| Literature DB >> 21578110 |
Lin Cheng1, Yan-Yan Sun, Jian-Quan Wang, Ya-Wen Zhang.
Abstract
In the structure of the title compound, [Cd(C(9)H(7)N(2)O(2)S)(2)(C(10)H(8)N(2))(2)], the complex mol-ecules are located on a crystallographic twofold rotation axis and the Cd(II) ion is octa-hedrally coordinated by two chelating 2,2'-bipyridine ligands and two O atoms from the carboxyl-ate groups of two 2-(benzimidazol-2-ylsulfan-yl)acetate ligands. The two carboxyl-ate ligands adopt a cis configuration with respect to each other. Within each of these ligands, the imidazole fragments are bent back in a loop towards the acetyl groups, forming intra-molecular N-H⋯O hydrogen bonds, which help to stablilize the mononuclear complex. Adjacent mol-ecules are further linked by weak C-H⋯O hydrogen bonds, resulting in a chain along the c axis.Entities:
Year: 2009 PMID: 21578110 PMCID: PMC2971152 DOI: 10.1107/S1600536809039592
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(C9H7N2O2S)2(C10H8N2)2] | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 783 reflections |
| θ = 2.4–28.0° | |
| µ = 0.79 mm−1 | |
| β = 120.254 (1)° | Block, colorless |
| 0.20 × 0.18 × 0.12 mm | |
| Bruker SMART CCD diffractometer | 3460 independent reflections |
| Radiation source: fine-focus sealed tube | 2946 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 9308 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3460 reflections | (Δ/σ)max < 0.001 |
| 244 parameters | Δρmax = 0.33 e Å−3 |
| 0 restraints | Δρmin = −0.47 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cd1 | 0.0000 | 0.27478 (3) | 0.2500 | 0.03543 (10) | |
| S1 | 0.15271 (3) | 0.05110 (8) | 0.52528 (4) | 0.04872 (19) | |
| C1 | 0.03416 (10) | 0.1120 (3) | 0.43699 (17) | 0.0373 (6) | |
| C2 | 0.08216 (10) | 0.0184 (3) | 0.51125 (16) | 0.0415 (6) | |
| H2A | 0.0721 | −0.0817 | 0.4945 | 0.050* | |
| H2B | 0.0843 | 0.0346 | 0.5713 | 0.050* | |
| C3 | 0.15201 (10) | −0.0542 (3) | 0.43638 (16) | 0.0388 (6) | |
| C4 | 0.17937 (11) | −0.1829 (3) | 0.35876 (17) | 0.0413 (6) | |
| C5 | 0.20952 (13) | −0.2670 (3) | 0.3279 (2) | 0.0540 (7) | |
| H5A | 0.2493 | −0.2809 | 0.3653 | 0.065* | |
| C6 | 0.17850 (13) | −0.3294 (3) | 0.2399 (2) | 0.0567 (7) | |
| H6A | 0.1979 | −0.3860 | 0.2179 | 0.068* | |
| C7 | 0.11932 (13) | −0.3099 (3) | 0.1835 (2) | 0.0561 (8) | |
| H7A | 0.1000 | −0.3523 | 0.1242 | 0.067* | |
| C8 | 0.08838 (13) | −0.2290 (3) | 0.2134 (2) | 0.0524 (7) | |
| H8A | 0.0486 | −0.2163 | 0.1759 | 0.063* | |
