Literature DB >> 21577846

N,N-Bis(2-thienylmethyl-ene)cyclo-hexane-1,4-diamine.

Kyung-Eun Lee1, Soon W Lee.   

Abstract

The title compound, C(16)H(18)N(2)S(2), lies about an inversion center with only half of the mol-ecule in the asymmetric unit. The cyclo-hexane ring adopts a chair conformation, and the terminal thio-phene rings are in a transoid orientation, with an S⋯S separation between the two terminal 2-thio-phene rings of 11.6733 (9) Å.

Entities:  

Year:  2009        PMID: 21577846      PMCID: PMC2970409          DOI: 10.1107/S1600536809035545

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a general introduction to coordination polymers, see: Batten et al. (2009 ▶); Perry et al. (2009 ▶); Robin & Fromm (2006 ▶). For structurally related compounds, see: Yun et al. (2009 ▶). For related linking ligands containing terminal thio­phene rings, see: Lee & Lee (2007 ▶); Huh et al. (2008 ▶); Kim & Lee (2008 ▶).

Experimental

Crystal data

C16H18N2S2 M = 302.44 Monoclinic, a = 6.2173 (4) Å b = 7.4999 (5) Å c = 17.1289 (12) Å β = 97.047 (3)° V = 792.67 (9) Å3 Z = 2 Mo Kα radiation μ = 0.33 mm−1 T = 296 K 0.46 × 0.24 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.864, T max = 0.937 9045 measured reflections 1889 independent reflections 1590 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.089 S = 1.02 1889 reflections 127 parameters All H-atom parameters refined Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809035545/pv2205sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035545/pv2205Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18N2S2F(000) = 320
Mr = 302.44Dx = 1.267 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5365 reflections
a = 6.2173 (4) Åθ = 2.4–28.2°
b = 7.4999 (5) ŵ = 0.33 mm1
c = 17.1289 (12) ÅT = 296 K
β = 97.047 (3)°Block, colourless
V = 792.67 (9) Å30.46 × 0.24 × 0.20 mm
Z = 2
Bruker SMART CCD area-detector diffractometer1889 independent reflections
Radiation source: sealed tube1590 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 28.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.864, Tmax = 0.937k = −8→9
9045 measured reflectionsl = −22→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089All H-atom parameters refined
S = 1.02w = 1/[σ2(Fo2) + (0.0484P)2 + 0.1406P] where P = (Fo2 + 2Fc2)/3
1889 reflections(Δ/σ)max = 0.001
127 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.18 e Å3
Experimental. IR (KBr, cm-1): 3443 (w), 3103 (w), 2923 (m), 2852 (w), 1626 (s), 1430 (m), 1306 (w), 1210 (m), 1084 (m), 944 (m), 847 (m), 730 (s), 498 (m).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.65706 (5)0.42717 (5)0.78995 (2)0.04947 (14)
N10.78346 (18)0.71526 (15)0.91441 (7)0.0458 (3)
C10.4495 (3)0.2897 (2)0.75469 (10)0.0554 (4)
