Literature DB >> 21577844

6-Hydroxy-salvinolone.

Abdul Wahab Salae, Suchada Chantrapromma, Hoong-Kun Fun, Chatchanok Karalai.   

Abstract

The title compound {systematic name: 5,6,10-trihydr-oxy-7-iso-propyl-1,1,4a-trimethyl-2,3,4,4a-tetra-hydro-phenanthren-9(1H)-one}, C(20)H(26)O(4), is a diterpenoid which was isolated from the roots of Premna obtusifolia. The mol-ecule has three fused six-membered rings; the cyclo-hexane ring is in a twisted-boat conformation and the cyclo-hexene ring adopts a sofa form. Intra-molecular O-H⋯O hydrogen bonds generate two S(5) ring motifs. In the crystal, mol-ecules are linked into infinite one-dimensional chains along the [001] direction by O-H⋯O hydrogen bonds and weak C-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21577844      PMCID: PMC2970173          DOI: 10.1107/S1600536809034990

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrogen bond motifs, see: Bernstein et al. (1995 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶). For background to diterpenes and their activities, see: Fraga et al. (2005 ▶); Hueso-Rodríguez et al. (1983 ▶); Topcu & Ulubelen (1996 ▶). For the stability of the temperature controller used in the data collection, see Cosier & Glazer, (1986 ▶).

