Literature DB >> 21577863

2,2'-(1,3,5,7-Tetra-oxo-1,2,3,5,6,7-hexa-hydro-pyrrolo[3,4-f]isoindole-2,6-di-yl)diacetic acid N,N-dimethyl-formamide disolvate.

Chunhua Ge1, Xiangqian Li, Xiangdong Zhang, Yang Zhao, Rui Zhang.   

Abstract

The asymmetric unit of the title compound, C(14)H(8)N(2)O(8)·2C(3)H(7)NO or L·2DMF (DMF = N,N-dimethyl-formamide), contains one half of the centrosymmetric mol-ecule L and one solvent mol-ecule, which is disordered between two orientations in a 0.555 (4):0.445 (4) ratio. Inter-molecular O-H⋯O hydrogen bonds link one L and two DMF mol-ecules into a centrosymmetric hydrogen-bonded cluster. The crystal packing is further stabilized by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577863      PMCID: PMC2970400          DOI: 10.1107/S1600536809035107

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For recent developments in the chemistry of naphthalene diimides, see Bhosale et al. (2008 ▶). For pyromellitic diimides, see: Gabriel & Iverson (2002 ▶); Ghosh & Ramakrishnan (2005 ▶); Kimizuka et al. (1995 ▶). For details of the synthesis, see Barooah et al. (2006 ▶).

