Literature DB >> 21577891

4-(2-Chloro-ethyl)morpholinium picrate.

Rajni Kant, Sabeta Kohli, Lovely Sarmal, B Narayana, S Samshuddin.   

Abstract

The title compound, C(6)H(13)ClNO(+)·C(6)H(2)N(3)O(7) (-), was synthesized from picric acid and 4-(2-chloro-ethyl)morpholine. The crystal structure is stabilized by C-H⋯O and N-H⋯O hydrogen-bond inter-actions.

Entities:  

Year:  2009        PMID: 21577891      PMCID: PMC2970397          DOI: 10.1107/S1600536809035405

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the homeopathic uses of the metal derivatives of picric acid, see: Maurya et al. (1999 ▶). For the medical applications of ammonium picrate, see: Boericke (1982 ▶) and of morpholine derivatives, see: Lutz et al. (1947 ▶); Hazard et al. (1948 ▶); Raymond et al. (1999 ▶). For a related structure, see: Briggs et al. (2004 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C6H13ClNO+·C6H2N3O7 − M = 378.72 Triclinic, a = 8.2063 (4) Å b = 9.3075 (5) Å c = 10.2896 (6) Å α = 93.954 (5)° β = 95.284 (5)° γ = 90.376 (4)° V = 780.65 (7) Å3 Z = 2 Mo Kα radiation μ = 0.30 mm−1 T = 293 K 0.30 × 0.24 × 0.18 mm