Experimental

Crystal data

C20H26O4 M = 330.41 Orthorhombic, a = 9.4946 (1) Å b = 13.1716 (1) Å c = 13.8124 (1) Å V = 1727.37 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.35 × 0.30 × 0.27 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.970, T max = 0.977 36584 measured reflections 3890 independent reflections 3530 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.114 S = 1.09 3890 reflections 230 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034990/sj2639sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034990/sj2639Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H26O4F(000) = 712
Mr = 330.41Dx = 1.271 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3890 reflections
a = 9.4946 (1) Åθ = 2.1–34.0°
b = 13.1716 (1) ŵ = 0.09 mm1
c = 13.8124 (1) ÅT = 100 K
V = 1727.37 (3) Å3Block, colourless
Z = 40.35 × 0.30 × 0.27 mm
Bruker APEXII CCD area-detector diffractometer3890 independent reflections
Radiation source: sealed tube3530 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 34.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −14→14
Tmin = 0.970, Tmax = 0.977k = −20→19
36584 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.065P)2 + 0.2832P] where P = (Fo2 + 2Fc2)/3
3890 reflections(Δ/σ)max = 0.001
230 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.41 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.26452 (14)0.14460 (7)0.64485 (7)0.0216 (2)
H1O10.269 (3)0.2000 (18)0.6119 (16)0.041 (7)*
O20.25851 (15)0.33755 (7)0.66826 (6)0.0238 (2)
O30.24282 (12)0.46627 (7)1.11140 (6)0.01532 (17)
H1O30.24340.52851.11120.023*
O40.25735 (12)0.27209 (7)1.09834 (6)0.01710 (18)
H1O40.255 (3)0.3196 (17)1.1358 (17)0.036 (6)*
C10.14764 (15)0.10997 (9)0.98617 (9)0.0161 (2)
H1A0.18680.10471.05090.019*
H1B0.06730.15530.98950.019*
C20.09602 (14)0.00517 (10)0.95499 (9)0.0168 (2)
H2A0.0690−0.03331.01190.020*
H2B0.01320.01290.91450.020*
C30.20820 (14)−0.05358 (9)0.89937 (9)0.0152 (2)
H3A0.1749−0.12190.88680.018*
H3B0.2931−0.05830.93820.018*
C40.24219 (15)−0.00022 (9)0.80244 (8)0.01321 (19)
C50.24938 (13)0.11553 (8)0.81616 (8)0.01206 (19)
C60.25713 (15)0.17857 (9)0.73871 (8)0.0149 (2)
C70.25656 (15)0.28915 (9)0.74601 (8)0.0148 (2)
C80.25181 (14)0.33614 (8)0.84122 (7)0.01221 (19)
C90.25195 (13)0.27427 (8)0.92386 (7)0.01059 (18)
C100.26085 (13)0.15838 (8)0.91835 (8)0.01090 (18)
C110.25257 (14)0.32476 (8)1.01300 (8)0.01188 (19)
C120.24742 (13)0.43145 (8)1.01841 (7)0.01168 (19)
C130.24969 (14)0.49232 (9)0.93547 (8)0.01231 (19)
C140.25199 (14)0.44240 (9)0.84711 (8)0.0138 (2)
H14A0.25370.48030.79030.017*
C150.24938 (15)0.60771 (8)0.94329 (8)0.0140 (2)
H15A0.30630.62600.99990.017*
C160.3149 (2)0.65916 (11)0.85549 (11)0.0284 (3)
H16A0.40400.62810.84130.043*
H16B0.32870.73000.86900.043*
H16C0.25330.65190.80080.043*
C170.09920 (15)0.64681 (10)0.96124 (11)0.0208 (3)
H17A0.10120.71920.96920.031*
H17B0.06200.61591.01880.031*
H17C0.04060.62970.90700.031*
C180.12286 (15)−0.02886 (11)0.73086 (10)0.0202 (3)
H18A0.14130.00140.66890.030*
H18B0.0345−0.00440.75530.030*
H18C0.1189−0.10130.72410.030*
C190.38326 (14)−0.04045 (10)0.76210 (10)0.0184 (2)
H19A0.4574−0.02580.80720.028*
H19B0.4032−0.00800.70140.028*
H19C0.3768−0.11250.75260.028*
C200.41271 (13)0.13255 (10)0.95434 (9)0.0154 (2)
