| Literature DB >> 21577970 |
Andrii V Tarasov, Tatyana A Volovnenko, Noël Lugan, Yulian M Volovenko.
Abstract
In the title compound, C(16)H(10)N(4)O, both the meth-oxy and nitrile substituents lie in the plane defined by the benzo[g]imidazo[1,2-a]-1,8-naphthyridine ring system, resulting in a nearly planar geometry for the entire mol-ecule (r.m.s. deviation of the non-H atoms from the mean plane is 0.044 Å). In the solid-state, the mol-ecules form a three-dimensional polymer through inter-molecular C-H⋯N and C-H⋯O hydrogen bonds. In addition, the packing mode results in stabilizing π-π stacking inter-actions between the asymmetric units.Entities:
Year: 2009 PMID: 21577970 PMCID: PMC2970372 DOI: 10.1107/S1600536809037544
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H10N4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9999 reflections |
| θ = 2.7–34.9° | |
| µ = 0.10 mm−1 | |
| β = 93.55 (3)° | Block, brown |
| 0.40 × 0.40 × 0.35 mm | |
| Bruker APEXII diffractometer | 3532 independent reflections |
| Radiation source: sealed tube | 2507 reflections with |
| graphite | |
| φ scans | θmax = 29.8°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 45253 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3532 reflections | (Δ/σ)max < 0.001 |
| 191 parameters | Δρmax = 0.33 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
| 0 constraints |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.1160 (2) | 0.16186 (14) | 0.60289 (12) | 0.0239 (3) | |
| C2 | 0.0449 (2) | 0.22693 (14) | 0.51977 (13) | 0.0257 (3) | |
| C3 | 0.0661 (2) | 0.19331 (15) | 0.42439 (13) | 0.0264 (4) | |
| H3 | 0.0201 | 0.2358 | 0.3708 | 0.032* | |
| C4 | 0.1593 (2) | 0.09249 (14) | 0.40567 (12) | 0.0239 (3) | |
| C5 | 0.1800 (2) | 0.05231 (15) | 0.31021 (13) | 0.0271 (4) | |
| H5 | 0.1352 | 0.0921 | 0.2546 | 0.033* | |
| C6 | 0.2686 (2) | −0.04838 (15) | 0.29677 (12) | 0.0262 (4) | |
| C7 | 0.2865 (3) | −0.09560 (17) | 0.20044 (13) | 0.0339 (4) | |
| H7 | 0.2407 | −0.0588 | 0.1433 | 0.041* | |
| C8 | 0.3705 (3) | −0.19467 (18) | 0.19165 (15) | 0.0378 (5) | |
| H8 | 0.3800 | −0.2260 | 0.1284 | 0.045* | |
| C9 | 0.4435 (3) | −0.25045 (16) | 0.27749 (15) | 0.0344 (4) | |
| H9 | 0.5029 | −0.3173 | 0.2698 | 0.041* | |
| C10 | 0.4285 (2) | −0.20791 (14) | 0.37173 (13) | 0.0268 (4) | |
| C11 | 0.3374 (2) | −0.10535 (14) | 0.38426 (12) | 0.0232 (3) | |
| C12 | 0.2307 (2) | 0.02653 (14) | 0.48692 (12) | 0.0222 (3) | |
| C13 | 0.2521 (2) | 0.01703 (15) | 0.67504 (13) | 0.0282 (4) | |
| H13 | 0.3126 | −0.0494 | 0.6869 | 0.034* | |
| C14 | 0.1924 (3) | 0.08839 (16) | 0.74444 (14) | 0.0329 (4) | |
| H14 | 0.2065 | 0.0773 | 0.8135 | 0.039* | |
| C15 | −0.0484 (2) | 0.32689 (16) | 0.54198 (14) | 0.0307 (4) | |
| C16 | 0.5661 (3) | −0.36456 (17) | 0.45063 (18) | 0.0399 (5) | |
| H16A | 0.4794 | −0.4139 | 0.4207 | 0.060* | |
