Literature DB >> 21577854

Dimethyl 2,6-dimethyl-1,4-dihydro-pyridine-3,5-dicarboxyl-ate.

Zhenfeng Zhang, Dong Xian, Jiange Wang, Guisheng Zhang.   

Abstract

In the crystal of the title compound, C(11)H(15)NO(4), the mol-ecules are linked into sheets by N-H⋯O and C-H⋯O hydrogen bonds. Within the mol-ecule, the 1,4-dihydro-pyridine ring exhibits a distinctive planar conformation [r.m.s. deviation from the mean plane of 0.009 (3)Å], and the other non-H atoms are almost coplanar [r.m.s. deviation = 0.021 (3) Å] with the 1,4-dihydro-pyridine ring. The conformation of the latter is governed mainly by two intra-molecular C-H⋯O non-classical inter-actions.

Entities:  

Year:  2009        PMID: 21577854      PMCID: PMC2970369          DOI: 10.1107/S1600536809035478

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological activity of 1,4-dihydro­pyridine derivatives, see: Kazda & Towart (1981 ▶); Janis & Triggle (1983 ▶); Núñez-Vergara et al., (1998 ▶); Mak et al., (2002 ▶). For their synthesis, see: Hantzsch & Liebigs (1882 ▶). For related structures, see: Bai et al. (2009 ▶); Quesada et al. (2006 ▶); Ramesh et al. (2008 ▶); Zhao & Teng (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H15NO4 M = 225.24 Triclinic, a = 7.3933 (13) Å b = 7.8391 (14) Å c = 11.1847 (19) Å α = 75.977 (2)° β = 75.274 (2)° γ = 64.351 (2)° V = 558.62 (17) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.49 × 0.43 × 0.25 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.952, T max = 0.965 3550 measured reflections 2047 independent reflections 1764 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.115 S = 1.05 2047 reflections 148 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809035478/rk2162sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035478/rk2162Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H15NO4Z = 2
Mr = 225.24F(000) = 240
Triclinic, P1Dx = 1.339 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3933 (13) ÅCell parameters from 2071 reflections
b = 7.8391 (14) Åθ = 2.9–28.1°
c = 11.1847 (19) ŵ = 0.10 mm1
α = 75.977 (2)°T = 293 K
β = 75.274 (2)°Block, blue
γ = 64.351 (2)°0.49 × 0.43 × 0.25 mm
V = 558.62 (17) Å3
Bruker SMART CCD diffractometer2047 independent reflections
Radiation source: fine-focus sealed tube1764 reflections with I > 2σ(I)
graphiteRint = 0.015
φ and ω scansθmax = 25.5°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −8→8
Tmin = 0.952, Tmax = 0.965k = −9→9
3550 measured reflectionsl = −12→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.115w = 1/[σ2(Fo2) + (0.0612P)2 + 0.1212P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2047 reflectionsΔρmax = 0.16 e Å3
