| Literature DB >> 21577827 |
Hoong-Kun Fun, Wan-Sin Loh, G Janardhana, A M A Khader, B Kalluraya.
Abstract
In the title compound, C(10)H(9)NO(3)S·H(2)O, the thio-morpholine ring exists in a conformation inter-mediate between twist-boat and half-chair. An inter-molecular O-H⋯O hydrogen bond links the acid and water mol-ecules together. In the crystal packing, inter-molecular O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.Entities:
Year: 2009 PMID: 21577827 PMCID: PMC2970497 DOI: 10.1107/S1600536809034977
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H9NO3S·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 7672 reflections |
| θ = 3.4–33.1° | |
| µ = 0.29 mm−1 | |
| β = 94.336 (1)° | Block, colourless |
| 0.49 × 0.34 × 0.11 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 4859 independent reflections |
| Radiation source: fine-focus sealed tube | 3833 reflections with |
| graphite | |
| φ and ω scans | θmax = 35.1°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 25955 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4859 reflections | (Δ/σ)max = 0.001? |
| 157 parameters | Δρmax = 0.54 e Å−3 |
| 0 restraints | Δρmin = −0.26 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.25290 (3) | 0.20298 (3) | 0.368735 (18) | 0.02391 (8) | |
| O1W | 0.17478 (12) | 0.72939 (10) | 0.31220 (6) | 0.02515 (17) | |
| O1 | 0.47141 (12) | 0.56427 (9) | 0.33767 (6) | 0.02699 (18) | |
| O2 | 0.94362 (11) | 0.62615 (9) | 0.40417 (6) | 0.02360 (16) | |
| O3 | 0.90204 (12) | 0.44113 (9) | 0.31220 (6) | 0.02548 (17) | |
| C1 | 0.46033 (14) | 0.11958 (11) | 0.38793 (6) | 0.01900 (18) | |
| C2 | 0.47444 (16) | −0.03074 (12) | 0.39590 (7) | 0.0233 (2) | |
| H2A | 0.3733 | −0.0879 | 0.3900 | 0.028* | |
| C3 | 0.63845 (17) | −0.09543 (12) | 0.41263 (7) | 0.0247 (2) | |
| H3A | 0.6469 | −0.1955 | 0.4193 | 0.030* | |
| C4 | 0.78984 (16) | −0.01067 (12) | 0.41946 (7) | 0.0246 (2) | |
| H4A | 0.8999 | −0.0544 | 0.4296 | 0.030* | |
| C5 | 0.77815 (14) | 0.13934 (12) | 0.41127 (7) | 0.02197 (19) | |
| H5A | 0.8801 | 0.1956 | 0.4156 | 0.026* | |
| C6 | 0.61270 (13) | 0.20523 (11) | 0.39649 (6) | 0.01770 (17) | |
| N1 | 0.59863 (11) | 0.35987 (9) | 0.39215 (6) | 0.01904 (16) | |
| C7 | 0.46962 (14) | 0.43038 (12) | 0.34290 (7) | 0.02067 (19) | |
| C8 | 0.32911 (14) | 0.33868 (13) | 0.29697 (7) | 0.0234 (2) | |
| H8A | 0.3764 | 0.2918 | 0.2482 | 0.028* | |
| H8B | 0.2309 | 0.3995 | 0.2760 | 0.028* | |
