Literature DB >> 21577970

10-Methoxy-benzo[g]imidazo[1,2-a][1,8]naphthyridine-4-carbonitrile.

Andrii V Tarasov, Tatyana A Volovnenko, Noël Lugan, Yulian M Volovenko.   

Abstract

In the title compound, C(16)H(10)N(4)O, both the meth-oxy and nitrile substituents lie in the plane defined by the benzo[g]imidazo[1,2-a]-1,8-naphthyridine ring system, resulting in a nearly planar geometry for the entire mol-ecule (r.m.s. deviation of the non-H atoms from the mean plane is 0.044 Å). In the solid-state, the mol-ecules form a three-dimensional polymer through inter-molecular C-H⋯N and C-H⋯O hydrogen bonds. In addition, the packing mode results in stabilizing π-π stacking inter-actions between the asymmetric units.

Entities:  

Year:  2009        PMID: 21577970      PMCID: PMC2970372          DOI: 10.1107/S1600536809037544

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound and a series of similar products, see: Volovnenko et al. (2009 ▶). For related compounds and their anti­bacterial or photophysical properties, see: Kondo et al. (1990 ▶); Gokhale & Seshadri (1987 ▶); Rajagopal & Seshadri (1991 ▶); Vijila et al. (2000 ▶). For the solid-state structures of other imidazonaphthyridine derivatives, see: Fun et al. (1996 ▶); Sivakumar et al. (1996a ▶,b ▶); Muthamizhchelvan et al. (2005a ▶,b ▶). For general metrical features within organic compounds, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C16H10N4O M = 274.28 Monoclinic, a = 7.710 (2) Å b = 11.970 (2) Å c = 13.340 (3) Å β = 93.55 (3)° V = 1228.8 (5) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 180 K 0.40 × 0.40 × 0.35 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.95, T max = 0.97 45253 measured reflections 3532 independent reflections 2507 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.164 S = 1.08 3532 reflections 191 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker (2007 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and CAMERON (Watkin et al., 1993 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809037544/fj2229sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809037544/fj2229Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H10N4OF(000) = 568
Mr = 274.28Dx = 1.483 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9999 reflections
a = 7.710 (2) Åθ = 2.7–34.9°
b = 11.970 (2) ŵ = 0.10 mm1
c = 13.340 (3) ÅT = 180 K
β = 93.55 (3)°Block, brown
V = 1228.8 (5) Å30.40 × 0.40 × 0.35 mm
Z = 4
Bruker APEXII diffractometer3532 independent reflections
Radiation source: sealed tube2507 reflections with I > 2σ(I)
graphiteRint = 0.050
φ scansθmax = 29.8°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −10→10
Tmin = 0.95, Tmax = 0.97k = −16→16
45253 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0616P)2 + 1.0259P] where P = (Fo2 + 2Fc2)/3
3532 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.33 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/Ueq
C10.1160 (2)0.16186 (14)0.60289 (12)0.0239 (3)
C20.0449 (2)0.22693 (14)0.51977 (13)0.0257 (3)
C30.0661 (2)0.19331 (15)0.42439 (13)0.0264 (4)
H30.02010.23580.37080.032*
C40.1593 (2)0.09249 (14)0.40567 (12)0.0239 (3)
C50.1800 (2)0.05231 (15)0.31021 (13)0.0271 (4)
H50.13520.09210.25460.033*
C60.2686 (2)−0.04838 (15)0.29677 (12)0.0262 (4)
C70.2865 (3)−0.09560 (17)0.20044 (13)0.0339 (4)
H70.2407−0.05880.14330.041*
C80.3705 (3)−0.19467 (18)0.19165 (15)0.0378 (5)
H80.3800−0.22600.12840.045*
C90.4435 (3)−0.25045 (16)0.27749 (15)0.0344 (4)
H90.5029−0.31730.26980.041*
C100.4285 (2)−0.20791 (14)0.37173 (13)0.0268 (4)
C110.3374 (2)−0.10535 (14)0.38426 (12)0.0232 (3)
C120.2307 (2)0.02653 (14)0.48692 (12)0.0222 (3)
C130.2521 (2)0.01703 (15)0.67504 (13)0.0282 (4)
H130.3126−0.04940.68690.034*
C140.1924 (3)0.08839 (16)0.74444 (14)0.0329 (4)