Data collection

Oxford Diffraction Xcalibur diffractometer Absorption correction: none 8478 measured reflections 4960 independent reflections 3665 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.179 S = 1.12 4960 reflections 286 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.85 e Å−3 Δρmin = −0.61 e Å−3 Data collection: CrysAlis Pro (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows(Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809035405/jh2096sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035405/jh2096Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H13ClNO+·C6H2N3O7Z = 2
Mr = 378.72F(000) = 392
Triclinic, P1Dx = 1.611 Mg m3
a = 8.2063 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.3075 (5) ÅCell parameters from 3665 reflections
c = 10.2896 (6) Åθ = 3.3–32.3°
α = 93.954 (5)°µ = 0.30 mm1
β = 95.284 (5)°T = 293 K
γ = 90.376 (4)°Rectangular, yellow
V = 780.65 (7) Å30.30 × 0.24 × 0.18 mm
Oxford Diffraction Xcalibur diffractometerRint = 0.016
ω–2θ scansθmax = 32.3°, θmin = 3.3°
8478 measured reflectionsh = −12→12
4960 independent reflectionsk = −8→13
3665 reflections with I > 2σ(I)l = −14→15
Refinement on F20 restraints
Least-squares matrix: full0 constraints
R[F2 > 2σ(F2)] = 0.058H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.179w = 1/[σ2(Fo2) + (0.0877P)2 + 0.2886P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
4960 reflectionsΔρmax = 0.85 e Å3
286 parametersΔρmin = −0.60 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
H8B−0.178 (3)−0.150 (3)0.786 (2)0.035 (6)*
H9B−0.286 (3)0.146 (3)0.883 (3)0.041 (6)*
H40.386 (3)0.587 (2)0.610 (2)0.033 (6)*
H9A−0.401 (3)0.024 (3)0.793 (2)0.036 (6)*
H10A−0.331 (3)0.311 (3)0.731 (2)0.039 (6)*
H20.299 (3)0.541 (3)0.972 (3)0.042 (7)*
H11A−0.135 (3)−0.023 (3)0.548 (2)0.040 (6)*
H12A−0.241 (3)0.215 (3)0.532 (3)0.049 (7)*
H8A−0.102 (3)−0.044 (2)0.887 (3)0.033 (6)*
H11B−0.300 (3)−0.076 (3)0.597 (2)0.037 (6)*
H7B0.087 (4)−0.208 (3)0.791 (3)0.058 (8)*
H12B−0.355 (4)0.101 (3)0.435 (3)0.055 (8)*
H7A0.069 (3)−0.121 (3)0.678 (3)0.052 (7)*
H10B−0.504 (4)0.259 (3)0.757 (3)0.052 (7)*
H4'−0.106 (3)0.125 (3)0.743 (2)0.037 (6)*
Cl0.22010 (6)0.00390 (7)0.83918 (7)0.0572 (2)
N4−0.18045 (17)0.05189 (15)0.73274 (15)0.0277 (3)
C8−0.1068 (2)−0.0703 (2)0.8042 (2)0.0333 (4)
C9−0.3282 (2)0.1067 (2)0.7962 (2)0.0343 (4)
O8−0.4535 (2)0.1794 (2)0.58892 (18)0.0535 (4)
C11−0.2318 (2)0.0085 (2)0.5915 (2)0.0365 (4)
C10−0.4054 (3)0.2269 (2)0.7217 (3)0.0469 (5)
C70.0592 (2)−0.1150 (2)0.7678 (2)0.0405 (4)
C12−0.3138 (3)0.1338 (3)0.5261 (2)0.0465 (5)
C50.2198 (2)0.43814 (18)0.62764 (19)0.0308 (3)
N20.47503 (19)0.70058 (17)0.84556 (19)0.0374 (4)
C20.2800 (2)0.51646 (19)0.8933 (2)0.0325 (4)
O10.0317 (2)0.25764 (19)0.67334 (16)0.0543 (5)
C40.3325 (2)0.54510 (18)0.6696 (2)0.0318 (4)
