Literature DB >> 21577902

1-[2-(2,4-Dinitro-benzyl-ideneamino)phen-yl]-3-phenyl-thio-urea.

M Umadevi, S Devaraj, M Kandaswamy, G Chakkaravarthi, V Manivannan.   

Abstract

In the title compound, C(20)H(15)N(5)O(4)S, the central benzene ring makes dihedral angles of 59.5 (1) and 51.7 (1)°, respectively, with the terminal phenyl and benzene rings. The mol-ecular structure exhibits weak intra-molecular N-H⋯N and C-H⋯S inter-actions. In the crystal structure, mol-ecules are linked by weak inter-molecular N-H⋯S and C-H⋯O inter-actions, forming a chain along [11].

Entities:  

Year:  2009        PMID: 21577902      PMCID: PMC2970362          DOI: 10.1107/S1600536809035880

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­ureas, see: Huebner et al. (1953 ▶); Madan & Taneja (1991 ▶); Manjula et al. (2009 ▶). For related structures, see: Gayathri et al. (2007 ▶, 2008 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H15N5O4S M = 421.43 Monoclinic, a = 8.362 (5) Å b = 18.767 (3) Å c = 12.379 (4) Å β = 94.827 (5)° V = 1935.7 (14) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 295 K 0.20 × 0.16 × 0.16 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (; Sheldrick, 1996 ▶) T min = 0.960, T max = 0.968 28336 measured reflections 6878 independent reflections 4509 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.137 S = 1.02 6878 reflections 271 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809035880/is2457sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035880/is2457Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H15N5O4SF(000) = 872
Mr = 421.43Dx = 1.446 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9702 reflections
a = 8.362 (5) Åθ = 2.2–32.3°
b = 18.767 (3) ŵ = 0.21 mm1
c = 12.379 (4) ÅT = 295 K
β = 94.827 (5)°Prism, orange
V = 1935.7 (14) Å30.20 × 0.16 × 0.16 mm
Z = 4
Bruker Kappa APEXII diffractometer6878 independent reflections
Radiation source: fine-focus sealed tube4509 reflections with I > 2σ(I)
graphiteRint = 0.028
ω and φ scansθmax = 32.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.960, Tmax = 0.968k = −28→26
28336 measured reflectionsl = −9→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0628P)2 + 0.3472P] where P = (Fo2 + 2Fc2)/3
6878 reflections(Δ/σ)max < 0.001
271 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.37 e Å3
xyzUiso*/Ueq
C10.62398 (16)0.29698 (7)0.34283 (10)0.0381 (3)
C20.65955 (15)0.23913 (7)0.41328 (9)0.0360 (3)
C30.76661 (18)0.24941 (8)0.50420 (11)0.0448 (3)
H30.78600.21270.55410.054*
C40.84381 (19)0.31360 (9)0.52044 (12)0.0511 (4)
H40.91490.32000.58160.061*
C50.8174 (2)0.36867 (9)0.44751 (13)0.0560 (4)
H50.87400.41110.45760.067*
