Literature DB >> 21577938

Isopropyl 2-(5-fluoro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(14)H(15)FO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent are located on opposite sides of the plane of the benzofuran fragment which is essentially planar with a mean deviation of 0.008 (1) Å from its least-squares plane. The crystal structure stabilized by three different inter-molecular non-classical C-H⋯O hydrogen bonds. The crystal structure also exhibits aromatic π-π inter-actions between the benzene rings of adjacent benzofuran ring systems [centroid-centroid distance = 3.688 (2) Å].

Entities:  

Year:  2009        PMID: 21577938      PMCID: PMC2970216          DOI: 10.1107/S1600536809037003

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar alkyl 2-(5-fluoro-3-methyl­sulfinyl-1-benzofuran-2-yl) acetate derivatives, see: Choi et al. (2009 ▶). For the pharmacological activity of benzofuran compounds, see: Howlett et al. (1999 ▶); Twyman & Allsop (1999 ▶).

Experimental

Crystal data

C14H15FO4S M = 298.32 Monoclinic, a = 11.6332 (6) Å b = 14.9522 (7) Å c = 8.2333 (4) Å β = 102.277 (1)° V = 1399.36 (12) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 173 K 0.25 × 0.20 × 0.16 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.940, T max = 0.961 12229 measured reflections 3173 independent reflections 2476 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.098 S = 1.09 3173 reflections 182 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.39 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I. DOI: 10.1107/S1600536809037003/bq2158sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809037003/bq2158Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15FO4SF(000) = 624
Mr = 298.32Dx = 1.416 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5216 reflections
a = 11.6332 (6) Åθ = 2.3–27.4°
b = 14.9522 (7) ŵ = 0.25 mm1
c = 8.2333 (4) ÅT = 173 K
β = 102.277 (1)°Block, colorless
V = 1399.36 (12) Å30.25 × 0.20 × 0.16 mm
Z = 4
Bruker SMART CCD diffractometer3173 independent reflections
Radiation source: fine-focus sealed tube2476 reflections with I > 2σ(I)
graphiteRint = 0.043
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 1.8°
φ and ω scansh = −14→15
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)k = −19→19
Tmin = 0.940, Tmax = 0.961l = −10→10
12229 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0423P)2 + 0.5417P] where P = (Fo2 + 2Fc2)/3
3173 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.16889 (4)0.32823 (3)0.59899 (5)0.02546 (13)
F0.53377 (11)0.32123 (8)0.19202 (14)0.0427 (3)
O10.47612 (10)0.43326 (8)0.79555 (14)0.0242 (3)
O20.19830 (10)0.54133 (8)1.03615 (14)0.0264 (3)
O30.17889 (11)0.53806 (9)0.75830 (15)0.0329 (3)
O40.17181 (12)0.23235 (9)0.54858 (18)0.0393 (3)
C10.31410 (14)0.36896 (11)0.6411 (2)0.0222 (3)