C30.3613 (2)0.58362 (18)0.80201 (19)0.0310 (4)
C10.1667 (2)0.40844 (18)0.85050 (19)0.0311 (4)
C60.1275 (2)0.35914 (19)0.71437 (19)0.0330 (4)
N30.0845 (2)0.34768 (17)0.95407 (18)0.0384 (4)
N10.1924 (2)0.40692 (18)0.48624 (17)0.0389 (4)
O50.5335 (2)0.76658 (17)0.76105 (19)0.0541 (4)
O2−0.0347 (2)0.2682 (2)0.92512 (19)0.0603 (5)
O40.5057 (2)0.73018 (19)0.96342 (19)0.0542 (4)
O30.1342 (2)0.3801 (2)1.06775 (18)0.0568 (5)
O70.0693 (3)0.3444 (3)0.4397 (2)0.0808 (7)
O60.2896 (3)0.4530 (3)0.4174 (2)0.0902 (8)
U11U22U33U12U13U23
Cl0.0304 (2)0.0661 (4)0.0743 (5)−0.0029 (2)0.0023 (2)0.0011 (3)
N40.0240 (6)0.0286 (6)0.0314 (7)−0.0047 (5)0.0033 (5)0.0069 (5)
C80.0287 (8)0.0346 (9)0.0378 (10)−0.0009 (7)0.0032 (7)0.0116 (7)
C90.0269 (8)0.0356 (9)0.0411 (10)−0.0010 (6)0.0065 (7)0.0041 (7)
O80.0401 (8)0.0624 (10)0.0567 (11)0.0076 (7)−0.0100 (7)0.0140 (8)
C110.0333 (9)0.0426 (10)0.0330 (9)−0.0036 (7)0.0009 (7)0.0027 (7)
C100.0431 (11)0.0402 (10)0.0573 (14)0.0088 (9)0.0011 (10)0.0067 (9)
C70.0340 (9)0.0425 (10)0.0449 (12)0.0056 (8)0.0033 (8)0.0012 (9)
C120.0446 (11)0.0585 (13)0.0362 (11)−0.0044 (10)−0.0058 (9)0.0152 (9)
C50.0287 (7)0.0271 (7)0.0367 (9)−0.0030 (6)0.0012 (6)0.0057 (6)
N20.0289 (7)0.0288 (7)0.0537 (11)−0.0048 (6)0.0011 (7)0.0009 (7)
C20.0306 (8)0.0285 (8)0.0382 (10)−0.0009 (6)0.0009 (7)0.0042 (7)
O10.0577 (10)0.0596 (10)0.0445 (9)−0.0371 (8)−0.0041 (7)0.0103 (7)
C40.0265 (7)0.0258 (7)0.0442 (10)−0.0024 (6)0.0056 (7)0.0089 (7)
C30.0261 (7)0.0242 (7)0.0425 (10)−0.0044 (6)0.0011 (7)0.0036 (7)
C10.0293 (8)0.0284 (7)0.0366 (9)−0.0038 (6)0.0041 (7)0.0083 (7)
C60.0282 (8)0.0305 (8)0.0409 (10)−0.0069 (6)0.0002 (7)0.0103 (7)
N30.0397 (8)0.0313 (7)0.0467 (10)−0.0014 (6)0.0122 (7)0.0101 (7)
N10.0435 (9)0.0361 (8)0.0369 (9)−0.0018 (7)0.0037 (7)0.0020 (7)
O50.0504 (9)0.0417 (8)0.0711 (12)−0.0223 (7)0.0093 (8)0.0074 (8)
O20.0626 (11)0.0575 (10)0.0627 (11)−0.0316 (8)0.0238 (9)−0.0016 (8)
O40.0494 (9)0.0505 (9)0.0590 (11)−0.0126 (7)−0.0051 (8)−0.0080 (8)
O30.0639 (11)0.0647 (11)0.0439 (9)−0.0126 (9)0.0067 (8)0.0163 (8)
O70.0923 (16)0.1001 (17)0.0461 (11)−0.0532 (14)−0.0013 (10)−0.0075 (10)
O60.0833 (15)0.142 (2)0.0462 (11)−0.0453 (16)0.0161 (10)0.0066 (13)
Cl—C71.788 (2)C12—H12A0.96 (3)
N4—C81.497 (2)C12—H12B0.99 (3)
N4—C111.503 (2)C5—C41.374 (2)
N4—C91.504 (2)C5—C61.455 (2)
N4—H4'0.91 (2)C5—N11.460 (3)
C8—C71.500 (3)N2—O41.228 (3)
C8—H8B0.94 (2)N2—O51.229 (2)
C8—H8A0.87 (3)N2—C31.449 (2)
C9—C101.510 (3)C2—C31.382 (3)
C9—H9B0.98 (3)C2—C11.386 (2)
C9—H9A0.97 (2)C2—H20.83 (3)
O8—C121.420 (3)O1—C61.250 (2)
O8—C101.426 (3)C4—C31.383 (3)
C11—C121.517 (3)C4—H40.89 (2)
C11—H11A0.98 (3)C1—C61.450 (3)
C11—H11B0.97 (2)C1—N31.456 (2)
C10—H10A0.98 (3)N3—O31.220 (2)
C10—H10B0.96 (3)N3—O21.225 (2)
C7—H7B0.93 (3)N1—O71.206 (3)
C7—H7A0.94 (3)N1—O61.210 (3)
C8—N4—C11112.20 (15)Cl—C7—H7A105.7 (17)
C8—N4—C9110.07 (14)H7B—C7—H7A103 (3)
C11—N4—C9108.38 (14)O8—C12—C11111.16 (18)
C8—N4—H4'106.9 (15)O8—C12—H12A106.5 (17)
C11—N4—H4'113.0 (15)C11—C12—H12A110.6 (16)
C9—N4—H4'106.1 (15)O8—C12—H12B106.1 (17)
N4—C8—C7115.12 (16)C11—C12—H12B108.8 (16)
N4—C8—H8B107.4 (14)H12A—C12—H12B113 (2)
C7—C8—H8B108.0 (14)C4—C5—C6124.17 (18)
N4—C8—H8A106.8 (16)C4—C5—N1116.02 (16)
C7—C8—H8A110.2 (15)C6—C5—N1119.80 (15)
H8B—C8—H8A109 (2)O4—N2—O5123.60 (17)
N4—C9—C10110.06 (17)O4—N2—C3118.95 (17)
N4—C9—H9B105.2 (15)O5—N2—C3117.44 (18)
C10—C9—H9B108.9 (15)C3—C2—C1118.96 (18)
N4—C9—H9A105.1 (14)C3—C2—H2120.0 (18)
C10—C9—H9A111.6 (14)C1—C2—H2121.0 (18)
H9B—C9—H9A116 (2)C5—C4—C3119.30 (16)
C12—O8—C10109.70 (17)C5—C4—H4118.7 (15)
N4—C11—C12109.86 (17)C3—C4—H4122.0 (15)
N4—C11—H11A109.0 (14)C2—C3—C4121.53 (16)
C12—C11—H11A111.4 (14)C2—C3—N2119.26 (17)
N4—C11—H11B102.7 (14)C4—C3—N2119.18 (16)
C12—C11—H11B116.2 (14)C2—C1—C6124.15 (16)
H11A—C11—H11B107 (2)C2—C1—N3114.57 (17)
O8—C10—C9111.16 (18)C6—C1—N3121.27 (15)
O8—C10—H10A113.2 (15)O1—C6—C1125.59 (17)
C9—C10—H10A109.7 (14)O1—C6—C5122.46 (18)
O8—C10—H10B105.5 (17)C1—C6—C5111.90 (15)
C9—C10—H10B111.4 (17)O3—N3—O2121.69 (18)
H10A—C10—H10B106 (2)O3—N3—C1118.95 (17)
C8—C7—Cl113.24 (15)O2—N3—C1119.35 (18)
C8—C7—H7B113.2 (19)O7—N1—O6121.2 (2)
Cl—C7—H7B107.2 (18)O7—N1—C5119.83 (18)
C8—C7—H7A114.0 (18)O6—N1—C5118.78 (18)
D—H···AD—HH···AD···AD—H···A
N4—H4'···O10.91 (3)1.89 (3)2.718 (2)151.2 (19)
N4—H4'···O20.91 (3)2.25 (2)2.896 (2)127.6 (17)
C2—H2···O30.83 (3)2.34 (3)2.637 (3)102 (2)
C2—H2···O40.83 (2)2.45 (2)2.723 (3)101 (2)
C4—H4···O60.90 (3)2.34 (3)2.667 (3)101.7 (15)
C7—H7A···O7i0.93 (3)2.54 (3)3.026 (3)113 (2)
C8—H8B···O5ii0.94 (3)2.47 (2)3.290 (2)146 (2)
C9—H9A···O5ii0.97 (3)2.45 (3)3.341 (2)154 (2)
C9—H9B···O20.97 (3)2.34 (3)2.985 (3)123 (2)
C12—H12A···O10.96 (3)2.57 (2)3.254 (3)129 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4′⋯O10.91 (3)1.89 (3)2.718 (2)151.2 (19)
N4—H4′⋯O20.91 (3)2.25 (2)2.896 (2)127.6 (17)
C2—H2⋯O30.83 (3)2.34 (3)2.637 (3)102 (2)
C2—H2⋯O40.83 (2)2.45 (2)2.723 (3)101 (2)
C4—H4⋯O60.90 (3)2.34 (3)2.667 (3)101.7 (15)
C7—H7A⋯O7i0.93 (3)2.54 (3)3.026 (3)113 (2)
C8—H8B⋯O5ii0.94 (3)2.47 (2)3.290 (2)146 (2)
C9—H9A⋯O5ii0.97 (3)2.45 (3)3.341 (2)154 (2)
C9—H9B⋯O20.97 (3)2.34 (3)2.985 (3)123 (2)
C12—H12A⋯O10.96 (3)2.57 (2)3.254 (3)129 (2)

Symmetry codes: (i) ; (ii) .

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Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

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Authors:  Caroline R S Briggs; Mark J Allen; David O'Hagan; David J Tozer; Alexandra M Z Slawin; Andrés E Goeta; Judith A K Howard
Journal:  Org Biomol Chem       Date:  2004-02-02       Impact factor: 3.876

3.  A short history of SHELX.

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