Literature DB >> 21577998

N-{4-[3-(4-Fluoro-phen-yl)pyrido[2,3-b]pyrazin-2-yl]-2-pyrid-yl}isopropyl-amine.

Pierre Koch, Dieter Schollmeyer, Stefan Laufer.   

Abstract

In the crystal structure of the title compound, C(21)H(18)FN(5), the pyridopyrazine ring system forms dihedral angles of 33.27 (7) and 48.69 (9)° with the 4-fluoro-phenyl and pyridine ring, respectively. The dihedral angle of the 4-fluoro-phenyl and pyridine rings is 57.45 (8)°. The crystal packing is characterized by an inter-molecular N-H⋯N hydrogen bond.

Entities:  

Year:  2009        PMID: 21577998      PMCID: PMC2970374          DOI: 10.1107/S1600536809038173

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of pyridopyrazines under microwave conditions, see: Zhao et al. (2004 ▶)

Experimental

Crystal data

C21H18FN5 M = 359.40 Monoclinic, a = 12.042 (1) Å b = 7.6586 (2) Å c = 20.095 (2) Å β = 100.215 (5)° V = 1823.8 (3) Å3 Z = 4 Cu Kα radiation μ = 0.72 mm−1 T = 193 K 0.50 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971 ▶) T min = 0.743, T max = 0.998 3578 measured reflections 3468 independent reflections 2912 reflections with I > 2σ(I) R int = 0.063 3 standard reflections frequency: 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.127 S = 1.05 3468 reflections 247 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809038173/im2142sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809038173/im2142Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H18FN5F(000) = 752
Mr = 359.40Dx = 1.309 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 12.042 (1) Åθ = 60–69°
b = 7.6586 (2) ŵ = 0.72 mm1
c = 20.095 (2) ÅT = 193 K
β = 100.215 (5)°Plate, yellow
V = 1823.8 (3) Å30.50 × 0.20 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer2912 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.063
graphiteθmax = 70.2°, θmin = 3.7°
ω/2θ scansh = −14→14
Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971)k = −9→0
Tmin = 0.743, Tmax = 0.998l = 0→24
3578 measured reflections3 standard reflections every 60 min
3468 independent reflections intensity decay: 2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.127w = 1/[σ2(Fo2) + (0.065P)2 + 0.5513P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
3468 reflectionsΔρmax = 0.29 e Å3
247 parametersΔρmin = −0.28 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0038 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.34953 (12)0.36820 (19)0.45738 (6)0.0682 (4)
N10.47943 (11)0.38937 (19)0.08886 (7)0.0343 (3)