| C9 | 0.11938 (10) | −0.1676 (3) | 0.30194 (16) | 0.0385 (6) | |
| C10 | 0.03449 (11) | 0.5176 (3) | 0.4126 (2) | 0.0494 (7) | |
| H10A | −0.0049 | 0.5104 | 0.3915 | 0.059* | |
| C11 | 0.06748 (12) | 0.6067 (3) | 0.4870 (2) | 0.0539 (7) | |
| H11A | 0.0511 | 0.6576 | 0.5166 | 0.065* | |
| C12 | 0.12519 (12) | 0.6190 (3) | 0.5169 (2) | 0.0526 (7) | |
| H12A | 0.1485 | 0.6799 | 0.5667 | 0.063* | |
| C13 | 0.14864 (11) | 0.5405 (3) | 0.47287 (18) | 0.0456 (6) | |
| H13A | 0.1878 | 0.5479 | 0.4924 | 0.055* | |
| C14 | 0.11277 (9) | 0.4506 (2) | 0.39904 (16) | 0.0336 (5) | |
| C15 | 0.13512 (9) | 0.3589 (3) | 0.35035 (16) | 0.0339 (5) | |
| C16 | 0.19346 (11) | 0.3488 (3) | 0.3800 (2) | 0.0542 (7) | |
| H16A | 0.2203 | 0.4034 | 0.4307 | 0.065* | |
| C17 | 0.21161 (12) | 0.2577 (3) | 0.3340 (2) | 0.0634 (9) | |
| H17A | 0.2508 | 0.2496 | 0.3537 | 0.076* | |
| C18 | 0.17124 (11) | 0.1788 (3) | 0.2589 (2) | 0.0525 (7) | |
| H18A | 0.1824 | 0.1166 | 0.2266 | 0.063* | |
| C19 | 0.11432 (11) | 0.1940 (3) | 0.23272 (18) | 0.0454 (7) | |
| H19A | 0.0869 | 0.1410 | 0.1817 | 0.055* | |
| N1 | 0.19912 (8) | −0.1097 (2) | 0.44392 (15) | 0.0478 (5) | |
| N2 | 0.10299 (9) | −0.0851 (2) | 0.35415 (14) | 0.0410 (5) | |
| N3 | 0.05612 (8) | 0.4404 (2) | 0.36884 (14) | 0.0390 (5) | |
| N4 | 0.09607 (8) | 0.2814 (2) | 0.27686 (14) | 0.0360 (5) | |
| O1 | 0.01181 (8) | 0.2029 (2) | 0.46217 (13) | 0.0559 (5) | |
| O2 | 0.02068 (7) | 0.08785 (18) | 0.35135 (11) | 0.0422 (4) | |
| H2C | 0.0731 (11) | −0.046 (3) | 0.3391 (17) | 0.040 (7)* |
| Cd1 | 0.02273 (14) | 0.04258 (17) | 0.03763 (15) | 0.000 | 0.01272 (11) | 0.000 |
| S1 | 0.0323 (3) | 0.0634 (5) | 0.0415 (4) | 0.0011 (3) | 0.0120 (3) | −0.0134 (3) |
| C1 | 0.0281 (12) | 0.0453 (15) | 0.0395 (14) | 0.0012 (11) | 0.0178 (11) | 0.0034 (12) |
| C2 | 0.0437 (14) | 0.0473 (16) | 0.0351 (13) | 0.0069 (12) | 0.0211 (12) | 0.0061 (11) |
| C3 | 0.0293 (13) | 0.0463 (15) | 0.0354 (13) | 0.0004 (11) | 0.0123 (11) | −0.0007 (11) |
| C4 | 0.0352 (13) | 0.0485 (16) | 0.0412 (14) | 0.0000 (11) | 0.0199 (12) | 0.0005 (12) |
| C5 | 0.0413 (16) | 0.067 (2) | 0.0592 (18) | 0.0054 (13) | 0.0293 (15) | −0.0053 (15) |
| C6 | 0.0614 (19) | 0.0594 (19) | 0.0638 (19) | 0.0036 (15) | 0.0424 (17) | −0.0084 (16) |
| C7 | 0.064 (2) | 0.0568 (19) | 0.0482 (17) | −0.0032 (15) | 0.0289 (15) | −0.0110 (14) |
| C8 | 0.0430 (16) | 0.0599 (18) | 0.0452 (16) | 0.0030 (13) | 0.0154 (13) | −0.0044 (14) |
| C9 | 0.0357 (13) | 0.0404 (14) | 0.0376 (13) | 0.0031 (11) | 0.0170 (11) | 0.0038 (11) |