H140.20650.07730.81350.039*
C15−0.0484 (2)0.32689 (16)0.54198 (14)0.0307 (4)
C160.5661 (3)−0.36456 (17)0.45063 (18)0.0399 (5)
H16A0.4794−0.41390.42070.060*
H16B0.6029−0.39130.51640.060*
H16C0.6639−0.36210.40950.060*
N10.1082 (2)0.17940 (14)0.69986 (11)0.0311 (3)
N20.31704 (18)−0.06777 (12)0.47856 (10)0.0231 (3)
N30.20387 (18)0.06431 (12)0.58360 (10)0.0233 (3)
N4−0.1221 (3)0.40663 (16)0.55947 (15)0.0451 (5)
O10.49489 (18)−0.25543 (11)0.45838 (10)0.0338 (3)
U11U22U33U12U13U23
C10.0238 (8)0.0251 (8)0.0228 (8)−0.0042 (6)0.0013 (6)0.0000 (6)
C20.0248 (8)0.0261 (8)0.0263 (8)−0.0034 (6)0.0010 (6)0.0034 (6)
C30.0277 (8)0.0265 (8)0.0248 (8)−0.0023 (6)−0.0009 (6)0.0060 (6)
C40.0253 (8)0.0247 (8)0.0215 (7)−0.0043 (6)0.0006 (6)0.0037 (6)
C50.0313 (9)0.0297 (8)0.0201 (7)−0.0062 (7)−0.0001 (6)0.0037 (6)
C60.0294 (8)0.0281 (8)0.0211 (8)−0.0089 (7)0.0025 (6)−0.0002 (6)
C70.0440 (11)0.0377 (10)0.0205 (8)−0.0124 (8)0.0049 (7)−0.0007 (7)
C80.0487 (12)0.0401 (11)0.0257 (9)−0.0111 (9)0.0107 (8)−0.0086 (8)
C90.0401 (10)0.0298 (9)0.0344 (10)−0.0070 (8)0.0113 (8)−0.0078 (7)
C100.0292 (8)0.0236 (8)0.0282 (8)−0.0061 (6)0.0051 (7)−0.0006 (6)
C110.0249 (8)0.0237 (8)0.0213 (7)−0.0074 (6)0.0031 (6)−0.0008 (6)
C120.0224 (7)0.0242 (7)0.0200 (7)−0.0060 (6)0.0011 (6)0.0013 (6)
C130.0329 (9)0.0296 (8)0.0218 (8)−0.0015 (7)−0.0018 (6)0.0046 (6)
C140.0385 (10)0.0368 (10)0.0234 (8)−0.0033 (8)0.0014 (7)0.0012 (7)
C150.0314 (9)0.0321 (9)0.0285 (9)−0.0003 (7)0.0019 (7)0.0026 (7)
C160.0434 (11)0.0258 (9)0.0509 (13)0.0023 (8)0.0056 (9)−0.0012 (8)
N10.0360 (8)0.0337 (8)0.0239 (7)−0.0032 (6)0.0048 (6)−0.0023 (6)
N20.0261 (7)0.0234 (7)0.0199 (6)−0.0041 (5)0.0016 (5)0.0002 (5)
N30.0260 (7)0.0237 (7)0.0199 (6)−0.0025 (5)0.0000 (5)0.0009 (5)
N40.0515 (11)0.0399 (10)0.0444 (10)0.0086 (9)0.0066 (8)−0.0008 (8)
O10.0423 (8)0.0264 (6)0.0330 (7)0.0034 (6)0.0050 (6)0.0004 (5)
C1—N11.315 (2)C9—C101.368 (3)
C1—N31.382 (2)C9—H90.9300
C1—C21.436 (2)C10—O11.360 (2)
C2—C31.354 (2)C10—C111.429 (2)
C2—C151.436 (3)C11—N21.354 (2)
C3—C41.434 (2)C12—N21.319 (2)
C3—H30.9300C12—N31.394 (2)
C4—C51.380 (2)C13—C141.361 (3)
C4—C121.424 (2)C13—N31.375 (2)
C5—C61.402 (3)C13—H130.9300
C5—H50.9300C14—N11.384 (3)
C6—C71.418 (2)C14—H140.9300
C6—C111.425 (2)C15—N41.142 (3)
C7—C81.360 (3)C16—O11.423 (2)
C7—H70.9300C16—H16A0.9600
C8—C91.412 (3)C16—H16B0.9600
C8—H80.9300C16—H16C0.9600
N1—C1—N3111.76 (15)O1—C10—C11114.95 (15)
N1—C1—C2129.36 (16)C9—C10—C11119.84 (17)
N3—C1—C2118.86 (15)N2—C11—C6122.89 (16)
C3—C2—C1120.12 (16)N2—C11—C10118.69 (15)
C3—C2—C15122.18 (16)C6—C11—C10118.41 (15)
C1—C2—C15117.70 (16)N2—C12—N3117.42 (14)
C2—C3—C4120.31 (16)N2—C12—C4125.71 (15)
C2—C3—H3119.8N3—C12—C4116.86 (15)
C4—C3—H3119.8C14—C13—N3105.12 (16)
C5—C4—C12116.60 (16)C14—C13—H13127.4
C5—C4—C3122.82 (15)N3—C13—H13127.4
C12—C4—C3120.55 (15)C13—C14—N1111.80 (16)
C4—C5—C6120.19 (16)C13—C14—H14124.1
C4—C5—H5119.9N1—C14—H14124.1
C6—C5—H5119.9N4—C15—C2179.7 (2)
C5—C6—C7122.25 (17)O1—C16—H16A109.5
C5—C6—C11117.77 (15)O1—C16—H16B109.5
C7—C6—C11119.95 (17)H16A—C16—H16B109.5
C8—C7—C6119.94 (18)O1—C16—H16C109.5
C8—C7—H7120.0H16A—C16—H16C109.5
C6—C7—H7120.0H16B—C16—H16C109.5
C7—C8—C9120.70 (18)C1—N1—C14104.37 (15)
C7—C8—H8119.6C12—N2—C11116.81 (14)
C9—C8—H8119.6C13—N3—C1106.94 (14)
C10—C9—C8121.13 (19)C13—N3—C12129.77 (15)
C10—C9—H9119.4C1—N3—C12123.28 (14)
C8—C9—H9119.4C10—O1—C16116.67 (15)
O1—C10—C9125.21 (17)
D—H···AD—HH···AD···AD—H···A
C8—H8···O1i0.932.503.366 (3)156
C3—H3···N1ii0.932.623.394 (2)141
CgiCgjCentroid distanceInterplanar spacing iαiiγiii
Cg1Cg2iv3.487 (2)3.3222.6815.42
Cg2Cg1iv3.487 (2)3.3612.6817.68
Cg3Cg3iv3.710 (2)3.3820.0024.27
Cg1Cg4v3.689 (2)3.3365.0125.28
Cg4Cg1v3.689 (2)3.3975.0122.98
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯O1i0.932.503.366 (3)156
C3—H3⋯N1ii0.932.623.394 (2)141

