Literature DB >> 21578104

Aqua-[2-(2-pyridylmethyl-imino-meth-yl)phenolato]nickel(II) nitrate monohydrate.

Ning Sheng1.   

Abstract

In the title compound, [Ni(C(13)H(11)N(2)O)(H(2)O)]NO(3)·H(2)O, the Ni(II) ion is coordinated by one O atom and two N atoms of the Schiff base ligand and the O atom from a water mol-ecule, forming a slightly distorted square-planar geometry. A one-dimensional double-chain structure is formed along [001] by O⋯H-O hydrogen bonds and the Ni⋯O [2.617 (3) Å] inter-actions.

Entities:  

Year:  2009        PMID: 21578104      PMCID: PMC2971029          DOI: 10.1107/S1600536809037027

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff bases in coordination chemistry, see: Boskovic et al. (2003 ▶); Koizumi et al. (2005 ▶); Oshiob et al. (2005 ▶). For Ni—O and Ni—N bond distances in related structures, see: Wang et al. (2007 ▶).

Experimental

Crystal data

[Ni(C13n class="Species">H11N2O)(H2O)]NO3·H2O M = 367.99 Triclinic, a = 7.7885 (13) Å b = 9.0155 (15) Å c = 11.3285 (19) Å α = 71.244 (2)° β = 85.846 (3)° γ = 86.967 (3)° V = 750.9 (2) Å3 Z = 2 Mo Kα radiation μ = 1.33 mm−1 T = 293 K 0.27 × 0.21 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.716, T max = 0.826 3706 measured reflections 2610 independent reflections 2179 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.086 S = 1.04 2610 reflections 208 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAIn class="Chemical">NT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 1998 ▶); software used to prepare material for publication: XP. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809037027/hg2552sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809037027/hg2552Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C13H11N2O)(H2O)]NO3·H2OZ = 2
Mr = 367.99F(000) = 380
Triclinic, P1Dx = 1.628 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7885 (13) ÅCell parameters from 1525 reflections
b = 9.0155 (15) Åθ = 2.5–25.8°
c = 11.3285 (19) ŵ = 1.33 mm1
α = 71.244 (2)°T = 293 K
β = 85.846 (3)°Block, red-brown
γ = 86.967 (3)°0.27 × 0.21 × 0.15 mm
V = 750.9 (2) Å3
Bruker APEXII CCD area-detector diffractometer2610 independent reflections
Radiation source: fine-focus sealed tube2179 reflections with I > 2σ(I)
graphiteRint = 0.015
φ and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −9→9
Tmin = 0.716, Tmax = 0.826k = −7→10
3706 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0417P)2 + 0.2147P] where P = (Fo2 + 2Fc2)/3
2610 reflections(Δ/σ)max = 0.001
208 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.65546 (5)0.59075 (4)0.61677 (3)0.03862 (14)