| C10 | 0.0418 (15) | 0.0446 (16) | 0.0701 (18) | 0.0026 (12) | 0.0344 (14) | −0.0066 (14) |
| C11 | 0.0633 (19) | 0.0424 (16) | 0.0722 (19) | 0.0020 (14) | 0.0462 (17) | −0.0104 (15) |
| C12 | 0.0540 (17) | 0.0482 (17) | 0.0573 (17) | −0.0067 (13) | 0.0293 (15) | −0.0161 (14) |
| C13 | 0.0363 (14) | 0.0483 (16) | 0.0512 (15) | −0.0059 (12) | 0.0213 (12) | −0.0138 (13) |
| C14 | 0.0288 (12) | 0.0340 (13) | 0.0379 (13) | 0.0002 (10) | 0.0167 (11) | 0.0002 (10) |
| C15 | 0.0275 (12) | 0.0379 (14) | 0.0362 (13) | −0.0033 (10) | 0.0160 (10) | −0.0032 (11) |
| C16 | 0.0296 (13) | 0.070 (2) | 0.0594 (17) | −0.0091 (13) | 0.0196 (13) | −0.0281 (15) |
| C17 | 0.0293 (14) | 0.088 (2) | 0.073 (2) | −0.0054 (14) | 0.0259 (15) | −0.0318 (18) |
| C18 | 0.0393 (15) | 0.0666 (19) | 0.0589 (17) | −0.0006 (13) | 0.0302 (14) | −0.0177 (15) |
| C19 | 0.0373 (14) | 0.0567 (18) | 0.0443 (15) | −0.0087 (12) | 0.0220 (12) | −0.0163 (13) |
| N1 | 0.0295 (11) | 0.0618 (15) | 0.0459 (13) | 0.0042 (10) | 0.0144 (10) | −0.0054 (11) |
| N2 | 0.0281 (11) | 0.0496 (14) | 0.0393 (12) | 0.0059 (10) | 0.0126 (10) | −0.0043 (10) |
| N3 | 0.0297 (11) | 0.0404 (12) | 0.0491 (12) | 0.0008 (9) | 0.0215 (10) | −0.0055 (10) |
| N4 | 0.0267 (10) | 0.0443 (12) | 0.0366 (11) | −0.0027 (9) | 0.0156 (9) | −0.0065 (9) |
| O1 | 0.0470 (11) | 0.0704 (14) | 0.0491 (11) | 0.0212 (10) | 0.0234 (9) | −0.0027 (10) |
| O2 | 0.0393 (9) | 0.0521 (11) | 0.0332 (9) | 0.0121 (8) | 0.0168 (8) | 0.0054 (8) |
| Cd1—O2i | 2.2746 (16) | C8—H8A | 0.9300 |
| Cd1—O2 | 2.2746 (16) | C9—N2 | 1.376 (3) |
| Cd1—N3 | 2.342 (2) | C10—N3 | 1.336 (3) |
| Cd1—N3i | 2.3417 (19) | C10—C11 | 1.369 (4) |
| Cd1—N4i | 2.3775 (19) | C10—H10A | 0.9300 |
| Cd1—N4 | 2.3775 (19) | C11—C12 | 1.368 (4) |
| S1—C3 | 1.750 (2) | C11—H11A | 0.9300 |
| S1—C2 | 1.807 (2) | C12—C13 | 1.381 (3) |
| C1—O1 | 1.221 (3) | C12—H12A | 0.9300 |
| C1—O2 | 1.284 (3) | C13—C14 | 1.385 (3) |
| C1—C2 | 1.521 (3) | C13—H13A | 0.9300 |
| C2—H2A | 0.9700 | C14—N3 | 1.338 (3) |
| C2—H2B | 0.9700 | C14—C15 | 1.485 (3) |
| C3—N1 | 1.308 (3) | C15—N4 | 1.340 (3) |
| C3—N2 | 1.357 (3) | C15—C16 | 1.383 (3) |
| C4—C5 | 1.389 (4) | C16—C17 | 1.375 (4) |
| C4—N1 | 1.398 (3) | C16—H16A | 0.9300 |
| C4—C9 | 1.398 (3) | C17—C18 | 1.373 (4) |
| C5—C6 | 1.381 (4) | C17—H17A | 0.9300 |
| C5—H5A | 0.9300 | C18—C19 | 1.364 (3) |
| C6—C7 | 1.385 (4) | C18—H18A | 0.9300 |
| C6—H6A | 0.9300 | C19—N4 | 1.335 (3) |
| C7—C8 | 1.378 (4) | C19—H19A | 0.9300 |