C60.70627 (19)0.36049 (8)0.35919 (12)0.0496 (4)
H60.68680.39790.31060.060*
C70.42126 (16)0.33645 (8)0.21914 (10)0.0412 (3)
H70.43210.38090.25220.049*
C80.30541 (16)0.32650 (7)0.12401 (10)0.0381 (3)
C90.32496 (18)0.26958 (8)0.05491 (11)0.0459 (3)
H90.40400.23590.07390.055*
C100.23061 (19)0.26145 (9)−0.04113 (11)0.0478 (3)
H100.24410.2225−0.08590.057*
C110.11616 (16)0.31229 (8)−0.06909 (10)0.0425 (3)
C120.08777 (17)0.36881 (8)−0.00335 (11)0.0424 (3)
H120.00870.4023−0.02340.051*
C130.18123 (16)0.37421 (8)0.09399 (10)0.0393 (3)
C140.57689 (16)0.11081 (7)0.42739 (10)0.0387 (3)
C150.41735 (19)0.06746 (7)0.26115 (11)0.0435 (3)
C160.2548 (2)0.05512 (8)0.24467 (12)0.0471 (3)
H160.19550.04570.30340.057*
C170.1798 (2)0.05672 (10)0.14094 (14)0.0606 (4)
H170.07000.04820.12980.073*
C180.2668 (3)0.07077 (10)0.05446 (13)0.0687 (5)
H180.21610.0721−0.01530.082*
C190.4278 (3)0.08286 (11)0.07051 (14)0.0703 (5)
H190.48620.09230.01140.084*
C200.5058 (2)0.08133 (10)0.17423 (13)0.0599 (4)
H200.61570.08950.18490.072*
N10.01932 (16)0.30558 (9)−0.17349 (10)0.0534 (3)
N20.14010 (17)0.43172 (8)0.16707 (11)0.0542 (3)
N30.50634 (14)0.28461 (6)0.25608 (9)0.0406 (3)
N40.58017 (14)0.17574 (6)0.38222 (8)0.0409 (3)
H4A0.52160.17910.32190.049*
N50.49272 (17)0.06127 (7)0.36821 (10)0.0529 (3)
H5A0.48320.02060.39900.064*
O10.0455 (2)0.25501 (10)−0.23077 (11)0.0917 (5)
O2−0.08088 (15)0.35115 (8)−0.19739 (9)0.0652 (3)
O30.0704 (2)0.48301 (8)0.12851 (13)0.0930 (5)
O40.1705 (2)0.42321 (9)0.26429 (11)0.0902 (5)
S10.66368 (5)0.08789 (2)0.55035 (3)0.04838 (12)
U11U22U33U12U13U23
C10.0389 (7)0.0402 (7)0.0341 (5)0.0022 (5)−0.0038 (5)0.0060 (5)
C20.0366 (7)0.0377 (7)0.0330 (5)0.0040 (5)−0.0017 (5)0.0047 (5)
C30.0487 (8)0.0449 (8)0.0384 (6)0.0049 (6)−0.0100 (5)0.0062 (5)
C40.0529 (9)0.0506 (9)0.0465 (7)0.0005 (7)−0.0159 (6)−0.0013 (6)
C50.0595 (10)0.0439 (8)0.0609 (9)−0.0082 (7)−0.0171 (7)0.0021 (7)
C60.0544 (9)0.0403 (8)0.0516 (8)−0.0045 (6)−0.0108 (6)0.0107 (6)
C70.0429 (7)0.0426 (7)0.0368 (6)0.0018 (6)−0.0041 (5)0.0065 (5)
C80.0371 (7)0.0428 (7)0.0335 (5)0.0017 (5)−0.0012 (5)0.0091 (5)
C90.0442 (8)0.0509 (8)0.0416 (6)0.0108 (6)−0.0018 (5)0.0056 (6)
C100.0498 (8)0.0550 (9)0.0381 (6)0.0062 (7)0.0015 (6)−0.0022 (6)
C110.0374 (7)0.0572 (9)0.0322 (5)−0.0021 (6)−0.0015 (5)0.0077 (5)
C120.0375 (7)0.0482 (8)0.0405 (6)0.0042 (6)−0.0030 (5)0.0106 (5)
C130.0403 (7)0.0408 (7)0.0364 (6)0.0024 (6)0.0002 (5)0.0062 (5)
C140.0401 (7)0.0392 (7)0.0364 (6)0.0017 (5)−0.0001 (5)0.0072 (5)
C150.0586 (9)0.0340 (7)0.0369 (6)−0.0010 (6)−0.0032 (6)0.0032 (5)
C160.0558 (9)0.0397 (7)0.0455 (7)0.0040 (7)0.0019 (6)−0.0005 (6)
C170.0665 (11)0.0515 (10)0.0602 (9)0.0048 (8)−0.0163 (8)−0.0025 (7)