Experimental

Crystal data

C14H8N2O8·2C3H7NO M = 478.42 Monoclinic, a = 7.7470 (15) Å b = 9.3100 (19) Å c = 16.334 (5) Å β = 104.02 (3)° V = 1143.0 (5) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.25 × 0.25 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.958, T max = 0.973 6227 measured reflections 2236 independent reflections 1910 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.111 S = 1.06 2236 reflections 166 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809035107/cv2607sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035107/cv2607Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H8N2O8·2C3H7NOF(000) = 500
Mr = 478.42Dx = 1.390 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 541 reflections
a = 7.7470 (15) Åθ = 2.5–22.7°
b = 9.3100 (19) ŵ = 0.11 mm1
c = 16.334 (5) ÅT = 293 K
β = 104.02 (3)°Block, colourless
V = 1143.0 (5) Å30.30 × 0.25 × 0.25 mm
Z = 2
Bruker SMART CCD area-detector diffractometer2236 independent reflections
Radiation source: fine-focus sealed tube1910 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scansθmax = 26.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.958, Tmax = 0.973k = −11→10
6227 measured reflectionsl = −20→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0528P)2 + 0.2565P] where P = (Fo2 + 2Fc2)/3
2236 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O30.46550 (18)0.49571 (11)0.66856 (7)0.0615 (3)
H3A0.41390.52380.62140.061*0.555 (4)
O40.48981 (19)0.29416 (13)0.59801 (7)0.0689 (4)
H4B0.43570.34230.55790.069*0.445 (4)
O10.86755 (14)0.43154 (15)0.88375 (8)0.0638 (4)
O20.27767 (14)0.31116 (13)0.79491 (7)0.0573 (3)
N10.58016 (15)0.35733 (14)0.82137 (7)0.0451 (3)
C10.51315 (19)0.36686 (16)0.66427 (9)0.0457 (3)
C20.6117 (2)0.29280 (17)0.74458 (10)0.0504 (4)
H2A0.57590.19280.74220.060*
H2B0.73830.29560.74760.060*
C30.71166 (19)0.42013 (16)0.88520 (9)0.0447 (3)
C40.41265 (18)0.35918 (15)0.84052 (9)0.0429 (3)
C50.43776 (17)0.43160 (14)0.92473 (8)0.0388 (3)
C60.31300 (17)0.46298 (15)0.97165 (9)0.0410 (3)
H60.19330.43900.95310.049*
C70.61865 (17)0.46738 (15)0.95191 (8)0.0390 (3)
N20.09136 (18)0.56664 (15)0.40440 (9)0.0545 (4)
C100.2173 (2)0.5240 (2)0.46976 (11)0.0592 (4)
H10A0.26620.43300.46910.071*0.555 (4)
H10B0.25830.58490.51550.071*0.445 (4)
C90.0213 (3)0.4691 (2)0.33408 (13)0.0726 (5)
H9A0.08390.37930.34390.109*
H9B0.03700.51100.28270.109*
H9C−0.10310.45290.32950.109*
C80.0168 (3)0.7115 (2)0.40126 (13)0.0707 (5)
H8A0.06620.76000.45360.106*
H8B−0.11010.70560.39250.106*
H8C0.04540.76400.35570.106*
O5A0.2757 (3)0.6081 (2)0.53640 (13)0.0644 (8)0.555 (4)
O5B0.2835 (4)0.3945 (3)0.46915 (17)0.0705 (11)0.445 (4)
U11U22U33U12U13U23
O30.0914 (9)0.0416 (6)0.0451 (6)0.0103 (6)0.0044 (6)−0.0013 (5)
O40.0965 (10)0.0517 (7)0.0497 (7)0.0094 (6)0.0004 (6)−0.0124 (5)
O10.0363 (6)0.0933 (9)0.0612 (7)−0.0030 (6)0.0105 (5)−0.0050 (6)
O20.0464 (6)0.0670 (7)0.0513 (6)−0.0117 (5)−0.0021 (5)−0.0040 (5)
N10.0416 (6)0.0520 (7)0.0393 (6)−0.0001 (5)0.0049 (5)0.0040 (5)
C10.0469 (8)0.0430 (8)0.0452 (8)−0.0043 (6)0.0074 (6)0.0013 (6)
C20.0553 (9)0.0465 (8)0.0478 (8)0.0061 (7)0.0096 (7)0.0031 (6)
C30.0373 (7)0.0499 (8)0.0432 (7)0.0010 (6)0.0025 (6)0.0091 (6)
C40.0407 (7)0.0417 (7)0.0413 (7)−0.0020 (6)0.0006 (6)0.0092 (6)
C50.0345 (7)0.0380 (7)0.0391 (7)−0.0020 (5)−0.0007 (5)0.0102 (5)
C60.0291 (6)0.0451 (7)0.0439 (7)−0.0036 (5)−0.0010 (5)0.0088 (6)
C70.0321 (7)0.0408 (7)0.0409 (7)0.0004 (5)0.0027 (5)0.0108 (6)
N20.0486 (7)0.0539 (8)0.0562 (8)0.0005 (6)0.0033 (6)0.0000 (6)