H20A0.48050.16080.91040.023*
H20B0.42420.06020.95700.023*
H20C0.42670.16081.01770.023*
U11U22U33U12U13U23
O10.0436 (6)0.0122 (4)0.0090 (3)0.0012 (5)0.0006 (4)−0.0013 (3)
O20.0489 (6)0.0129 (4)0.0097 (3)0.0008 (5)0.0007 (4)0.0023 (3)
O30.0266 (4)0.0104 (4)0.0090 (3)−0.0009 (4)0.0012 (3)−0.0018 (3)
O40.0305 (5)0.0127 (4)0.0081 (3)0.0004 (4)−0.0006 (4)0.0015 (3)
C10.0209 (5)0.0107 (5)0.0166 (5)−0.0020 (4)0.0060 (4)0.0002 (4)
C20.0184 (5)0.0138 (5)0.0183 (5)−0.0026 (4)0.0044 (4)−0.0001 (4)
C30.0205 (5)0.0093 (5)0.0160 (5)−0.0002 (4)0.0013 (4)0.0009 (4)
C40.0177 (5)0.0087 (4)0.0132 (4)0.0010 (4)−0.0008 (4)−0.0007 (3)
C50.0156 (5)0.0094 (4)0.0112 (4)0.0009 (5)−0.0005 (4)−0.0001 (3)
C60.0245 (5)0.0103 (5)0.0100 (4)0.0006 (5)−0.0002 (4)−0.0013 (3)
C70.0248 (6)0.0100 (4)0.0096 (4)0.0009 (5)−0.0003 (4)0.0003 (3)
C80.0179 (5)0.0098 (4)0.0089 (4)0.0006 (5)−0.0001 (4)0.0001 (3)
C90.0141 (4)0.0084 (4)0.0093 (4)0.0002 (4)0.0002 (4)0.0002 (3)
C100.0140 (4)0.0088 (4)0.0100 (4)0.0003 (4)−0.0003 (4)0.0007 (3)
C110.0160 (5)0.0105 (4)0.0091 (4)0.0000 (5)0.0000 (4)0.0006 (3)
C120.0152 (5)0.0104 (4)0.0095 (4)0.0006 (5)0.0001 (4)−0.0011 (3)
C130.0167 (4)0.0097 (4)0.0106 (4)0.0003 (4)0.0001 (4)0.0003 (3)
C140.0217 (5)0.0095 (4)0.0100 (4)−0.0001 (5)0.0002 (4)0.0001 (3)
C150.0223 (5)0.0077 (4)0.0121 (4)0.0001 (5)0.0018 (4)0.0000 (3)
C160.0519 (10)0.0117 (5)0.0215 (6)0.0005 (6)0.0146 (6)0.0016 (5)
C170.0232 (6)0.0134 (5)0.0259 (6)0.0024 (5)−0.0017 (5)−0.0024 (5)
C180.0257 (6)0.0155 (6)0.0194 (5)−0.0024 (5)−0.0048 (5)−0.0027 (5)
C190.0232 (6)0.0130 (5)0.0189 (5)0.0031 (5)0.0045 (5)−0.0007 (4)
C200.0164 (5)0.0130 (5)0.0168 (5)0.0017 (4)−0.0034 (4)−0.0003 (4)
O1—C61.3733 (14)C9—C111.3993 (15)
O1—H1O10.86 (2)C9—C101.5307 (16)
O2—C71.2490 (14)C10—C201.5626 (17)
O3—C121.3645 (13)C11—C121.4081 (15)
O3—H1O30.8200C12—C131.3984 (15)
O4—C111.3685 (13)C13—C141.3864 (15)
O4—H1O40.81 (2)C13—C151.5237 (16)
C1—C21.5268 (18)C14—H14A0.9300
C1—C101.5619 (17)C15—C161.5222 (18)
C1—H1A0.9700C15—C171.5362 (19)
C1—H1B0.9700C15—H15A0.9800
C2—C31.5242 (18)C16—H16A0.9600
C2—H2A0.9700C16—H16B0.9600
C2—H2B0.9700C16—H16C0.9600
C3—C41.5462 (17)C17—H17A0.9600
C3—H3A0.9700C17—H17B0.9600
C3—H3B0.9700C17—H17C0.9600
C4—C51.5378 (16)C18—H18A0.9600
C4—C191.5444 (19)C18—H18B0.9600
C4—C181.5504 (18)C18—H18C0.9600
C5—C61.3562 (16)C19—H19A0.9600
C5—C101.5240 (15)C19—H19B0.9600
C6—C71.4600 (16)C19—H19C0.9600
C7—C81.4542 (15)C20—H20A0.9600
C8—C141.4020 (15)C20—H20B0.9600
C8—C91.4025 (14)C20—H20C0.9600
C6—O1—H1O1103.0 (15)O4—C11—C9121.14 (10)
C12—O3—H1O3109.5O4—C11—C12117.47 (9)
C11—O4—H1O499.1 (16)C9—C11—C12121.39 (10)
C2—C1—C10114.88 (10)O3—C12—C13125.37 (10)
C2—C1—H1A108.5O3—C12—C11112.74 (9)
C10—C1—H1A108.5C13—C12—C11121.88 (10)
C2—C1—H1B108.5C14—C13—C12116.71 (10)
C10—C1—H1B108.5C14—C13—C15122.37 (10)
H1A—C1—H1B107.5C12—C13—C15120.91 (10)
C3—C2—C1112.14 (11)C13—C14—C8121.63 (10)
C3—C2—H2A109.2C13—C14—H14A119.2
C1—C2—H2A109.2C8—C14—H14A119.2
C3—C2—H2B109.2C16—C15—C13112.76 (10)
C1—C2—H2B109.2C16—C15—C17111.02 (12)
H2A—C2—H2B107.9C13—C15—C17110.34 (11)
C2—C3—C4110.58 (10)C16—C15—H15A107.5
C2—C3—H3A109.5C13—C15—H15A107.5
C4—C3—H3A109.5C17—C15—H15A107.5
C2—C3—H3B109.5C15—C16—H16A109.5
C4—C3—H3B109.5C15—C16—H16B109.5
H3A—C3—H3B108.1H16A—C16—H16B109.5