148 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.26 (2)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C1−0.2092 (2)0.24631 (19)0.60198 (13)0.0371 (3)
C2−0.0517 (2)0.24220 (18)0.64524 (13)0.0355 (3)
C30.1441 (2)0.2394 (2)0.55870 (13)0.0366 (3)
H3A0.17020.34630.56770.044*
H3B0.25610.12240.58370.044*
C40.13729 (19)0.25116 (18)0.42266 (12)0.0328 (3)
C5−0.0262 (2)0.25369 (18)0.38665 (12)0.0348 (3)
C6−0.4103 (2)0.2499 (3)0.67563 (16)0.0519 (4)
H6A−0.49250.25280.62040.078*0.50
H6B−0.47870.36180.71610.078*0.50
H6C−0.38880.13740.73760.078*0.50
H6D−0.41420.24850.76230.078*0.50
H6E−0.42800.13960.66660.078*0.50
H6F−0.51780.36390.64520.078*0.50
C7−0.0548 (2)0.2638 (2)0.25662 (14)0.0467 (4)
H7A−0.18550.26330.25960.070*0.50
H7B0.05020.15530.22090.070*0.50
H7C−0.04740.37940.20620.070*0.50
H7D0.06370.26870.19820.070*0.50
H7E−0.17200.37670.23690.070*0.50
H7F−0.07440.15260.25160.070*0.50
C8−0.0642 (2)0.2376 (2)0.77872 (14)0.0430 (4)
C90.3211 (2)0.25935 (19)0.33790 (13)0.0359 (3)
C100.1095 (4)0.2341 (3)0.93016 (16)0.0699 (6)
H10A−0.00840.33840.96210.105*
H10B0.23030.24700.93580.105*
H10C0.10840.11520.97840.105*
C110.5033 (3)0.2757 (3)0.13100 (16)0.0647 (5)
H11A0.51800.39110.13200.097*
H11B0.49250.27200.04800.097*
H11C0.61990.16690.15630.097*
N1−0.19256 (17)0.24966 (18)0.47535 (11)0.0401 (3)
H1−0.29310.24920.45040.048*
O10.10679 (18)0.23698 (18)0.80131 (9)0.0537 (3)
O2−0.2029 (2)0.2326 (2)0.86306 (11)0.0705 (4)
O30.32231 (16)0.27138 (19)0.21605 (10)0.0547 (3)
O40.46494 (15)0.25501 (17)0.37415 (10)0.0499 (3)
U11U22U33U12U13U23
C10.0345 (7)0.0403 (7)0.0361 (7)−0.0168 (6)−0.0018 (6)−0.0055 (5)
C20.0353 (7)0.0396 (7)0.0318 (7)−0.0161 (6)−0.0029 (5)−0.0060 (5)
C30.0323 (7)0.0479 (8)0.0329 (7)−0.0183 (6)−0.0047 (5)−0.0082 (6)
C40.0314 (7)0.0376 (7)0.0307 (7)−0.0148 (5)−0.0047 (5)−0.0062 (5)
C50.0341 (7)0.0384 (7)0.0338 (7)−0.0161 (5)−0.0059 (5)−0.0052 (5)
C60.0397 (8)0.0718 (11)0.0470 (9)−0.0287 (7)0.0017 (7)−0.0108 (7)
C70.0443 (8)0.0679 (10)0.0366 (8)−0.0290 (7)−0.0102 (6)−0.0063 (7)
C80.0458 (8)0.0471 (8)0.0353 (8)−0.0201 (6)−0.0011 (6)−0.0077 (6)
C90.0329 (7)0.0415 (7)0.0341 (7)−0.0157 (6)−0.0052 (5)−0.0058 (5)
C100.0973 (15)0.0926 (14)0.0354 (9)−0.0492 (12)−0.0171 (9)−0.0088 (8)
C110.0512 (10)0.1089 (15)0.0386 (9)−0.0428 (10)0.0079 (7)−0.0144 (9)
N10.0324 (6)0.0575 (7)0.0369 (7)−0.0239 (5)−0.0061 (5)−0.0066 (5)
O10.0599 (7)0.0802 (8)0.0319 (6)−0.0359 (6)−0.0090 (5)−0.0106 (5)
O20.0668 (8)0.1125 (11)0.0357 (6)−0.0465 (8)0.0095 (6)−0.0153 (6)
O30.0457 (6)0.0966 (9)0.0316 (6)−0.0411 (6)0.0011 (4)−0.0101 (5)
O40.0356 (6)0.0772 (8)0.0430 (6)−0.0284 (5)−0.0049 (4)−0.0103 (5)
C1—C21.356 (2)C7—H7B0.9600
C1—N11.3848 (18)C7—H7C0.9600
C1—C61.4976 (19)C7—H7D0.9600
C2—C81.465 (2)C7—H7E0.9600
C2—C31.5172 (18)C7—H7F0.9600
C3—C41.5142 (18)C8—O21.2114 (19)
C3—H3A0.9700C8—O11.3489 (19)