C20.2791 (3)0.3032 (2)0.79591 (10)0.0575 (4)
C30.3138 (2)0.42688 (19)0.85814 (9)0.0488 (3)
C40.51420 (19)0.50601 (18)0.86246 (7)0.0396 (3)
C50.6024 (2)0.64140 (18)0.91770 (7)0.0412 (3)
C60.8511 (2)0.85271 (18)0.97279 (8)0.0430 (3)
C70.8308 (3)1.0366 (2)0.93470 (10)0.0527 (4)
C81.0844 (2)0.8189 (2)1.00708 (10)0.0516 (3)
H10.465 (3)0.218 (2)0.7107 (11)0.069 (5)*
H20.157 (3)0.239 (3)0.7840 (10)0.070 (5)*
H30.218 (2)0.4550 (19)0.8910 (10)0.051 (4)*
H50.518 (2)0.6691 (19)0.9570 (9)0.050 (4)*
H60.761 (2)0.847 (2)1.0152 (9)0.053 (4)*
H7A0.687 (3)1.058 (2)0.9140 (12)0.074 (6)*
H7B0.909 (3)1.037 (2)0.8896 (11)0.061 (5)*
H8B1.176 (3)0.821 (2)0.9662 (10)0.056 (4)*
H8A1.104 (3)0.705 (2)1.0311 (10)0.059 (4)*
U11U22U33U12U13U23
S10.0449 (2)0.0531 (2)0.0512 (2)−0.00126 (14)0.00905 (15)−0.00792 (15)
N10.0473 (6)0.0465 (6)0.0443 (6)−0.0070 (5)0.0087 (5)−0.0088 (5)
C10.0617 (9)0.0484 (8)0.0545 (8)−0.0023 (7)0.0005 (7)−0.0112 (7)
C20.0523 (8)0.0552 (9)0.0631 (9)−0.0150 (7)−0.0003 (7)−0.0052 (7)
C30.0445 (7)0.0532 (8)0.0491 (7)−0.0066 (6)0.0077 (6)−0.0008 (6)
C40.0400 (6)0.0389 (6)0.0393 (6)0.0006 (5)0.0035 (5)0.0025 (5)
C50.0418 (6)0.0428 (7)0.0389 (6)0.0016 (5)0.0051 (5)0.0000 (5)
C60.0450 (7)0.0441 (7)0.0407 (6)−0.0041 (5)0.0084 (5)−0.0076 (6)
C70.0531 (8)0.0492 (8)0.0518 (8)0.0023 (6)−0.0091 (7)−0.0035 (6)
C80.0544 (8)0.0397 (8)0.0584 (9)0.0050 (6)−0.0030 (7)−0.0044 (6)
S1—C11.7038 (16)C5—H50.928 (15)
S1—C41.7181 (13)C6—C81.518 (2)
N1—C51.2619 (16)C6—C71.524 (2)
N1—C61.4616 (16)C6—H60.971 (16)
C1—C21.347 (2)C7—C8i1.522 (2)
C1—H10.941 (18)C7—H7A0.94 (2)
C2—C31.410 (2)C7—H7B0.960 (19)
C2—H20.900 (18)C8—C7i1.522 (2)
C3—C41.3736 (18)C8—H8B0.954 (16)
C3—H30.894 (15)C8—H8A0.951 (17)
C4—C51.4492 (19)
C1—S1—C491.62 (7)N1—C6—C7110.09 (11)
C5—N1—C6117.53 (11)C8—C6—C7109.96 (12)
C2—C1—S1112.26 (12)N1—C6—H6109.6 (9)
C2—C1—H1129.0 (11)C8—C6—H6108.2 (9)
S1—C1—H1118.7 (11)C7—C6—H6109.8 (9)
C1—C2—C3112.85 (14)C8i—C7—C6111.09 (12)
C1—C2—H2122.3 (11)C8i—C7—H7A111.4 (11)
C3—C2—H2124.8 (11)C6—C7—H7A110.0 (11)
C4—C3—C2112.27 (13)C8i—C7—H7B111.0 (11)
C4—C3—H3122.4 (10)C6—C7—H7B108.7 (10)
C2—C3—H3125.3 (10)H7A—C7—H7B104.5 (15)
C3—C4—C5127.31 (12)C6—C8—C7i111.86 (12)
C3—C4—S1110.99 (11)C6—C8—H8B109.9 (10)
C5—C4—S1121.69 (9)C7i—C8—H8B106.4 (10)
N1—C5—C4123.14 (12)C6—C8—H8A112.4 (10)
N1—C5—H5121.5 (10)C7i—C8—H8A110.0 (10)
C4—C5—H5115.3 (10)H8B—C8—H8A106.0 (13)
N1—C6—C8109.16 (11)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design and synthesis of metal-organic frameworks using metal-organic polyhedra as supermolecular building blocks.

Authors:  John J Perry; Jason A Perman; Michael J Zaworotko
Journal:  Chem Soc Rev       Date:  2009-03-03       Impact factor: 54.564

  2 in total

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