| H16B | 0.6029 | −0.3913 | 0.5164 | 0.060* | |
| H16C | 0.6639 | −0.3621 | 0.4095 | 0.060* | |
| N1 | 0.1082 (2) | 0.17940 (14) | 0.69986 (11) | 0.0311 (3) | |
| N2 | 0.31704 (18) | −0.06777 (12) | 0.47856 (10) | 0.0231 (3) | |
| N3 | 0.20387 (18) | 0.06431 (12) | 0.58360 (10) | 0.0233 (3) | |
| N4 | −0.1221 (3) | 0.40663 (16) | 0.55947 (15) | 0.0451 (5) | |
| O1 | 0.49489 (18) | −0.25543 (11) | 0.45838 (10) | 0.0338 (3) |
| C1 | 0.0238 (8) | 0.0251 (8) | 0.0228 (8) | −0.0042 (6) | 0.0013 (6) | 0.0000 (6) |
| C2 | 0.0248 (8) | 0.0261 (8) | 0.0263 (8) | −0.0034 (6) | 0.0010 (6) | 0.0034 (6) |
| C3 | 0.0277 (8) | 0.0265 (8) | 0.0248 (8) | −0.0023 (6) | −0.0009 (6) | 0.0060 (6) |
| C4 | 0.0253 (8) | 0.0247 (8) | 0.0215 (7) | −0.0043 (6) | 0.0006 (6) | 0.0037 (6) |
| C5 | 0.0313 (9) | 0.0297 (8) | 0.0201 (7) | −0.0062 (7) | −0.0001 (6) | 0.0037 (6) |
| C6 | 0.0294 (8) | 0.0281 (8) | 0.0211 (8) | −0.0089 (7) | 0.0025 (6) | −0.0002 (6) |
| C7 | 0.0440 (11) | 0.0377 (10) | 0.0205 (8) | −0.0124 (8) | 0.0049 (7) | −0.0007 (7) |
| C8 | 0.0487 (12) | 0.0401 (11) | 0.0257 (9) | −0.0111 (9) | 0.0107 (8) | −0.0086 (8) |
| C9 | 0.0401 (10) | 0.0298 (9) | 0.0344 (10) | −0.0070 (8) | 0.0113 (8) | −0.0078 (7) |
| C10 | 0.0292 (8) | 0.0236 (8) | 0.0282 (8) | −0.0061 (6) | 0.0051 (7) | −0.0006 (6) |
| C11 | 0.0249 (8) | 0.0237 (8) | 0.0213 (7) | −0.0074 (6) | 0.0031 (6) | −0.0008 (6) |
| C12 | 0.0224 (7) | 0.0242 (7) | 0.0200 (7) | −0.0060 (6) | 0.0011 (6) | 0.0013 (6) |
| C13 | 0.0329 (9) | 0.0296 (8) | 0.0218 (8) | −0.0015 (7) | −0.0018 (6) | 0.0046 (6) |
| C14 | 0.0385 (10) | 0.0368 (10) | 0.0234 (8) | −0.0033 (8) | 0.0014 (7) | 0.0012 (7) |
| C15 | 0.0314 (9) | 0.0321 (9) | 0.0285 (9) | −0.0003 (7) | 0.0019 (7) | 0.0026 (7) |
| C16 | 0.0434 (11) | 0.0258 (9) | 0.0509 (13) | 0.0023 (8) | 0.0056 (9) | −0.0012 (8) |
| N1 | 0.0360 (8) | 0.0337 (8) | 0.0239 (7) | −0.0032 (6) | 0.0048 (6) | −0.0023 (6) |
| N2 | 0.0261 (7) | 0.0234 (7) | 0.0199 (6) | −0.0041 (5) | 0.0016 (5) | 0.0002 (5) |
| N3 | 0.0260 (7) | 0.0237 (7) | 0.0199 (6) | −0.0025 (5) | 0.0000 (5) | 0.0009 (5) |
| N4 | 0.0515 (11) | 0.0399 (10) | 0.0444 (10) | 0.0086 (9) | 0.0066 (8) | −0.0008 (8) |
| O1 | 0.0423 (8) | 0.0264 (6) | 0.0330 (7) | 0.0034 (6) | 0.0050 (6) | 0.0004 (5) |
| C1—N1 | 1.315 (2) | C9—C10 | 1.368 (3) |
| C1—N3 | 1.382 (2) | C9—H9 | 0.9300 |
| C1—C2 | 1.436 (2) | C10—O1 | 1.360 (2) |
| C2—C3 | 1.354 (2) | C10—C11 | 1.429 (2) |
| C2—C15 | 1.436 (3) | C11—N2 | 1.354 (2) |
| C3—C4 | 1.434 (2) | C12—N2 | 1.319 (2) |
| C3—H3 | 0.9300 | C12—N3 | 1.394 (2) |
| C4—C5 | 1.380 (2) | C13—C14 | 1.361 (3) |
| C4—C12 | 1.424 (2) | C13—N3 | 1.375 (2) |
| C5—C6 | 1.402 (3) | C13—H13 | 0.9300 |
| C5—H5 | 0.9300 | C14—N1 | 1.384 (3) |
| C6—C7 | 1.418 (2) | C14—H14 | 0.9300 |
| C6—C11 | 1.425 (2) | C15—N4 | 1.142 (3) |
| C7—C8 | 1.360 (3) | C16—O1 | 1.423 (2) |
