−0.0084 (16)
C70.064 (2)0.0568 (19)0.0482 (17)−0.0032 (15)0.0289 (15)−0.0110 (14)
C80.0430 (16)0.0599 (18)0.0452 (16)0.0030 (13)0.0154 (13)−0.0044 (14)
C90.0357 (13)0.0404 (14)0.0376 (13)0.0031 (11)0.0170 (11)0.0038 (11)
C100.0418 (15)0.0446 (16)0.0701 (18)0.0026 (12)0.0344 (14)−0.0066 (14)
C110.0633 (19)0.0424 (16)0.0722 (19)0.0020 (14)0.0462 (17)−0.0104 (15)
C120.0540 (17)0.0482 (17)0.0573 (17)−0.0067 (13)0.0293 (15)−0.0161 (14)
C130.0363 (14)0.0483 (16)0.0512 (15)−0.0059 (12)0.0213 (12)−0.0138 (13)
C140.0288 (12)0.0340 (13)0.0379 (13)0.0002 (10)0.0167 (11)0.0002 (10)
C150.0275 (12)0.0379 (14)0.0362 (13)−0.0033 (10)0.0160 (10)−0.0032 (11)
C160.0296 (13)0.070 (2)0.0594 (17)−0.0091 (13)0.0196 (13)−0.0281 (15)
C170.0293 (14)0.088 (2)0.073 (2)−0.0054 (14)0.0259 (15)−0.0318 (18)
C180.0393 (15)0.0666 (19)0.0589 (17)−0.0006 (13)0.0302 (14)−0.0177 (15)
C190.0373 (14)0.0567 (18)0.0443 (15)−0.0087 (12)0.0220 (12)−0.0163 (13)
N10.0295 (11)0.0618 (15)0.0459 (13)0.0042 (10)0.0144 (10)−0.0054 (11)
N20.0281 (11)0.0496 (14)0.0393 (12)0.0059 (10)0.0126 (10)−0.0043 (10)
N30.0297 (11)0.0404 (12)0.0491 (12)0.0008 (9)0.0215 (10)−0.0055 (10)
N40.0267 (10)0.0443 (12)0.0366 (11)−0.0027 (9)0.0156 (9)−0.0065 (9)
O10.0470 (11)0.0704 (14)0.0491 (11)0.0212 (10)0.0234 (9)−0.0027 (10)
O20.0393 (9)0.0521 (11)0.0332 (9)0.0121 (8)0.0168 (8)0.0054 (8)
Cd1—O2i2.2746 (16)C8—H8A0.9300
Cd1—O22.2746 (16)C9—N21.376 (3)
Cd1—N32.342 (2)C10—N31.336 (3)
Cd1—N3i2.3417 (19)C10—C111.369 (4)
Cd1—N4i2.3775 (19)C10—H10A0.9300
Cd1—N42.3775 (19)C11—C121.368 (4)
S1—C31.750 (2)C11—H11A0.9300
S1—C21.807 (2)C12—C131.381 (3)
C1—O11.221 (3)C12—H12A0.9300
C1—O21.284 (3)C13—C141.385 (3)
C1—C21.521 (3)C13—H13A0.9300
C2—H2A0.9700C14—N31.338 (3)
C2—H2B0.9700C14—C151.485 (3)
C3—N11.308 (3)C15—N41.340 (3)
C3—N21.357 (3)C15—C161.383 (3)
C4—C51.389 (4)C16—C171.375 (4)
C4—N11.398 (3)C16—H16A0.9300
C4—C91.398 (3)C17—C181.373 (4)
C5—C61.381 (4)C17—H17A0.9300
C5—H5A0.9300C18—C191.364 (3)
C6—C71.385 (4)C18—H18A0.9300
C6—H6A0.9300C19—N41.335 (3)
C7—C81.378 (4)C19—H19A0.9300
C7—H7A0.9300N2—H2C0.80 (2)
C8—C91.383 (4)
O2i—Cd1—O280.25 (8)N2—C9—C4105.0 (2)