C5—C4—C19110.25 (11)C15—C16—H16C109.5
C5—C4—C3110.69 (9)H16A—C16—H16C109.5
C19—C4—C3109.72 (10)H16B—C16—H16C109.5
C5—C4—C18110.63 (10)C15—C17—H17A109.5
C19—C4—C18108.68 (10)C15—C17—H17B109.5
C3—C4—C18106.80 (10)H17A—C17—H17B109.5
C6—C5—C10119.99 (10)C15—C17—H17C109.5
C6—C5—C4120.81 (10)H17A—C17—H17C109.5
C10—C5—C4118.97 (9)H17B—C17—H17C109.5
C5—C6—O1123.23 (11)C4—C18—H18A109.5
C5—C6—C7123.79 (10)C4—C18—H18B109.5
O1—C6—C7112.98 (10)H18A—C18—H18B109.5
O2—C7—C8124.11 (10)C4—C18—H18C109.5
O2—C7—C6116.73 (10)H18A—C18—H18C109.5
C8—C7—C6119.15 (10)H18B—C18—H18C109.5
C14—C8—C9122.20 (10)C4—C19—H19A109.5
C14—C8—C7118.51 (10)C4—C19—H19B109.5
C9—C8—C7119.25 (10)H19A—C19—H19B109.5
C11—C9—C8116.10 (10)C4—C19—H19C109.5
C11—C9—C10121.16 (9)H19A—C19—H19C109.5
C8—C9—C10122.62 (9)H19B—C19—H19C109.5
C5—C10—C9114.30 (9)C10—C20—H20A109.5
C5—C10—C1110.80 (10)C10—C20—H20B109.5
C9—C10—C1109.83 (9)H20A—C20—H20B109.5
C5—C10—C20106.26 (10)C10—C20—H20C109.5
C9—C10—C20104.61 (10)H20A—C20—H20C109.5
C1—C10—C20110.81 (9)H20B—C20—H20C109.5
C10—C1—C2—C329.06 (15)C6—C5—C10—C20−103.51 (13)
C1—C2—C3—C4−65.02 (14)C4—C5—C10—C2071.15 (14)
C2—C3—C4—C541.24 (14)C11—C9—C10—C5176.26 (11)
C2—C3—C4—C19163.14 (10)C8—C9—C10—C5−7.91 (17)
C2—C3—C4—C18−79.24 (12)C11—C9—C10—C151.02 (15)
C19—C4—C5—C668.23 (16)C8—C9—C10—C1−133.15 (12)
C3—C4—C5—C6−170.18 (12)C11—C9—C10—C20−67.95 (14)
C18—C4—C5—C6−52.01 (17)C8—C9—C10—C20107.89 (13)
C19—C4—C5—C10−106.38 (12)C2—C1—C10—C525.02 (15)
C3—C4—C5—C1015.20 (16)C2—C1—C10—C9152.24 (11)
C18—C4—C5—C10133.38 (11)C2—C1—C10—C20−92.68 (13)
C10—C5—C6—O1171.98 (12)C8—C9—C11—O4−177.87 (12)
C4—C5—C6—O1−2.6 (2)C10—C9—C11—O4−1.77 (19)
C10—C5—C6—C7−8.9 (2)C8—C9—C11—C122.54 (19)
C4—C5—C6—C7176.56 (13)C10—C9—C11—C12178.63 (11)
C5—C6—C7—O2−177.17 (14)O4—C11—C12—O3−2.26 (19)
O1—C6—C7—O22.0 (2)C9—C11—C12—O3177.35 (11)
C5—C6—C7—C82.0 (2)O4—C11—C12—C13176.62 (11)
O1—C6—C7—C8−178.82 (12)C9—C11—C12—C13−3.8 (2)
O2—C7—C8—C14−1.2 (2)O3—C12—C13—C14−178.94 (13)
C6—C7—C8—C14179.71 (13)C11—C12—C13—C142.33 (19)
O2—C7—C8—C9−179.12 (14)O3—C12—C13—C151.0 (2)
C6—C7—C8—C91.8 (2)C11—C12—C13—C15−177.76 (12)
C14—C8—C9—C11−0.13 (19)C12—C13—C14—C80.1 (2)
C7—C8—C9—C11177.69 (12)C15—C13—C14—C8−179.81 (13)
C14—C8—C9—C10−176.16 (12)C9—C8—C14—C13−1.2 (2)
C7—C8—C9—C101.66 (19)C7—C8—C14—C13−179.04 (12)
C6—C5—C10—C911.32 (18)C14—C13—C15—C16−25.4 (2)
C4—C5—C10—C9−174.02 (10)C12—C13—C15—C16154.74 (13)
C6—C5—C10—C1136.05 (13)C14—C13—C15—C1799.41 (15)
C4—C5—C10—C1−49.30 (15)C12—C13—C15—C17−80.49 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O20.86 (2)1.97 (2)2.5626 (13)124.5 (19)
O3—H1O3···O2i0.821.932.7008 (13)156
O4—H1O4···O30.81 (2)1.96 (2)2.5677 (13)131 (2)
C14—H14A···O3ii0.932.573.4712 (14)163
C15—H15A···O2i0.982.453.1908 (14)132
C18—H18A···O10.962.242.9053 (18)125
C19—H19B···O10.962.533.1360 (17)121
C20—H20C···O40.962.443.0838 (16)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O20.86 (2)1.97 (2)2.5626 (13)124.5 (19)
O3—H1O3⋯O2i0.821.932.7008 (13)156
O4—H1O4⋯O30.81 (2)1.96 (2)2.5677 (13)131 (2)
C14—H14A⋯O3ii0.932.573.4712 (14)163
C15—H15A⋯O2i0.982.453.1908 (14)132
C18—H18A⋯O10.962.242.9053 (18)125
C19—H19B⋯O10.962.533.1360 (17)121
C20—H20C⋯O40.962.443.0838 (16)124

Symmetry codes: (i) ; (ii) .

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