C3—H3B0.9700C9—O41.2154 (17)
C4—C51.3587 (19)C9—O31.3411 (17)
C4—C91.4634 (18)C10—O11.4410 (19)
C5—N11.3771 (17)C10—H10A0.9600
C5—C71.5007 (19)C10—H10B0.9600
C6—H6A0.9600C10—H10C0.9600
C6—H6B0.9600C11—O31.4396 (18)
C6—H6C0.9600C11—H11A0.9600
C6—H6D0.9600C11—H11B0.9600
C6—H6E0.9600C11—H11C0.9600
C6—H6F0.9600N1—H10.8600
C7—H7A0.9600
C2—C1—N1119.37 (12)C5—C7—H7C109.5
C2—C1—C6127.69 (13)H7A—C7—H7C109.5
N1—C1—C6112.93 (12)H7B—C7—H7C109.5
C1—C2—C8120.67 (12)C5—C7—H7D109.5
C1—C2—C3121.77 (12)H7A—C7—H7D141.1
C8—C2—C3117.56 (12)H7B—C7—H7D56.3
C4—C3—C2112.94 (11)H7C—C7—H7D56.3
C4—C3—H3A109.0C5—C7—H7E109.5
C2—C3—H3A109.0H7A—C7—H7E56.3
C4—C3—H3B109.0H7B—C7—H7E141.1
C2—C3—H3B109.0H7C—C7—H7E56.3
H3A—C3—H3B107.8H7D—C7—H7E109.5
C5—C4—C9124.99 (12)C5—C7—H7F109.5
C5—C4—C3121.76 (12)H7A—C7—H7F56.3
C9—C4—C3113.25 (11)H7B—C7—H7F56.3
C4—C5—N1119.50 (12)H7C—C7—H7F141.1
C4—C5—C7127.93 (12)H7D—C7—H7F109.5
N1—C5—C7112.57 (11)H7E—C7—H7F109.5
C1—C6—H6A109.5O2—C8—O1121.07 (14)
C1—C6—H6B109.5O2—C8—C2127.86 (15)
H6A—C6—H6B109.5O1—C8—C2111.06 (12)
C1—C6—H6C109.5O4—C9—O3121.45 (12)
H6A—C6—H6C109.5O4—C9—C4122.90 (13)
H6B—C6—H6C109.5O3—C9—C4115.65 (11)
C1—C6—H6D109.5O1—C10—H10A109.5
H6A—C6—H6D141.1O1—C10—H10B109.5
H6B—C6—H6D56.3H10A—C10—H10B109.5
H6C—C6—H6D56.3O1—C10—H10C109.5
C1—C6—H6E109.5H10A—C10—H10C109.5
H6A—C6—H6E56.3H10B—C10—H10C109.5
H6B—C6—H6E141.1O3—C11—H11A109.5
H6C—C6—H6E56.3O3—C11—H11B109.5
H6D—C6—H6E109.5H11A—C11—H11B109.5
C1—C6—H6F109.5O3—C11—H11C109.5
H6A—C6—H6F56.3H11A—C11—H11C109.5
H6B—C6—H6F56.3H11B—C11—H11C109.5
H6C—C6—H6F141.1C5—N1—C1124.57 (11)
H6D—C6—H6F109.5C5—N1—H1117.7
H6E—C6—H6F109.5C1—N1—H1117.7
C5—C7—H7A109.5C8—O1—C10115.57 (13)
C5—C7—H7B109.5C9—O3—C11116.70 (12)
H7A—C7—H7B109.5
N1—C1—C2—C8−179.68 (12)C1—C2—C8—O1−179.05 (12)
C6—C1—C2—C81.0 (2)C3—C2—C8—O11.79 (18)
N1—C1—C2—C3−0.6 (2)C5—C4—C9—O4−179.32 (13)
C6—C1—C2—C3−179.85 (13)C3—C4—C9—O40.73 (19)
C1—C2—C3—C42.74 (19)C5—C4—C9—O30.4 (2)
C8—C2—C3—C4−178.11 (11)C3—C4—C9—O3−179.52 (11)
C2—C3—C4—C5−3.18 (18)C4—C5—N1—C11.1 (2)
C2—C3—C4—C9176.77 (11)C7—C5—N1—C1−177.92 (12)
C9—C4—C5—N1−178.51 (12)C2—C1—N1—C5−1.6 (2)
C3—C4—C5—N11.4 (2)C6—C1—N1—C5177.80 (12)
C9—C4—C5—C70.4 (2)O2—C8—O1—C10−1.3 (2)
C3—C4—C5—C7−179.65 (13)C2—C8—O1—C10179.51 (13)
C1—C2—C8—O21.8 (2)O4—C9—O3—C111.0 (2)
C3—C2—C8—O2−177.38 (15)C4—C9—O3—C11−178.77 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4i0.862.153.006 (2)176
C11—H11B···O2ii0.962.603.219 (2)122
C6—H6D···O20.962.092.843 (2)134
C7—H7D···O30.961.982.733 (2)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.862.153.006 (2)176
C11—H11B⋯O2ii0.962.603.219 (2)122
C6—H6D⋯O20.962.092.843 (2)134
C7—H7D⋯O30.961.982.733 (2)134

Symmetry codes: (i) ; (ii) .

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