C20.40529 (14)0.36553 (11)0.5455 (2)0.0222 (3)
C30.41420 (16)0.33514 (12)0.3875 (2)0.0264 (4)
H30.35160.30780.31550.032*
C40.52168 (16)0.34834 (12)0.3458 (2)0.0289 (4)
C50.61801 (16)0.38849 (12)0.4473 (2)0.0284 (4)
H50.68800.39500.41110.034*
C60.60937 (14)0.41885 (12)0.6032 (2)0.0257 (4)
H60.67220.44640.67440.031*
C70.50247 (14)0.40604 (11)0.6470 (2)0.0224 (3)
C80.36106 (14)0.40933 (11)0.7872 (2)0.0229 (4)
C90.31082 (15)0.43478 (12)0.9330 (2)0.0252 (4)
H9A0.37430.45241.02390.030*
H9B0.27250.38310.96890.030*
C100.22306 (14)0.51050 (12)0.8949 (2)0.0234 (4)
C110.11677 (16)0.61749 (12)1.0234 (2)0.0298 (4)
H110.05550.61210.92180.036*
C120.06204 (17)0.61224 (13)1.1728 (2)0.0340 (4)
H12A0.01910.55721.16990.051*
H12B0.00940.66181.17180.051*
H12C0.12260.61431.27210.051*
C130.1857 (2)0.70278 (14)1.0176 (3)0.0504 (6)
H13A0.21830.70280.91990.076*
H13B0.24820.70641.11460.076*
H13C0.13440.75331.01470.076*
C140.11297 (18)0.39058 (15)0.4135 (2)0.0397 (5)
H14A0.15290.37250.32820.060*
H14B0.12580.45320.43560.060*
H14C0.03020.37940.37730.060*
U11U22U33U12U13U23
S0.0205 (2)0.0281 (2)0.0274 (2)−0.00173 (17)0.00402 (16)−0.00285 (18)
F0.0481 (7)0.0526 (8)0.0320 (6)−0.0002 (6)0.0189 (5)−0.0125 (5)
O10.0211 (6)0.0286 (6)0.0221 (6)−0.0011 (5)0.0031 (5)−0.0028 (5)
O20.0283 (6)0.0295 (7)0.0213 (6)0.0066 (5)0.0046 (5)−0.0010 (5)
O30.0323 (7)0.0439 (8)0.0226 (6)0.0096 (6)0.0062 (5)0.0042 (6)
O40.0339 (7)0.0291 (7)0.0529 (9)−0.0065 (6)0.0048 (6)−0.0116 (6)
C10.0203 (8)0.0202 (8)0.0253 (8)0.0012 (6)0.0030 (6)0.0000 (7)
C20.0222 (8)0.0196 (8)0.0241 (8)0.0022 (6)0.0033 (6)0.0002 (7)
C30.0281 (9)0.0243 (9)0.0258 (8)0.0002 (7)0.0037 (7)−0.0046 (7)
C40.0359 (10)0.0275 (9)0.0254 (9)0.0052 (8)0.0113 (8)−0.0022 (7)
C50.0256 (9)0.0279 (9)0.0339 (9)0.0044 (7)0.0108 (7)0.0028 (8)
C60.0200 (8)0.0263 (9)0.0298 (9)0.0015 (7)0.0029 (7)0.0005 (7)
C70.0241 (8)0.0213 (8)0.0217 (8)0.0028 (7)0.0042 (6)0.0000 (6)
C80.0198 (8)0.0233 (8)0.0251 (8)0.0009 (6)0.0037 (6)0.0026 (7)
C90.0263 (9)0.0283 (9)0.0205 (8)0.0009 (7)0.0037 (7)0.0005 (7)
C100.0215 (8)0.0274 (9)0.0214 (8)−0.0046 (7)0.0052 (6)−0.0015 (7)
C110.0299 (9)0.0320 (10)0.0269 (9)0.0098 (8)0.0049 (7)0.0021 (8)
C120.0301 (9)0.0382 (11)0.0359 (10)0.0079 (8)0.0119 (8)0.0019 (9)
C130.0648 (15)0.0322 (11)0.0636 (15)0.0043 (10)0.0345 (13)0.0087 (11)
C140.0302 (10)0.0517 (13)0.0329 (10)0.0040 (9)−0.0030 (8)0.0067 (9)
S—O41.4949 (14)C6—C71.380 (2)
S—C11.7595 (17)C6—H60.9300
S—C141.7894 (19)C8—C91.491 (2)
F—C41.365 (2)C9—C101.512 (2)
O1—C81.3731 (19)C9—H9A0.9700
O1—C71.384 (2)C9—H9B0.9700
O2—C101.338 (2)C11—C121.502 (2)
O2—C111.472 (2)C11—C131.513 (3)
O3—C101.205 (2)C11—H110.9800
C1—C81.353 (2)C12—H12A0.9600
C1—C21.450 (2)C12—H12B0.9600
C2—C71.394 (2)C12—H12C0.9600
C2—C31.402 (2)C13—H13A0.9600
C3—C41.380 (2)C13—H13B0.9600
C3—H30.9300C13—H13C0.9600
C4—C51.384 (3)C14—H14A0.9600
C5—C61.385 (3)C14—H14B0.9600