O2i—Cd1—N3158.50 (6)C8—C9—C4122.5 (2)
O2—Cd1—N394.35 (7)N3—C10—C11123.2 (2)
O2i—Cd1—N3i94.35 (7)N3—C10—H10A118.4
O2—Cd1—N3i158.50 (6)C11—C10—H10A118.4
N3—Cd1—N3i97.71 (10)C12—C11—C10118.3 (2)
O2i—Cd1—N4i92.44 (6)C12—C11—H11A120.9
O2—Cd1—N4i89.84 (6)C10—C11—H11A120.9
N3—Cd1—N4i108.43 (7)C11—C12—C13119.7 (3)
N3i—Cd1—N4i69.49 (6)C11—C12—H12A120.1
O2i—Cd1—N489.84 (6)C13—C12—H12A120.1
O2—Cd1—N492.44 (6)C12—C13—C14118.8 (2)
N3—Cd1—N469.49 (6)C12—C13—H13A120.6
N3i—Cd1—N4108.43 (7)C14—C13—H13A120.6
N4i—Cd1—N4177.01 (10)N3—C14—C13121.5 (2)
C3—S1—C2103.15 (12)N3—C14—C15116.5 (2)
O1—C1—O2125.2 (2)C13—C14—C15122.0 (2)
O1—C1—C2118.9 (2)N4—C15—C16120.6 (2)
O2—C1—C2115.8 (2)N4—C15—C14116.84 (19)
C1—C2—S1114.25 (17)C16—C15—C14122.5 (2)
C1—C2—H2A108.7C17—C16—C15119.7 (2)
S1—C2—H2A108.7C17—C16—H16A120.1
C1—C2—H2B108.7C15—C16—H16A120.1
S1—C2—H2B108.7C18—C17—C16119.2 (3)
H2A—C2—H2B107.6C18—C17—H17A120.4
N1—C3—N2114.3 (2)C16—C17—H17A120.4
N1—C3—S1122.47 (18)C19—C18—C17118.3 (2)
N2—C3—S1123.23 (18)C19—C18—H18A120.8
C5—C4—N1130.0 (2)C17—C18—H18A120.8
C5—C4—C9119.7 (2)N4—C19—C18123.2 (2)
N1—C4—C9110.2 (2)N4—C19—H19A118.4
C6—C5—C4117.8 (3)C18—C19—H19A118.4
C6—C5—H5A121.1C3—N1—C4103.73 (19)
C4—C5—H5A121.1C3—N2—C9106.7 (2)
C5—C6—C7121.7 (3)C3—N2—H2C121.9 (18)
C5—C6—H6A119.1C9—N2—H2C130.3 (18)
C7—C6—H6A119.1C10—N3—C14118.6 (2)
C8—C7—C6121.5 (3)C10—N3—Cd1122.20 (16)
C8—C7—H7A119.3C14—N3—Cd1119.05 (15)
C6—C7—H7A119.3C19—N4—C15119.0 (2)
C7—C8—C9116.8 (3)C19—N4—Cd1122.67 (16)
C7—C8—H8A121.6C15—N4—Cd1117.36 (14)
C9—C8—H8A121.6C1—O2—Cd1119.90 (16)
N2—C9—C8132.4 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2C···O20.80 (2)1.96 (2)2.708 (3)156 (2)
C11—H11A···O1ii0.932.293.179 (3)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2C⋯O20.80 (2)1.96 (2)2.708 (3)156 (2)
C11—H11A⋯O1i0.932.293.179 (3)161

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[(1,10-phenanthroline)cadmium(II)]-μ-2-(1,3-benzimidazol-2-ylsulfan-yl)acetato-κN,O:N].

Authors:  Lin Cheng; Yan-Yan Sun; Ya-Wen Zhang; Jian-Quan Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-10
  2 in total

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