C180.1052 (16)0.0567 (11)0.0405 (7)0.0006 (10)−0.0150 (8)−0.0024 (7)
C190.1034 (17)0.0702 (12)0.0388 (7)−0.0056 (11)0.0143 (9)0.0021 (7)
C200.0657 (11)0.0657 (11)0.0489 (8)−0.0085 (9)0.0079 (7)0.0050 (7)
N10.0498 (7)0.0732 (10)0.0357 (5)−0.0006 (7)−0.0040 (5)0.0038 (6)
N20.0549 (8)0.0525 (8)0.0531 (7)0.0126 (6)−0.0072 (6)−0.0041 (6)
N30.0413 (6)0.0429 (6)0.0360 (5)−0.0013 (5)−0.0064 (4)0.0103 (4)
N40.0464 (6)0.0384 (6)0.0358 (5)−0.0013 (5)−0.0096 (4)0.0074 (4)
N50.0704 (9)0.0438 (7)0.0420 (6)−0.0131 (6)−0.0106 (6)0.0141 (5)
O10.1080 (12)0.1083 (13)0.0534 (7)0.0283 (10)−0.0248 (7)−0.0255 (8)
O20.0583 (7)0.0850 (9)0.0490 (6)0.0074 (6)−0.0157 (5)0.0116 (6)
O30.1231 (13)0.0625 (9)0.0886 (10)0.0423 (9)−0.0200 (9)−0.0069 (7)
O40.1129 (13)0.1065 (12)0.0489 (7)0.0467 (10)−0.0073 (7)−0.0162 (7)
S10.0547 (2)0.0481 (2)0.04016 (17)−0.00134 (16)−0.00860 (14)0.01530 (14)
C1—C61.383 (2)C12—H120.9300
C1—C21.4085 (17)C13—N21.468 (2)
C1—N31.4132 (16)C14—N41.3419 (17)
C2—C31.3914 (18)C14—N51.3452 (19)
C2—N41.4003 (17)C14—S11.6860 (13)
C3—C41.374 (2)C15—C161.377 (2)
C3—H30.9300C15—C201.381 (2)
C4—C51.378 (2)C15—N51.4236 (17)
C4—H40.9300C16—C171.381 (2)
C5—C61.383 (2)C16—H160.9300
C5—H50.9300C17—C181.370 (3)
C6—H60.9300C17—H170.9300
C7—N31.2678 (17)C18—C191.363 (3)
C7—C81.4725 (18)C18—H180.9300
C7—H70.9300C19—C201.391 (2)
C8—C91.387 (2)C19—H190.9300
C8—C131.3975 (19)C20—H200.9300
C9—C101.379 (2)N1—O11.215 (2)
C9—H90.9300N1—O21.2162 (19)
C10—C111.375 (2)N2—O31.2031 (18)
C10—H100.9300N2—O41.2194 (18)
C11—C121.370 (2)N4—H4A0.8600
C11—N11.4716 (17)N5—H5A0.8600
C12—C131.3837 (18)
C6—C1—C2119.82 (12)C12—C13—N2116.50 (12)
C6—C1—N3123.98 (12)C8—C13—N2120.97 (12)
C2—C1—N3116.18 (12)N4—C14—N5115.39 (11)
C3—C2—N4126.71 (12)N4—C14—S1125.83 (11)
C3—C2—C1118.81 (13)N5—C14—S1118.76 (10)
N4—C2—C1114.48 (11)C16—C15—C20120.20 (14)
C4—C3—C2120.16 (13)C16—C15—N5118.58 (13)
C4—C3—H3119.9C20—C15—N5121.10 (15)
C2—C3—H3119.9C15—C16—C17119.97 (15)
C3—C4—C5120.97 (13)C15—C16—H16120.0
C3—C4—H4119.5C17—C16—H16120.0
C5—C4—H4119.5C18—C17—C16120.07 (18)
C4—C5—C6119.67 (15)C18—C17—H17120.0
C4—C5—H5120.2C16—C17—H17120.0
C6—C5—H5120.2C19—C18—C17120.09 (15)
C5—C6—C1120.30 (13)C19—C18—H18120.0
C5—C6—H6119.9C17—C18—H18120.0
C1—C6—H6119.9C18—C19—C20120.80 (17)
N3—C7—C8120.17 (13)C18—C19—H19119.6
N3—C7—H7119.9C20—C19—H19119.6
C8—C7—H7119.9C15—C20—C19118.87 (18)
C9—C8—C13116.94 (12)C15—C20—H20120.6
C9—C8—C7119.16 (12)C19—C20—H20120.6
C13—C8—C7123.75 (13)O1—N1—O2124.14 (13)
C10—C9—C8121.91 (13)O1—N1—C11117.79 (14)
C10—C9—H9119.0O2—N1—C11118.06 (14)
C8—C9—H9119.0O3—N2—O4123.37 (15)
C11—C10—C9118.42 (14)O3—N2—C13118.34 (13)
C11—C10—H10120.8O4—N2—C13118.15 (13)
C9—C10—H10120.8C7—N3—C1118.79 (12)