C20.43429 (13)0.4033 (2)0.14386 (8)0.0292 (3)
C30.50235 (12)0.38498 (19)0.21015 (8)0.0278 (3)
N40.61263 (11)0.36734 (17)0.21777 (7)0.0315 (3)
C50.66035 (13)0.3611 (2)0.16141 (8)0.0319 (4)
N60.77471 (11)0.3488 (2)0.17218 (8)0.0412 (4)
C70.82147 (15)0.3384 (3)0.11753 (10)0.0463 (5)
H70.90140.33150.12370.056*
C80.76109 (16)0.3370 (3)0.05108 (10)0.0508 (5)
H80.79980.32580.01400.061*
C90.64671 (16)0.3516 (3)0.04001 (9)0.0470 (5)
H90.60420.3522−0.00460.056*
C100.59296 (14)0.3660 (2)0.09677 (8)0.0336 (4)
C110.31151 (12)0.4444 (2)0.13098 (7)0.0287 (3)
C120.23734 (13)0.3532 (2)0.08126 (8)0.0349 (4)
H120.26280.25710.05810.042*
C130.12700 (13)0.4069 (2)0.06713 (8)0.0370 (4)
H130.07720.34420.03360.044*
N140.08393 (10)0.54181 (18)0.09720 (7)0.0345 (3)
C150.15497 (13)0.6273 (2)0.14529 (8)0.0307 (3)
C160.26989 (12)0.5820 (2)0.16339 (8)0.0299 (3)
H160.31810.64560.19750.036*
N170.11431 (11)0.76489 (19)0.17634 (7)0.0382 (4)
H170.15870.81530.21290.046*
C18−0.00040 (14)0.8299 (2)0.15770 (9)0.0393 (4)
H18−0.05310.72790.15130.047*
C19−0.02796 (18)0.9414 (3)0.21535 (11)0.0545 (5)
H19A−0.02580.86870.25570.082*
H19B−0.10350.99170.20220.082*
H19C0.02761.03560.22520.082*
C20−0.0150 (2)0.9323 (3)0.09207 (11)0.0610 (6)
H20A0.03071.03880.09890.091*
H20B−0.09470.96360.07800.091*
H20C0.00940.86070.05690.091*
C210.45692 (13)0.3816 (2)0.27448 (8)0.0295 (3)
C220.52397 (14)0.4499 (2)0.33258 (8)0.0355 (4)
H220.59530.49940.32960.043*
C230.48813 (17)0.4467 (2)0.39438 (9)0.0439 (4)
H230.53300.49550.43370.053*
C240.38569 (17)0.3708 (3)0.39702 (9)0.0441 (4)
C250.31854 (15)0.2973 (2)0.34194 (9)0.0410 (4)
H250.24910.24330.34600.049*
C260.35451 (14)0.3039 (2)0.28003 (8)0.0342 (4)
H260.30880.25490.24110.041*
U11U22U33U12U13U23
F10.0892 (9)0.0835 (9)0.0395 (6)−0.0090 (7)0.0321 (6)0.0019 (6)
N10.0320 (7)0.0395 (8)0.0321 (7)0.0079 (6)0.0075 (5)0.0045 (6)
C20.0298 (8)0.0263 (7)0.0321 (8)0.0022 (6)0.0070 (6)0.0014 (6)
C30.0282 (7)0.0230 (7)0.0322 (8)0.0009 (6)0.0054 (6)0.0008 (6)
N40.0285 (7)0.0311 (7)0.0348 (7)0.0033 (5)0.0053 (5)0.0024 (5)
C50.0292 (8)0.0277 (8)0.0399 (9)0.0037 (6)0.0091 (6)0.0051 (6)
N60.0275 (7)0.0448 (9)0.0524 (9)0.0048 (6)0.0103 (6)0.0048 (7)
C70.0305 (8)0.0486 (11)0.0634 (12)0.0084 (8)0.0181 (8)0.0125 (9)
C80.0460 (10)0.0590 (12)0.0540 (11)0.0162 (9)0.0273 (9)0.0193 (9)
C90.0438 (10)0.0610 (12)0.0395 (9)0.0169 (9)0.0164 (8)0.0154 (9)
C100.0324 (8)0.0325 (8)0.0373 (8)0.0085 (6)0.0101 (6)0.0074 (7)
C110.0279 (7)0.0302 (8)0.0285 (7)0.0022 (6)0.0066 (6)0.0025 (6)