| C7—H7A | 0.9300 | N2—H2C | 0.80 (2) |
| C8—C9 | 1.383 (4) | ||
| O2i—Cd1—O2 | 80.25 (8) | N2—C9—C4 | 105.0 (2) |
| O2i—Cd1—N3 | 158.50 (6) | C8—C9—C4 | 122.5 (2) |
| O2—Cd1—N3 | 94.35 (7) | N3—C10—C11 | 123.2 (2) |
| O2i—Cd1—N3i | 94.35 (7) | N3—C10—H10A | 118.4 |
| O2—Cd1—N3i | 158.50 (6) | C11—C10—H10A | 118.4 |
| N3—Cd1—N3i | 97.71 (10) | C12—C11—C10 | 118.3 (2) |
| O2i—Cd1—N4i | 92.44 (6) | C12—C11—H11A | 120.9 |
| O2—Cd1—N4i | 89.84 (6) | C10—C11—H11A | 120.9 |
| N3—Cd1—N4i | 108.43 (7) | C11—C12—C13 | 119.7 (3) |
| N3i—Cd1—N4i | 69.49 (6) | C11—C12—H12A | 120.1 |
| O2i—Cd1—N4 | 89.84 (6) | C13—C12—H12A | 120.1 |
| O2—Cd1—N4 | 92.44 (6) | C12—C13—C14 | 118.8 (2) |
| N3—Cd1—N4 | 69.49 (6) | C12—C13—H13A | 120.6 |
| N3i—Cd1—N4 | 108.43 (7) | C14—C13—H13A | 120.6 |
| N4i—Cd1—N4 | 177.01 (10) | N3—C14—C13 | 121.5 (2) |
| C3—S1—C2 | 103.15 (12) | N3—C14—C15 | 116.5 (2) |
| O1—C1—O2 | 125.2 (2) | C13—C14—C15 | 122.0 (2) |
| O1—C1—C2 | 118.9 (2) | N4—C15—C16 | 120.6 (2) |
| O2—C1—C2 | 115.8 (2) | N4—C15—C14 | 116.84 (19) |
| C1—C2—S1 | 114.25 (17) | C16—C15—C14 | 122.5 (2) |
| C1—C2—H2A | 108.7 | C17—C16—C15 | 119.7 (2) |
| S1—C2—H2A | 108.7 | C17—C16—H16A | 120.1 |
| C1—C2—H2B | 108.7 | C15—C16—H16A | 120.1 |
| S1—C2—H2B | 108.7 | C18—C17—C16 | 119.2 (3) |
| H2A—C2—H2B | 107.6 | C18—C17—H17A | 120.4 |
| N1—C3—N2 | 114.3 (2) | C16—C17—H17A | 120.4 |
| N1—C3—S1 | 122.47 (18) | C19—C18—C17 | 118.3 (2) |
| N2—C3—S1 | 123.23 (18) | C19—C18—H18A | 120.8 |
| C5—C4—N1 | 130.0 (2) | C17—C18—H18A | 120.8 |
| C5—C4—C9 | 119.7 (2) | N4—C19—C18 | 123.2 (2) |
| N1—C4—C9 | 110.2 (2) | N4—C19—H19A | 118.4 |
| C6—C5—C4 | 117.8 (3) | C18—C19—H19A | 118.4 |
| C6—C5—H5A | 121.1 | C3—N1—C4 | 103.73 (19) |
| C4—C5—H5A | 121.1 | C3—N2—C9 | 106.7 (2) |
| C5—C6—C7 | 121.7 (3) | C3—N2—H2C | 121.9 (18) |
| C5—C6—H6A | 119.1 | C9—N2—H2C | 130.3 (18) |
| C7—C6—H6A | 119.1 | C10—N3—C14 | 118.6 (2) |
| C8—C7—C6 | 121.5 (3) | C10—N3—Cd1 | 122.20 (16) |
| C8—C7—H7A | 119.3 | C14—N3—Cd1 | 119.05 (15) |
| C6—C7—H7A | 119.3 | C19—N4—C15 | 119.0 (2) |
| C7—C8—C9 | 116.8 (3) | C19—N4—Cd1 | 122.67 (16) |
| C7—C8—H8A | 121.6 | C15—N4—Cd1 | 117.36 (14) |
| C9—C8—H8A | 121.6 | C1—O2—Cd1 | 119.90 (16) |
| N2—C9—C8 | 132.4 (2) |
| H··· | ||||
| N2—H2C···O2 | 0.80 (2) | 1.96 (2) | 2.708 (3) | 156 (2) |
| C11—H11A···O1ii | 0.93 | 2.29 | 3.179 (3) | 161 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.80 (2) | 1.96 (2) | 2.708 (3) | 156 (2) |
| C11—H11 | 0.93 | 2.29 | 3.179 (3) | 161 |
Symmetry code: (i) .