C100.0557 (10)0.0610 (10)0.0573 (10)0.0013 (8)0.0069 (8)0.0063 (8)
C90.0696 (12)0.0693 (12)0.0691 (12)0.0050 (10)−0.0019 (9)−0.0119 (9)
C80.0690 (12)0.0566 (10)0.0766 (12)0.0060 (9)−0.0016 (9)−0.0009 (9)
O5A0.0737 (15)0.0581 (13)0.0527 (13)0.0055 (11)−0.0016 (10)0.0063 (10)
O5B0.081 (2)0.069 (2)0.0497 (16)0.0120 (15)−0.0070 (13)0.0009 (13)
O3—C11.2621 (18)C6—C7i1.393 (2)
O3—H3A0.8200C6—H60.9300
O4—C11.2519 (18)C7—C6i1.393 (2)
O4—H4B0.8200N2—C101.321 (2)
O1—C31.2182 (18)N2—C91.462 (2)
O2—C41.2128 (17)N2—C81.463 (2)
N1—C31.3971 (19)C10—O5B1.311 (3)
N1—C41.4067 (19)C10—O5A1.328 (3)
N1—C21.464 (2)C10—H10A0.9300
C1—C21.515 (2)C10—H10B0.9300
C2—H2A0.9700C9—H9A0.9600
C2—H2B0.9700C9—H9B0.9600
C3—C71.510 (2)C9—H9C0.9600
C4—C51.502 (2)C8—H8A0.9600
C5—C61.402 (2)C8—H8B0.9600
C5—C71.4037 (19)C8—H8C0.9600
C1—O3—H3A109.5C6i—C7—C5121.85 (13)
C1—O4—H4B109.5C6i—C7—C3129.67 (12)
C3—N1—C4111.97 (12)C5—C7—C3108.48 (12)
C3—N1—C2124.62 (13)C10—N2—C9120.63 (15)
C4—N1—C2123.38 (13)C8—N2—C10120.88 (15)
O4—C1—O3125.38 (14)C9—N2—C8118.48 (14)
O4—C1—C2116.07 (13)O5B—C10—N2118.93 (19)
O3—C1—C2118.53 (13)O5B—C10—O5A119.5 (2)
N1—C2—C1113.67 (12)N2—C10—O5A121.58 (18)
N1—C2—H2A108.8N2—C10—H10A119.2
C1—C2—H2A108.8O5A—C10—H10A119.2
N1—C2—H2B108.8O5B—C10—H10B120.5
C1—C2—H2B108.8N2—C10—H10B120.5
H2A—C2—H2B107.7H10A—C10—H10B120.2
O1—C3—N1124.69 (14)N2—C9—H9A109.5
O1—C3—C7129.57 (14)N2—C9—H9B109.5
N1—C3—C7105.74 (12)H9A—C9—H9B109.5
O2—C4—N1124.30 (14)N2—C9—H9C109.5
O2—C4—C5128.99 (14)H9A—C9—H9C109.5
N1—C4—C5106.70 (11)H9B—C9—H9C109.5
C6—C5—C7123.04 (13)N2—C8—H8A109.5
C6—C5—C4129.85 (12)N2—C8—H8B109.5
C7—C5—C4107.11 (13)H8A—C8—H8B109.5
C7i—C6—C5115.11 (12)N2—C8—H8C109.5
C7i—C6—H6122.4H8A—C8—H8C109.5
C5—C6—H6122.4H8B—C8—H8C109.5
C3—N1—C2—C1−117.78 (16)N1—C4—C5—C7−0.77 (14)
C4—N1—C2—C164.21 (19)C7—C5—C6—C7i−0.1 (2)
O4—C1—C2—N1−158.82 (14)C4—C5—C6—C7i−179.65 (13)
O3—C1—C2—N122.9 (2)C6—C5—C7—C6i0.1 (2)
C4—N1—C3—O1179.90 (15)C4—C5—C7—C6i179.75 (12)
C2—N1—C3—O11.7 (2)C6—C5—C7—C3−178.94 (12)
C4—N1—C3—C7−0.18 (16)C4—C5—C7—C30.67 (14)
C2—N1—C3—C7−178.38 (12)O1—C3—C7—C6i0.6 (3)
C3—N1—C4—O2179.89 (14)N1—C3—C7—C6i−179.32 (13)
C2—N1—C4—O2−1.9 (2)O1—C3—C7—C5179.59 (15)
C3—N1—C4—C50.58 (15)N1—C3—C7—C5−0.33 (15)
C2—N1—C4—C5178.81 (12)C9—N2—C10—O5B2.6 (3)
O2—C4—C5—C6−0.5 (2)C8—N2—C8—O5B−178.4 (2)
N1—C4—C5—C6178.80 (13)C9—N2—C10—O5A−176.1 (2)
O2—C4—C5—C7179.96 (15)C8—N2—C8—O5A2.9 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O5A0.821.722.526 (2)166
O4—H4B···O5B0.821.702.496 (2)162
C2—H2A···O3ii0.972.413.230 (2)142
C6—H6···O1iii0.932.503.414 (2)166
C9—H9A···O2iv0.962.573.432 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O5A0.821.722.526 (2)166
O4—H4B⋯O5B0.821.702.496 (2)162
C2—H2A⋯O3i0.972.413.230 (2)142
C6—H6⋯O1ii0.932.503.414 (2)166
C9—H9A⋯O2iii0.962.573.432 (3)149

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  Small-molecule-induced folding of a synthetic polymer.

Authors:  Suhrit Ghosh; S Ramakrishnan
Journal:  Angew Chem Int Ed Engl       Date:  2005-08-26       Impact factor: 15.336

2.  Chemistry of naphthalene diimides.

Authors:  Sheshanath V Bhosale; Chintan H Jani; Steven J Langford
Journal:  Chem Soc Rev       Date:  2007-08-17       Impact factor: 54.564

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Aromatic oligomers that form hetero duplexes in aqueous solution.

Authors:  Gregory J Gabriel; Brent L Iverson
Journal:  J Am Chem Soc       Date:  2002-12-25       Impact factor: 15.419

  4 in total

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