| C9 | 0.73286 (14) | 0.45083 (11) | 0.43631 (7) | 0.02047 (18) | |
| H9A | 0.7934 | 0.3959 | 0.4825 | 0.025* | |
| H9B | 0.6764 | 0.5333 | 0.4613 | 0.025* | |
| C10 | 0.86713 (13) | 0.50482 (11) | 0.37642 (7) | 0.01941 (18) | |
| H1O2 | 1.028 (3) | 0.652 (3) | 0.3672 (15) | 0.064 (7)* | |
| H2W1 | 0.155 (3) | 0.784 (2) | 0.2691 (15) | 0.056 (6)* | |
| H1W1 | 0.270 (3) | 0.672 (2) | 0.3095 (13) | 0.043 (5)* |
| S1 | 0.01398 (12) | 0.03081 (15) | 0.02713 (14) | −0.00430 (9) | 0.00291 (9) | 0.00246 (9) |
| O1W | 0.0185 (4) | 0.0229 (4) | 0.0340 (4) | 0.0004 (3) | 0.0017 (3) | 0.0072 (3) |
| O1 | 0.0224 (4) | 0.0214 (4) | 0.0371 (5) | 0.0033 (3) | 0.0020 (3) | 0.0071 (3) |
| O2 | 0.0222 (4) | 0.0184 (3) | 0.0304 (4) | −0.0051 (3) | 0.0030 (3) | −0.0026 (3) |
| O3 | 0.0231 (4) | 0.0232 (4) | 0.0306 (4) | −0.0046 (3) | 0.0049 (3) | −0.0046 (3) |
| C1 | 0.0179 (4) | 0.0209 (4) | 0.0184 (4) | −0.0039 (3) | 0.0028 (3) | −0.0002 (3) |
| C2 | 0.0279 (5) | 0.0217 (5) | 0.0208 (4) | −0.0064 (4) | 0.0046 (4) | −0.0016 (3) |
| C3 | 0.0358 (6) | 0.0175 (4) | 0.0211 (4) | −0.0004 (4) | 0.0050 (4) | −0.0006 (3) |
| C4 | 0.0264 (5) | 0.0226 (5) | 0.0251 (5) | 0.0052 (4) | 0.0030 (4) | 0.0020 (4) |
| C5 | 0.0169 (4) | 0.0206 (4) | 0.0284 (5) | 0.0016 (3) | 0.0019 (3) | 0.0028 (4) |
| C6 | 0.0162 (4) | 0.0169 (4) | 0.0201 (4) | −0.0009 (3) | 0.0022 (3) | 0.0013 (3) |
| N1 | 0.0136 (3) | 0.0176 (4) | 0.0256 (4) | −0.0004 (3) | −0.0006 (3) | 0.0029 (3) |
| C7 | 0.0150 (4) | 0.0233 (5) | 0.0239 (4) | 0.0020 (3) | 0.0027 (3) | 0.0048 (3) |
| C8 | 0.0169 (4) | 0.0296 (5) | 0.0233 (5) | −0.0003 (4) | −0.0008 (3) | 0.0047 (4) |
| C9 | 0.0172 (4) | 0.0196 (4) | 0.0243 (4) | −0.0020 (3) | −0.0001 (3) | 0.0002 (3) |
| C10 | 0.0147 (4) | 0.0169 (4) | 0.0262 (5) | 0.0000 (3) | −0.0009 (3) | 0.0000 (3) |
| S1—C1 | 1.7575 (11) | C4—C5 | 1.3914 (16) |
| S1—C8 | 1.8064 (12) | C4—H4A | 0.9300 |
| O1W—H2W1 | 0.85 (2) | C5—C6 | 1.3984 (15) |
| O1W—H1W1 | 0.90 (2) | C5—H5A | 0.9300 |
| O1—C7 | 1.2374 (13) | C6—N1 | 1.4311 (13) |
| O2—C10 | 1.3189 (13) | N1—C7 | 1.3648 (13) |
| O2—H1O2 | 0.93 (3) | N1—C9 | 1.4539 (13) |
| O3—C10 | 1.2116 (14) | C7—C8 | 1.5014 (16) |
| C1—C2 | 1.3951 (15) | C8—H8A | 0.9700 |
| C1—C6 | 1.3985 (14) | C8—H8B | 0.9700 |
| C2—C3 | 1.3873 (17) | C9—C10 | 1.5205 (16) |
| C2—H2A | 0.9300 | C9—H9A | 0.9700 |
| C3—C4 | 1.3871 (17) | C9—H9B | 0.9700 |
| C3—H3A | 0.9300 | ||
| C1—S1—C8 | 94.86 (5) | C7—N1—C6 | 123.32 (9) |