| C7—H7 | 0.9300 | C16—H16A | 0.9600 |
| C8—C9 | 1.412 (3) | C16—H16B | 0.9600 |
| C8—H8 | 0.9300 | C16—H16C | 0.9600 |
| N1—C1—N3 | 111.76 (15) | O1—C10—C11 | 114.95 (15) |
| N1—C1—C2 | 129.36 (16) | C9—C10—C11 | 119.84 (17) |
| N3—C1—C2 | 118.86 (15) | N2—C11—C6 | 122.89 (16) |
| C3—C2—C1 | 120.12 (16) | N2—C11—C10 | 118.69 (15) |
| C3—C2—C15 | 122.18 (16) | C6—C11—C10 | 118.41 (15) |
| C1—C2—C15 | 117.70 (16) | N2—C12—N3 | 117.42 (14) |
| C2—C3—C4 | 120.31 (16) | N2—C12—C4 | 125.71 (15) |
| C2—C3—H3 | 119.8 | N3—C12—C4 | 116.86 (15) |
| C4—C3—H3 | 119.8 | C14—C13—N3 | 105.12 (16) |
| C5—C4—C12 | 116.60 (16) | C14—C13—H13 | 127.4 |
| C5—C4—C3 | 122.82 (15) | N3—C13—H13 | 127.4 |
| C12—C4—C3 | 120.55 (15) | C13—C14—N1 | 111.80 (16) |
| C4—C5—C6 | 120.19 (16) | C13—C14—H14 | 124.1 |
| C4—C5—H5 | 119.9 | N1—C14—H14 | 124.1 |
| C6—C5—H5 | 119.9 | N4—C15—C2 | 179.7 (2) |
| C5—C6—C7 | 122.25 (17) | O1—C16—H16A | 109.5 |
| C5—C6—C11 | 117.77 (15) | O1—C16—H16B | 109.5 |
| C7—C6—C11 | 119.95 (17) | H16A—C16—H16B | 109.5 |
| C8—C7—C6 | 119.94 (18) | O1—C16—H16C | 109.5 |
| C8—C7—H7 | 120.0 | H16A—C16—H16C | 109.5 |
| C6—C7—H7 | 120.0 | H16B—C16—H16C | 109.5 |
| C7—C8—C9 | 120.70 (18) | C1—N1—C14 | 104.37 (15) |
| C7—C8—H8 | 119.6 | C12—N2—C11 | 116.81 (14) |
| C9—C8—H8 | 119.6 | C13—N3—C1 | 106.94 (14) |
| C10—C9—C8 | 121.13 (19) | C13—N3—C12 | 129.77 (15) |
| C10—C9—H9 | 119.4 | C1—N3—C12 | 123.28 (14) |
| C8—C9—H9 | 119.4 | C10—O1—C16 | 116.67 (15) |
| O1—C10—C9 | 125.21 (17) |
| H··· | ||||
| C8—H8···O1i | 0.93 | 2.50 | 3.366 (3) | 156 |
| C3—H3···N1ii | 0.93 | 2.62 | 3.394 (2) | 141 |
| Centroid distance | Interplanar spacing i | αii | γiii | ||
| 3.487 (2) | 3.322 | 2.68 | 15.42 | ||
| 3.487 (2) | 3.361 | 2.68 | 17.68 | ||
| 3.710 (2) | 3.382 | 0.00 | 24.27 | ||
| 3.689 (2) | 3.336 | 5.01 | 25.28 | ||
| 3.689 (2) | 3.397 | 5.01 | 22.98 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C8—H8⋯O1i | 0.93 | 2.50 | 3.366 (3) | 156 |
| C3—H3⋯N1ii | 0.93 | 2.62 | 3.394 (2) | 141 |
Symmetry codes: (i) ; (ii) .
π–π stacking interactions (Å, °)
| Centroid distance | Interplanar spacing i | αii | γiii | ||
|---|---|---|---|---|---|
| 3.487 (2) | 3.322 | 2.68 | 15.42 | ||
| 3.487 (2) | 3.361 | 2.68 | 17.68 | ||
| 3.710 (2) | 3.382 | 0.00 | 24.27 | ||
| 3.689 (2) | 3.336 | 5.01 | 25.28 | ||
| 3.689 (2) | 3.397 | 5.01 | 22.98 |
Notes: (i) perpendicular distance between the centroid of the first ring and the plane of the second ring; (ii) dihedral angle between the plane of the first ring and the plane of the second ring; (iii) angle between the centroid of the first ring and the normal to the plane of the second ring; (iv) symmetry code: ; (v) symmetry code: . Cg1 is the centroid of atoms N1/C1/N2/C13/C14, Cg2 is the centroid of atoms N3/C12/C4–C6/C11, Cg3 is the centroid of atoms N2/C1–C4/C12 and Cg4 is the centroid of atoms C6–C11.