C5—H50.9300C14—H14C0.9600
O4—S—C1108.00 (8)C10—C9—H9A109.0
O4—S—C14106.75 (10)C8—C9—H9B109.0
C1—S—C1498.47 (9)C10—C9—H9B109.0
C8—O1—C7106.03 (12)H9A—C9—H9B107.8
C10—O2—C11117.35 (13)O3—C10—O2124.43 (16)
C8—C1—C2107.15 (14)O3—C10—C9125.76 (15)
C8—C1—S121.23 (13)O2—C10—C9109.79 (14)
C2—C1—S131.57 (13)O2—C11—C12106.27 (14)
C7—C2—C3119.14 (15)O2—C11—C13108.45 (16)
C7—C2—C1104.64 (14)C12—C11—C13112.95 (17)
C3—C2—C1136.21 (16)O2—C11—H11109.7
C4—C3—C2115.75 (16)C12—C11—H11109.7
C4—C3—H3122.1C13—C11—H11109.7
C2—C3—H3122.1C11—C12—H12A109.5
F—C4—C3117.80 (16)C11—C12—H12B109.5
F—C4—C5117.32 (16)H12A—C12—H12B109.5
C3—C4—C5124.87 (16)C11—C12—H12C109.5
C4—C5—C6119.52 (16)H12A—C12—H12C109.5
C4—C5—H5120.2H12B—C12—H12C109.5
C6—C5—H5120.2C11—C13—H13A109.5
C7—C6—C5116.35 (16)C11—C13—H13B109.5
C7—C6—H6121.8H13A—C13—H13B109.5
C5—C6—H6121.8C11—C13—H13C109.5
C6—C7—O1124.87 (15)H13A—C13—H13C109.5
C6—C7—C2124.37 (16)H13B—C13—H13C109.5
O1—C7—C2110.75 (14)S—C14—H14A109.5
C1—C8—O1111.43 (14)S—C14—H14B109.5
C1—C8—C9132.54 (16)H14A—C14—H14B109.5
O1—C8—C9115.98 (14)S—C14—H14C109.5
C8—C9—C10112.79 (14)H14A—C14—H14C109.5
C8—C9—H9A109.0H14B—C14—H14C109.5
O4—S—C1—C8−126.67 (15)C3—C2—C7—C60.0 (3)
C14—S—C1—C8122.54 (15)C1—C2—C7—C6−178.66 (16)
O4—S—C1—C250.55 (18)C3—C2—C7—O1178.64 (14)
C14—S—C1—C2−60.23 (18)C1—C2—C7—O10.01 (18)
C8—C1—C2—C7−0.17 (18)C2—C1—C8—O10.27 (19)
S—C1—C2—C7−177.69 (14)S—C1—C8—O1178.10 (11)
C8—C1—C2—C3−178.44 (19)C2—C1—C8—C9177.57 (17)
S—C1—C2—C34.0 (3)S—C1—C8—C9−4.6 (3)
C7—C2—C3—C40.1 (2)C7—O1—C8—C1−0.26 (18)
C1—C2—C3—C4178.20 (18)C7—O1—C8—C9−178.05 (14)
C2—C3—C4—F−178.87 (15)C1—C8—C9—C10−69.4 (2)
C2—C3—C4—C50.0 (3)O1—C8—C9—C10107.82 (16)
F—C4—C5—C6178.67 (16)C11—O2—C10—O3−3.7 (2)
C3—C4—C5—C6−0.2 (3)C11—O2—C10—C9178.11 (14)
C4—C5—C6—C70.3 (3)C8—C9—C10—O313.5 (2)
C5—C6—C7—O1−178.66 (15)C8—C9—C10—O2−168.35 (14)
C5—C6—C7—C2−0.2 (3)C10—O2—C11—C12154.84 (15)
C8—O1—C7—C6178.81 (16)C10—O2—C11—C13−83.45 (19)
C8—O1—C7—C20.15 (18)
D—H···AD—HH···AD···AD—H···A
C5—H5···O3i0.932.503.370 (2)155
C6—H6···O2ii0.932.543.369 (2)149
C9—H9B···O4iii0.972.263.228 (2)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O3i0.932.503.370 (2)155
C6—H6⋯O2ii0.932.543.369 (2)149
C9—H9B⋯O4iii0.972.263.228 (2)176

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  Inhibition of fibril formation in beta-amyloid peptide by a novel series of benzofurans.

Authors:  D R Howlett; A E Perry; F Godfrey; J E Swatton; K H Jennings; C Spitzfaden; H Wadsworth; S J Wood; R E Markwell
Journal:  Biochem J       Date:  1999-05-15       Impact factor: 3.857

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Methyl 2-(5-fluoro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

4.  Ethyl 2-(5-fluoro-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-11
  4 in total

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