O10.6180 (3)0.7356 (2)0.45717 (19)0.0534 (5)
O20.5125 (3)0.7279 (2)0.69276 (19)0.0502 (5)
H2A0.45120.79090.64140.060*
H2B0.57640.77740.72150.060*
O31.0146 (3)0.9237 (3)0.7257 (3)0.0827 (8)
O40.7495 (3)0.8666 (3)0.7775 (2)0.0646 (6)
O50.8974 (3)0.7562 (3)0.6573 (3)0.0743 (7)
O60.2993 (3)0.9471 (2)0.5530 (2)0.0651 (6)
H6B0.21350.93220.60160.078*
H6A0.33201.03750.53700.078*
N10.7643 (3)0.4328 (3)0.5523 (2)0.0427 (6)
N20.7069 (3)0.4333 (3)0.7799 (2)0.0455 (6)
N30.8871 (4)0.8476 (3)0.7206 (2)0.0550 (7)
C10.7858 (4)0.2991 (3)0.7729 (3)0.0437 (7)
C20.8364 (4)0.1813 (4)0.8778 (3)0.0586 (9)
H20.89020.08970.87070.070*
C30.8059 (5)0.2014 (4)0.9927 (3)0.0642 (9)
H30.83970.12391.06460.077*
C40.7247 (5)0.3378 (4)1.0002 (3)0.0626 (9)
H40.70270.35341.07710.075*
C50.6771 (4)0.4494 (4)0.8938 (3)0.0583 (8)
H50.62150.54070.89990.070*
C60.8153 (4)0.2851 (3)0.6448 (3)0.0511 (8)
H6C0.93610.26080.62960.061*
H6D0.74830.20080.63810.061*
C70.7468 (4)0.5799 (3)0.3335 (3)0.0461 (7)
C80.6592 (4)0.7162 (3)0.3475 (3)0.0452 (7)
C90.6142 (4)0.8354 (4)0.2387 (3)0.0588 (9)
H90.55500.92500.24530.071*
C100.6560 (5)0.8222 (4)0.1225 (3)0.0629 (9)
H100.62350.90250.05190.075*
C110.7465 (5)0.6902 (4)0.1084 (3)0.0643 (9)
H110.77640.68330.02930.077*
C120.7902 (4)0.5718 (4)0.2126 (3)0.0575 (8)
H120.85000.48360.20370.069*
C130.7934 (4)0.4472 (3)0.4359 (3)0.0457 (7)
H130.85010.36360.41690.055*
U11U22U33U12U13U23
Ni10.0453 (2)0.0280 (2)0.0426 (2)0.00371 (14)0.00055 (15)−0.01290 (15)
O10.0696 (14)0.0374 (11)0.0513 (13)0.0101 (10)−0.0023 (11)−0.0135 (10)
O20.0555 (12)0.0402 (11)0.0564 (13)0.0045 (9)−0.0031 (10)−0.0186 (10)
O30.0580 (16)0.108 (2)0.097 (2)−0.0215 (15)−0.0002 (14)−0.0517 (18)
O40.0579 (14)0.0783 (17)0.0680 (15)−0.0067 (12)0.0113 (12)−0.0402 (14)
O50.0684 (16)0.0642 (15)0.104 (2)0.0061 (12)0.0087 (14)−0.0506 (16)
O60.0666 (15)0.0451 (13)0.0814 (17)0.0045 (11)0.0029 (13)−0.0196 (12)
N10.0493 (14)0.0332 (12)0.0459 (14)0.0027 (10)−0.0025 (11)−0.0138 (11)
N20.0533 (15)0.0344 (13)0.0489 (15)−0.0009 (11)−0.0015 (11)−0.0140 (11)
N30.0629 (18)0.0470 (16)0.0534 (17)0.0057 (13)−0.0081 (14)−0.0137 (13)
C10.0502 (17)0.0327 (15)0.0477 (17)−0.0004 (12)−0.0062 (14)−0.0115 (13)
C20.077 (2)0.0391 (17)0.059 (2)0.0045 (16)−0.0157 (17)−0.0128 (16)
C30.089 (3)0.0478 (19)0.052 (2)−0.0025 (18)−0.0216 (18)−0.0066 (16)
C40.086 (3)0.056 (2)0.0450 (19)−0.0036 (18)−0.0088 (17)−0.0147 (17)
C50.075 (2)0.0503 (19)0.051 (2)0.0010 (16)0.0011 (17)−0.0200 (16)
C60.065 (2)0.0321 (15)0.0563 (19)0.0097 (14)−0.0091 (16)−0.0153 (14)
C70.0525 (18)0.0422 (17)0.0462 (17)−0.0014 (14)−0.0051 (14)−0.0174 (14)