| H2W1—O1W—H1W1 | 114 (2) | C7—N1—C9 | 116.19 (8) |
| C10—O2—H1O2 | 108.8 (14) | C6—N1—C9 | 120.33 (8) |
| C2—C1—C6 | 119.68 (10) | O1—C7—N1 | 120.11 (10) |
| C2—C1—S1 | 120.78 (8) | O1—C7—C8 | 122.76 (10) |
| C6—C1—S1 | 119.53 (8) | N1—C7—C8 | 117.12 (9) |
| C3—C2—C1 | 120.38 (10) | C7—C8—S1 | 109.94 (7) |
| C3—C2—H2A | 119.8 | C7—C8—H8A | 109.7 |
| C1—C2—H2A | 119.8 | S1—C8—H8A | 109.7 |
| C4—C3—C2 | 119.90 (10) | C7—C8—H8B | 109.7 |
| C4—C3—H3A | 120.0 | S1—C8—H8B | 109.7 |
| C2—C3—H3A | 120.0 | H8A—C8—H8B | 108.2 |
| C3—C4—C5 | 120.42 (11) | N1—C9—C10 | 111.92 (9) |
| C3—C4—H4A | 119.8 | N1—C9—H9A | 109.2 |
| C5—C4—H4A | 119.8 | C10—C9—H9A | 109.2 |
| C4—C5—C6 | 119.83 (10) | N1—C9—H9B | 109.2 |
| C4—C5—H5A | 120.1 | C10—C9—H9B | 109.2 |
| C6—C5—H5A | 120.1 | H9A—C9—H9B | 107.9 |
| C1—C6—C5 | 119.75 (9) | O3—C10—O2 | 124.51 (10) |
| C1—C6—N1 | 119.99 (9) | O3—C10—C9 | 123.56 (9) |
| C5—C6—N1 | 120.24 (9) | O2—C10—C9 | 111.90 (9) |
| C8—S1—C1—C2 | −142.00 (9) | C5—C6—N1—C7 | 149.31 (11) |
| C8—S1—C1—C6 | 38.91 (9) | C1—C6—N1—C9 | 152.60 (10) |
| C6—C1—C2—C3 | 0.30 (16) | C5—C6—N1—C9 | −25.91 (14) |
| S1—C1—C2—C3 | −178.80 (8) | C6—N1—C7—O1 | −175.33 (10) |
| C1—C2—C3—C4 | −1.55 (16) | C9—N1—C7—O1 | 0.07 (15) |
| C2—C3—C4—C5 | 1.24 (17) | C6—N1—C7—C8 | 4.85 (15) |
| C3—C4—C5—C6 | 0.33 (17) | C9—N1—C7—C8 | −179.75 (9) |
| C2—C1—C6—C5 | 1.27 (15) | O1—C7—C8—S1 | −134.43 (10) |
| S1—C1—C6—C5 | −179.63 (8) | N1—C7—C8—S1 | 45.39 (12) |
| C2—C1—C6—N1 | −177.25 (9) | C1—S1—C8—C7 | −60.65 (8) |
| S1—C1—C6—N1 | 1.86 (13) | C7—N1—C9—C10 | −77.23 (12) |
| C4—C5—C6—C1 | −1.58 (16) | C6—N1—C9—C10 | 98.32 (11) |
| C4—C5—C6—N1 | 176.93 (10) | N1—C9—C10—O3 | −26.48 (14) |
| C1—C6—N1—C7 | −32.18 (15) | N1—C9—C10—O2 | 155.33 (9) |
| H··· | ||||
| O2—H1O2···O1Wi | 0.93 (2) | 1.62 (2) | 2.5384 (13) | 168 (3) |
| O1W—H2W1···O3ii | 0.85 (2) | 1.96 (2) | 2.7893 (13) | 168 (2) |
| O1W—H1W1···O1 | 0.90 (2) | 1.85 (2) | 2.7221 (13) | 163.4 (19) |
| C2—H2A···O1Wiii | 0.93 | 2.51 | 3.3666 (15) | 153 |
| C9—H9A···O2iv | 0.97 | 2.58 | 3.4429 (14) | 149 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O2—H1 | 0.93 (2) | 1.62 (2) | 2.5384 (13) | 168 (3) |
| O1 | 0.85 (2) | 1.96 (2) | 2.7893 (13) | 168 (2) |
| O1 | 0.90 (2) | 1.85 (2) | 2.7221 (13) | 163.4 (19) |
| C2—H2 | 0.93 | 2.51 | 3.3666 (15) | 153 |
| C9—H9 | 0.97 | 2.58 | 3.4429 (14) | 149 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .