Literature DB >> 21577868

Pyridine-4-carboximidamidate chloride.

Ping Fan, Lei Wang, Huidong Zhang.   

Abstract

In the title salt, C(6)H(8)N(3) (+)·Cl(-), each pyridine-carbox-imid-amidate cation is linked to two symmetry-related cations through N-H⋯N hydrogen bonds, and to two chloride ions by N-H⋯Cl hydrogen bonds. The N-H⋯N hydrogen bonds involve the pyridine N atom and one NH(2) group. In the crystal, N-H⋯N and N-H⋯Cl hydrogen bonds extend the structure into two-dimensional layers. Weak C-H⋯Cl inter-actions further connect these layers into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21577868      PMCID: PMC2970348          DOI: 10.1107/S160053680903517X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background, see: Chudinov et al. (2005 ▶); Kamei et al. (2005 ▶).

Experimental

Crystal data

C6H8N3 +·Cl− M = 157.60 Orthorhombic, a = 7.3928 (13) Å b = 10.4467 (16) Å c = 18.925 (3) Å V = 1461.6 (4) Å3 Z = 8 Mo Kα radiation μ = 0.44 mm−1 T = 293 K 0.37 × 0.32 × 0.21 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.853, T max = 0.911 1949 measured reflections 1435 independent reflections 1215 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.092 S = 1.04 1435 reflections 124 parameters All H-atom parameters refined Δρmax = 0.23 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680903517X/bh2242sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903517X/bh2242Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H8N3+·ClF(000) = 656
Mr = 157.60Dx = 1.432 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 542 reflections
a = 7.3928 (13) Åθ = 2.3–22.8°
b = 10.4467 (16) ŵ = 0.44 mm1
c = 18.925 (3) ÅT = 293 K
V = 1461.6 (4) Å3Block, colourless
Z = 80.37 × 0.32 × 0.21 mm
Bruker SMART CCD area-detector diffractometer1435 independent reflections
Radiation source: fine-focus sealed tube1215 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −9→1
Tmin = 0.853, Tmax = 0.911k = −1→12
1949 measured reflectionsl = −23→1
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033All H-atom parameters refined
wR(F2) = 0.092w = 1/[σ2(Fo2) + (0.0416P)2 + 0.5489P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
1435 reflectionsΔρmax = 0.23 e Å3
124 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0056 (15)
xyzUiso*/Ueq
N10.0852 (2)0.38353 (14)0.75509 (8)0.0367 (4)
C10.0499 (3)0.36114 (17)0.82329 (10)0.0367 (4)
Cl10.15740 (8)0.91636 (4)1.05546 (2)0.0432 (2)
N20.0353 (2)0.79417 (15)0.89141 (9)0.0369 (4)
C20.0593 (3)0.45387 (17)0.87518 (9)0.0341 (4)
N30.1766 (3)0.66264 (17)0.97084 (9)0.0428 (4)
C30.1026 (2)0.57807 (15)0.85578 (9)0.0285 (4)
C40.1401 (3)0.60305 (17)0.78520 (9)0.0337 (4)
C50.1315 (3)0.50297 (18)0.73774 (9)0.0376 (4)
C60.1052 (2)0.68338 (16)0.90895 (9)0.0310 (4)
H40.171 (3)0.6863 (18)0.7679 (10)0.033 (5)*
H10.015 (3)0.275 (2)0.8348 (11)0.044 (6)*
H20.032 (3)0.4327 (18)0.9204 (11)0.041 (5)*
H50.159 (3)0.519 (2)0.6925 (12)0.048 (6)*
H2B0.037 (3)0.854 (2)0.9202 (13)0.060 (7)*
H2A−0.016 (3)0.803 (2)0.8500 (12)0.050 (6)*
H3B0.229 (4)0.590 (2)0.9833 (12)0.056 (7)*
H3A0.184 (3)0.732 (2)1.0012 (14)0.061 (7)*
U11U22U33U12U13U23
N10.0452 (9)0.0312 (8)0.0338 (8)0.0019 (7)0.0001 (7)−0.0051 (7)
C10.0439 (11)0.0261 (9)0.0400 (10)−0.0002 (8)−0.0007 (9)0.0007 (7)
Cl10.0580 (3)0.0357 (3)0.0359 (3)0.0007 (2)−0.0055 (2)−0.00566 (18)
N20.0484 (10)0.0262 (8)0.0360 (9)0.0009 (7)0.0006 (8)−0.0043 (7)
C20.0436 (11)0.0306 (9)0.0280 (9)0.0035 (8)0.0027 (8)0.0019 (7)
N30.0613 (12)0.0348 (9)0.0323 (8)0.0070 (8)−0.0090 (8)−0.0067 (7)
C30.0313 (9)0.0266 (8)0.0277 (8)0.0021 (7)−0.0020 (7)−0.0021 (7)
C40.0421 (10)0.0280 (9)0.0310 (9)−0.0020 (8)0.0003 (8)0.0024 (7)
C50.0488 (12)0.0377 (10)0.0264 (9)−0.0002 (8)0.0022 (8)−0.0012 (8)
C60.0348 (9)0.0280 (9)0.0300 (9)−0.0018 (7)0.0031 (7)−0.0020 (7)
N1—C51.335 (2)N3—C61.303 (2)
N1—C11.337 (2)N3—H3B0.89 (2)
C1—C21.381 (3)N3—H3A0.93 (3)
C1—H10.96 (2)C3—C41.389 (2)
N2—C61.310 (2)C3—C61.491 (2)
N2—H2B0.83 (3)C4—C51.380 (3)
N2—H2A0.88 (2)C4—H40.958 (19)
C2—C31.386 (2)C5—H50.90 (2)
C2—H20.91 (2)
C5—N1—C1116.80 (15)C2—C3—C4118.47 (16)
N1—C1—C2123.63 (17)C2—C3—C6120.99 (15)
N1—C1—H1115.7 (12)C4—C3—C6120.52 (15)
C2—C1—H1120.6 (12)C5—C4—C3118.33 (17)
C6—N2—H2B119.8 (17)C5—C4—H4118.5 (11)
C6—N2—H2A119.2 (15)C3—C4—H4123.2 (11)
H2B—N2—H2A121 (2)N1—C5—C4124.05 (17)
C1—C2—C3118.68 (16)N1—C5—H5118.2 (15)
C1—C2—H2119.3 (13)C4—C5—H5117.7 (15)
C3—C2—H2122.0 (13)N3—C6—N2122.31 (17)
C6—N3—H3B123.9 (15)N3—C6—C3119.28 (16)
C6—N3—H3A116.9 (16)N2—C6—C3118.41 (16)
H3B—N3—H3A119 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N1i0.88 (2)2.22 (2)3.058 (2)160 (2)
N3—H3A···Cl10.93 (2)2.19 (2)3.100 (2)167 (2)
N2—H2B···Cl10.83 (2)2.79 (2)3.476 (2)142 (2)
N3—H3B···Cl1ii0.89 (2)2.41 (2)3.270 (2)161 (2)
C5—H5···Cl1iii0.90 (2)2.68 (2)3.556 (2)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯N1i0.88 (2)2.22 (2)3.058 (2)160 (2)
N2—H2B⋯Cl10.83 (2)2.79 (2)3.476 (2)142 (2)
N3—H3A⋯Cl10.93 (2)2.19 (2)3.100 (2)167 (2)
N3—H3B⋯Cl1ii0.89 (2)2.41 (2)3.270 (2)161 (2)
C5—H5⋯Cl1iii0.90 (2)2.68 (2)3.556 (2)166 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  Pyridine-3-carboxamidinium chloride.

Authors:  Fei Liu; Fang Zhang; Qifan Chen; Huidong Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

2.  Pyridine-2-carboximidamidate chloride monohydrate.

Authors:  Qifan Chen; Huidong Zhang; Fang Zhang; Fei Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13
  2 in total

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