C12—C11—C10122.65 (12)C14—N4—C2133.07 (11)
C12—C11—N1118.55 (13)C14—N4—H4A113.5
C10—C11—N1118.80 (14)C2—N4—H4A113.5
C11—C12—C13117.43 (13)C14—N5—C15128.38 (12)
C11—C12—H12121.3C14—N5—H5A115.8
C13—C12—H12121.3C15—N5—H5A115.8
C12—C13—C8122.50 (13)
C6—C1—C2—C36.0 (2)N5—C15—C16—C17−176.32 (14)
N3—C1—C2—C3−175.84 (12)C15—C16—C17—C18−0.2 (2)
C6—C1—C2—N4−173.89 (14)C16—C17—C18—C190.3 (3)
N3—C1—C2—N44.25 (18)C17—C18—C19—C20−0.2 (3)
N4—C2—C3—C4175.60 (15)C16—C15—C20—C190.3 (3)
C1—C2—C3—C4−4.3 (2)N5—C15—C20—C19176.38 (16)
C2—C3—C4—C5−0.2 (3)C18—C19—C20—C15−0.1 (3)
C3—C4—C5—C63.0 (3)C12—C11—N1—O1−179.74 (16)
C4—C5—C6—C1−1.2 (3)C10—C11—N1—O1−0.1 (2)
C2—C1—C6—C5−3.3 (2)C12—C11—N1—O20.8 (2)
N3—C1—C6—C5178.69 (15)C10—C11—N1—O2−179.62 (15)
N3—C7—C8—C9−20.9 (2)C12—C13—N2—O3−24.3 (2)
N3—C7—C8—C13163.79 (13)C8—C13—N2—O3157.70 (17)
C13—C8—C9—C102.3 (2)C12—C13—N2—O4151.72 (17)
C7—C8—C9—C10−173.30 (14)C8—C13—N2—O4−26.3 (2)
C8—C9—C10—C111.1 (2)C8—C7—N3—C1175.78 (12)
C9—C10—C11—C12−2.8 (2)C6—C1—N3—C7−31.3 (2)
C9—C10—C11—N1177.57 (13)C2—C1—N3—C7150.61 (13)
C10—C11—C12—C130.9 (2)N5—C14—N4—C2−175.70 (14)
N1—C11—C12—C13−179.52 (12)S1—C14—N4—C25.9 (2)
C11—C12—C13—C82.9 (2)C3—C2—N4—C142.5 (2)
C11—C12—C13—N2−175.14 (13)C1—C2—N4—C14−177.57 (14)
C9—C8—C13—C12−4.4 (2)N4—C14—N5—C155.2 (2)
C7—C8—C13—C12171.00 (13)S1—C14—N5—C15−176.34 (13)
C9—C8—C13—N2173.51 (13)C16—C15—N5—C14−121.98 (17)
C7—C8—C13—N2−11.1 (2)C20—C15—N5—C1461.8 (2)
C20—C15—C16—C17−0.1 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4A···N30.862.142.614 (2)114
C3—H3···S10.932.553.215 (2)128
C7—H7···O40.932.342.749 (3)106
N4—H4A···N30.862.142.614 (2)114
N5—H5A···S1i0.862.493.284 (2)155
C12—H12···O3ii0.932.573.397 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯N30.862.142.614 (2)114
C3—H3⋯S10.932.553.215 (2)128
N4—H4A⋯N30.862.142.614 (2)114
N5—H5A⋯S1i0.862.493.284 (2)155
C12—H12⋯O3ii0.932.573.397 (3)148

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
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2.  Synthesis and antitumor activity of optically active thiourea and their 2-aminobenzothiazole derivatives: a novel class of anticancer agents.

Authors:  S N Manjula; N Malleshappa Noolvi; K Vipan Parihar; S A Manohara Reddy; Vijay Ramani; Andanappa K Gadad; Gurdial Singh; N Gopalan Kutty; C Mallikarjuna Rao
Journal:  Eur J Med Chem       Date:  2008-12-16       Impact factor: 6.514

3.  1-{2-[(Anthracen-10-yl)methyl-ene-amino]phen-yl}-3-phenyl-thio-urea.

Authors:  D Gayathri; D Velmurugan; K Ravikumar; S Devaraj; M Kandaswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-09

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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