C120.0333 (8)0.0360 (9)0.0363 (8)0.0011 (7)0.0085 (6)−0.0077 (7)
C130.0306 (8)0.0409 (9)0.0386 (9)−0.0044 (7)0.0037 (7)−0.0099 (7)
N140.0259 (6)0.0389 (8)0.0383 (7)0.0003 (5)0.0045 (5)−0.0038 (6)
C150.0288 (7)0.0327 (8)0.0311 (7)0.0017 (6)0.0073 (6)0.0008 (6)
C160.0276 (7)0.0307 (8)0.0305 (7)0.0006 (6)0.0026 (6)−0.0011 (6)
N170.0308 (7)0.0410 (8)0.0409 (8)0.0088 (6)0.0018 (6)−0.0093 (6)
C180.0299 (8)0.0371 (9)0.0503 (10)0.0077 (7)0.0057 (7)−0.0037 (8)
C190.0490 (11)0.0553 (12)0.0597 (12)0.0199 (9)0.0104 (9)−0.0105 (10)
C200.0668 (14)0.0562 (13)0.0567 (13)0.0236 (11)0.0025 (10)0.0048 (10)
C210.0318 (8)0.0264 (8)0.0306 (8)0.0049 (6)0.0068 (6)0.0033 (6)
C220.0389 (9)0.0327 (8)0.0344 (8)−0.0004 (7)0.0051 (7)0.0014 (7)
C230.0570 (11)0.0424 (10)0.0310 (8)−0.0020 (8)0.0044 (8)−0.0006 (7)
C240.0588 (11)0.0448 (10)0.0323 (9)0.0049 (9)0.0183 (8)0.0058 (7)
C250.0415 (9)0.0400 (9)0.0446 (10)0.0005 (8)0.0163 (7)0.0077 (8)
C260.0351 (8)0.0320 (8)0.0360 (8)0.0019 (7)0.0076 (6)0.0015 (7)
F1—C241.3595 (19)C15—N171.359 (2)
N1—C21.3197 (19)C15—C161.410 (2)
N1—C101.360 (2)C16—H160.9500
C2—C31.442 (2)N17—C181.454 (2)
C2—C111.489 (2)N17—H170.9144
C3—N41.3165 (19)C18—C201.518 (3)
C3—C211.491 (2)C18—C191.523 (2)
N4—C51.359 (2)C18—H181.0000
C5—N61.359 (2)C19—H19A0.9800
C5—C101.405 (2)C19—H19B0.9800
N6—C71.322 (2)C19—H19C0.9800
C7—C81.403 (3)C20—H20A0.9800
C7—H70.9500C20—H20B0.9800
C8—C91.360 (3)C20—H20C0.9800
C8—H80.9500C21—C261.391 (2)
C9—C101.412 (2)C21—C221.398 (2)
C9—H90.9500C22—C231.385 (2)
C11—C161.379 (2)C22—H220.9500
C11—C121.403 (2)C23—C241.373 (3)
C12—C131.372 (2)C23—H230.9500
C12—H120.9500C24—C251.370 (3)
C13—N141.346 (2)C25—C261.389 (2)
C13—H130.9500C25—H250.9500
N14—C151.342 (2)C26—H260.9500
C2—N1—C10117.88 (13)C15—N17—C18123.40 (14)
N1—C2—C3120.98 (14)C15—N17—H17119.3
N1—C2—C11114.55 (13)C18—N17—H17117.2
C3—C2—C11124.44 (13)N17—C18—C20111.07 (15)
N4—C3—C2120.92 (14)N17—C18—C19108.76 (15)
N4—C3—C21114.53 (13)C20—C18—C19111.33 (16)
C2—C3—C21124.54 (13)N17—C18—H18108.5
C3—N4—C5118.27 (13)C20—C18—H18108.5
N4—C5—N6115.86 (14)C19—C18—H18108.5
N4—C5—C10120.63 (14)C18—C19—H19A109.5
N6—C5—C10123.51 (15)C18—C19—H19B109.5
C7—N6—C5116.14 (15)H19A—C19—H19B109.5
N6—C7—C8124.47 (16)C18—C19—H19C109.5
N6—C7—H7117.8H19A—C19—H19C109.5
C8—C7—H7117.8H19B—C19—H19C109.5
C9—C8—C7119.59 (17)C18—C20—H20A109.5
C9—C8—H8120.2C18—C20—H20B109.5
C7—C8—H8120.2H20A—C20—H20B109.5
C8—C9—C10118.05 (17)C18—C20—H20C109.5
C8—C9—H9121.0H20A—C20—H20C109.5
C10—C9—H9121.0H20B—C20—H20C109.5
N1—C10—C5121.04 (14)C26—C21—C22118.82 (15)