Symmetry codes: (i) ; (ii) .

Table 2

π–π stacking interactions (Å, °)

CgiCgjCentroid distanceInterplanar spacing iαiiγiii
Cg1Cg2iv3.487 (2)3.3222.6815.42
Cg2Cg1iv3.487 (2)3.3612.6817.68
Cg3Cg3iv3.710 (2)3.3820.0024.27
Cg1Cg4v3.689 (2)3.3365.0125.28
Cg4Cg1v3.689 (2)3.3975.0122.98

Notes: (i) perpendicular distance between the centroid of the first ring and the plane of the second ring; (ii) dihedral angle between the plane of the first ring and the plane of the second ring; (iii) angle between the centroid of the first ring and the normal to the plane of the second ring; (iv) symmetry code: ; (v) symmetry code: . Cg1 is the centroid of atoms N1/C1/N2/C13/C14, Cg2 is the centroid of atoms N3/C12/C4–C6/C11, Cg3 is the centroid of atoms N2/C1–C4/C12 and Cg4 is the centroid of atoms C6–C11.

  3 in total

1.  Effect of solvents on the photophysical properties of substituted imidazonaphthyridine derivatives.

Authors:  C Vijila; A Ramalingam; V S Gowri; S O Chua; K Sivakumar
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2000-04       Impact factor: 4.098

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and antibacterial activity of thiazolo-, oxazolo-, and imidazolo[3,2-a][1,8]naphthyridinecarboxylic acids.

Authors:  H Kondo; M Taguchi; Y Inoue; F Sakamoto; G Tsukamoto
Journal:  J Med Chem       Date:  1990-07       Impact factor: 7.446

  3 in total

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