C80.0491 (17)0.0373 (16)0.0490 (18)−0.0039 (13)−0.0041 (14)−0.0126 (14)
C90.071 (2)0.0417 (18)0.060 (2)−0.0040 (16)−0.0066 (17)−0.0100 (16)
C100.082 (2)0.054 (2)0.046 (2)−0.0157 (18)−0.0108 (17)−0.0043 (16)
C110.082 (3)0.067 (2)0.047 (2)−0.0143 (19)−0.0020 (17)−0.0204 (18)
C120.064 (2)0.060 (2)0.054 (2)−0.0020 (16)−0.0017 (16)−0.0248 (17)
C130.0476 (17)0.0392 (16)0.0542 (19)0.0031 (13)−0.0008 (14)−0.0215 (14)
Ni1—O11.891 (2)C3—C41.377 (5)
Ni1—N11.931 (2)C3—H30.9300
Ni1—O21.9777 (19)C4—C51.359 (4)
Ni1—N21.987 (2)C4—H40.9300
O1—C81.324 (3)C5—H50.9300
O2—H2A0.8290C6—H6C0.9700
O2—H2B0.8324C6—H6D0.9700
O3—N31.251 (3)C7—C121.411 (4)
O4—N31.243 (3)C7—C81.422 (4)
O5—N31.251 (3)C7—C131.425 (4)
O6—H6B0.8225C8—C91.402 (4)
O6—H6A0.8261C9—C101.374 (5)
N1—C131.287 (4)C9—H90.9300
N1—C61.462 (4)C10—C111.399 (5)
N2—C51.347 (4)C10—H100.9300
N2—C11.350 (4)C11—C121.363 (5)
C1—C21.381 (4)C11—H110.9300
C1—C61.497 (4)C12—H120.9300
C2—C31.374 (5)C13—H130.9300
C2—H20.9300
O1—Ni1—N194.39 (9)C3—C4—H4120.3
O1—Ni1—O289.12 (8)N2—C5—C4122.8 (3)
N1—Ni1—O2170.48 (9)N2—C5—H5118.6
O1—Ni1—N2176.56 (9)C4—C5—H5118.6
N1—Ni1—N282.56 (10)N1—C6—C1109.4 (2)
O2—Ni1—N294.14 (9)N1—C6—H6C109.8
C8—O1—Ni1127.20 (18)C1—C6—H6C109.8
Ni1—O2—H2A111.9N1—C6—H6D109.8
Ni1—O2—H2B109.2C1—C6—H6D109.8
H2A—O2—H2B109.2H6C—C6—H6D108.2
H6B—O6—H6A110.5C12—C7—C8119.4 (3)
C13—N1—C6118.2 (2)C12—C7—C13116.9 (3)
C13—N1—Ni1125.4 (2)C8—C7—C13123.6 (3)
C6—N1—Ni1116.37 (18)O1—C8—C9118.8 (3)
C5—N2—C1117.8 (3)O1—C8—C7123.5 (3)
C5—N2—Ni1127.0 (2)C9—C8—C7117.7 (3)
C1—N2—Ni1115.2 (2)C10—C9—C8121.2 (3)
O4—N3—O5120.7 (3)C10—C9—H9119.4
O4—N3—O3118.9 (3)C8—C9—H9119.4
O5—N3—O3120.4 (3)C9—C10—C11121.2 (3)
N2—C1—C2122.1 (3)C9—C10—H10119.4
N2—C1—C6116.1 (2)C11—C10—H10119.4
C2—C1—C6121.8 (3)C12—C11—C10118.8 (3)
C3—C2—C1119.0 (3)C12—C11—H11120.6
C3—C2—H2120.5C10—C11—H11120.6
C1—C2—H2120.5C11—C12—C7121.6 (3)
C2—C3—C4119.1 (3)C11—C12—H12119.2
C2—C3—H3120.5C7—C12—H12119.2
C4—C3—H3120.5N1—C13—C7125.9 (3)
C5—C4—C3119.3 (3)N1—C13—H13117.1
C5—C4—H4120.3C7—C13—H13117.1
D—H···AD—HH···AD···AD—H···A
O6—H6A···O1i0.832.122.930 (3)165
O6—H6B···O3ii0.822.002.819 (3)172
O2—H2B···O50.832.573.009 (3)114
O2—H2B···N30.832.533.234 (4)143
O2—H2B···O40.831.852.677 (3)170
O2—H2A···O60.831.862.681 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6A⋯O1i0.832.122.930 (3)165
O6—H6B⋯O3ii0.822.002.819 (3)172
O2—H2B⋯O50.832.573.009 (3)114
O2—H2B⋯N30.832.533.234 (4)143
O2—H2B⋯O40.831.852.677 (3)170
O2—H2A⋯O60.831.862.681 (3)168

Symmetry codes: (i) ; (ii) .

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