N1—C10—C9120.74 (15)C26—C21—C3122.93 (14)
C5—C10—C9118.19 (15)C22—C21—C3118.12 (14)
C16—C11—C12118.58 (14)C23—C22—C21121.09 (16)
C16—C11—C2120.82 (14)C23—C22—H22119.5
C12—C11—C2120.37 (14)C21—C22—H22119.5
C13—C12—C11117.96 (15)C24—C23—C22117.83 (16)
C13—C12—H12121.0C24—C23—H23121.1
C11—C12—H12121.0C22—C23—H23121.1
N14—C13—C12124.99 (15)F1—C24—C25118.57 (17)
N14—C13—H13117.5F1—C24—C23118.20 (17)
C12—C13—H13117.5C25—C24—C23123.23 (16)
C15—N14—C13116.76 (13)C24—C25—C26118.40 (16)
N14—C15—N17118.24 (14)C24—C25—H25120.8
N14—C15—C16122.48 (14)C26—C25—H25120.8
N17—C15—C16119.27 (14)C25—C26—C21120.58 (16)
C11—C16—C15119.22 (14)C25—C26—H26119.7
C11—C16—H16120.4C21—C26—H26119.7
C15—C16—H16120.4
C10—N1—C2—C3−3.3 (2)C2—C11—C12—C13−174.10 (15)
C10—N1—C2—C11174.81 (14)C11—C12—C13—N140.3 (3)
N1—C2—C3—N45.3 (2)C12—C13—N14—C15−1.1 (3)
C11—C2—C3—N4−172.55 (14)C13—N14—C15—N17179.56 (15)
N1—C2—C3—C21−173.81 (14)C13—N14—C15—C161.1 (2)
C11—C2—C3—C218.3 (2)C12—C11—C16—C15−0.5 (2)
C2—C3—N4—C5−2.1 (2)C2—C11—C16—C15174.11 (14)
C21—C3—N4—C5177.08 (13)N14—C15—C16—C11−0.4 (2)
C3—N4—C5—N6177.84 (14)N17—C15—C16—C11−178.81 (15)
C3—N4—C5—C10−2.6 (2)N14—C15—N17—C18−3.3 (2)
N4—C5—N6—C7178.44 (16)C16—C15—N17—C18175.18 (15)
C10—C5—N6—C7−1.1 (2)C15—N17—C18—C20−75.1 (2)
C5—N6—C7—C8−0.9 (3)C15—N17—C18—C19162.02 (17)
N6—C7—C8—C91.8 (3)N4—C3—C21—C26−143.17 (15)
C7—C8—C9—C10−0.7 (3)C2—C3—C21—C2636.0 (2)
C2—N1—C10—C5−1.5 (2)N4—C3—C21—C2232.6 (2)
C2—N1—C10—C9−179.42 (16)C2—C3—C21—C22−148.19 (15)
N4—C5—C10—N14.7 (2)C26—C21—C22—C23−2.3 (2)
N6—C5—C10—N1−175.85 (15)C3—C21—C22—C23−178.29 (15)
N4—C5—C10—C9−177.38 (16)C21—C22—C23—C241.4 (3)
N6—C5—C10—C92.1 (3)C22—C23—C24—F1−179.53 (16)
C8—C9—C10—N1176.83 (18)C22—C23—C24—C250.6 (3)
C8—C9—C10—C5−1.1 (3)F1—C24—C25—C26178.49 (16)
N1—C2—C11—C16−128.17 (16)C23—C24—C25—C26−1.7 (3)
C3—C2—C11—C1649.8 (2)C24—C25—C26—C210.7 (3)
N1—C2—C11—C1246.3 (2)C22—C21—C26—C251.2 (2)
C3—C2—C11—C12−135.71 (16)C3—C21—C26—C25177.00 (15)
C16—C11—C12—C130.5 (2)
D—H···AD—HH···AD···AD—H···A
N17—H17···N6i0.912.323.166 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N17—H17⋯N6i0.912.323.166 (2)154

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  2 in total
  1 in total

1.  Crystal structures of 2,3-bis-(thio-phen-2-yl)pyrido[2,3-b]pyrazine and 7-bromo-2,3-bis-(thio-phen-2-yl)pyrido[2,3-b]pyrazine.

Authors:  Rafal Popek; Guy Crundwell
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-01-01
  1 in total

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