| Literature DB >> 21577802 |
Feng-Yu Bao1, Hai-Yan Zhang, Ying-Xia Zhou, Su Hui.
Abstract
In the title compound, C(14)H(11)N(3)O(3)·H(2)O, the planar [maximum deviation 0.135 (1) Å] 1,3-benzodioxole ring system is oriented at a dihedral angle of 13.93 (7)° with respect to the pyridine ring. Extensive inter-molecular N-H⋯O, O-H⋯O, O-H⋯N and weak C-H⋯O hydrogen bonding is present in the crystal structure.Entities:
Year: 2009 PMID: 21577802 PMCID: PMC2970319 DOI: 10.1107/S1600536809034503
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H11N3O3·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2884 reflections |
| θ = 2.3–26.0° | |
| µ = 0.11 mm−1 | |
| β = 103.161 (1)° | Block, colourless |
| 0.26 × 0.21 × 0.17 mm | |
| Bruker SMART CCD area-detector diffractometer | 2691 independent reflections |
| Radiation source: fine-focus sealed tube | 1839 reflections with |
| graphite | |
| ω scans | θmax = 26.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 19494 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.010 | |
| 2691 reflections | Δρmax = 0.15 e Å−3 |
| 199 parameters | Δρmin = −0.13 e Å−3 |
| 3 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0058 (14) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.25573 (14) | 0.30595 (11) | 0.16863 (10) | 0.0528 (4) | |
| C7 | 0.46242 (17) | 0.23623 (12) | 0.09399 (11) | 0.0469 (4) | |
| O3 | 0.08396 (13) | 0.45982 (9) | 0.23857 (10) | 0.0702 (4) | |
| C10 | −0.09502 (16) | 0.32960 (12) | 0.28168 (11) | 0.0442 (4) | |
| O2 | 0.84690 (15) | 0.27321 (11) | −0.03215 (11) | 0.0807 (4) | |
| N2 | 0.12618 (14) | 0.27993 (10) | 0.20830 (10) | 0.0516 (4) | |
| H2A | 0.0972 | 0.2122 | 0.2116 | 0.062* | |
| C2 | 0.65230 (18) | 0.34247 (13) | 0.03595 (12) | 0.0522 (4) | |
| N3 | −0.33050 (15) | 0.39773 (11) | 0.32710 (11) | 0.0596 (4) | |
| O1 | 0.73361 (16) | 0.43293 (10) | 0.01301 (11) | 0.0842 (5) | |
| C6 | 0.53331 (19) | 0.14169 (13) | 0.06740 (13) | 0.0544 (4) | |
| H6A | 0.4908 | 0.0732 | 0.0781 | 0.065* | |
| C8 | 0.32492 (19) | 0.22390 (13) | 0.13835 (12) | 0.0530 (4) | |
| H8A | 0.2860 | 0.1532 | 0.1449 | 0.064* | |
| C11 | −0.12747 (19) | 0.22473 (13) | 0.31162 (13) | 0.0523 (4) | |
| H11A | −0.0606 | 0.1659 | 0.3059 | 0.063* | |
| C5 | 0.66608 (19) | 0.14538 (13) | 0.02518 (13) | 0.0576 (5) | |
| H5A | 0.7142 | 0.0814 | 0.0084 | 0.069* | |
| C13 | −0.35719 (19) | 0.29587 (15) | 0.35623 (13) | 0.0607 (5) | |
| H13A | −0.4466 | 0.2835 | 0.3822 | 0.073* | |
| C4 | 0.72117 (19) | 0.24715 (14) | 0.00991 (13) | 0.0530 (4) | |
| C9 | 0.04620 (17) | 0.36199 (12) | 0.24153 (12) | 0.0489 (4) | |
| C1 | 0.52308 (19) | 0.34048 (12) | 0.07778 (12) | 0.0520 (4) | |
| H1B | 0.4771 | 0.4053 | 0.0948 | 0.062* | |
| C12 | −0.26006 (19) | 0.20836 (14) | 0.34996 (13) | 0.0606 (5) | |
| H12A | −0.2834 | 0.1384 | 0.3714 | 0.073* | |
| C14 | −0.20100 (18) | 0.41282 (13) | 0.29066 (12) | 0.0523 (4) | |
| H14A | −0.1805 | 0.4837 | 0.2700 | 0.063* | |
| C3 | 0.8597 (2) | 0.38998 (17) | −0.02752 (16) | 0.0772 (6) | |
| H3B | 0.8535 | 0.4197 | −0.0953 | 0.093* | |
| H3C | 0.9612 | 0.4112 | 0.0157 | 0.093* | |
| O4 | −0.59280 (17) | 0.54330 (10) | 0.28071 (14) | 0.0854 (5) | |
| H4A | −0.5119 (16) | 0.5021 (15) | 0.2985 (18) | 0.112 (8)* | |
| H4B | −0.6745 (16) | 0.5040 (15) | 0.2633 (16) | 0.102 (8)* |
| N1 | 0.0450 (7) | 0.0537 (8) | 0.0663 (9) | −0.0044 (6) | 0.0260 (7) | −0.0009 (7) |
| C7 | 0.0436 (8) | 0.0483 (9) | 0.0525 (9) | −0.0015 (7) | 0.0187 (7) | −0.0012 (7) |
| O3 | 0.0679 (8) | 0.0461 (7) | 0.1111 (10) | −0.0071 (5) | 0.0505 (7) | −0.0048 (6) |
| C10 | 0.0375 (8) | 0.0476 (9) | 0.0491 (9) | −0.0033 (6) | 0.0135 (7) | −0.0031 (7) |
| O2 | 0.0748 (9) | 0.0758 (9) | 0.1108 (11) | −0.0141 (7) | 0.0614 (8) | −0.0153 (7) |
| N2 | 0.0440 (7) | 0.0454 (7) | 0.0729 (9) | −0.0049 (6) | 0.0294 (7) | −0.0021 (6) |
| C2 | 0.0550 (10) | 0.0463 (9) | 0.0600 (10) | −0.0091 (7) | 0.0234 (8) | −0.0017 (7) |
| N3 | 0.0461 (8) | 0.0603 (9) | 0.0782 (10) | 0.0029 (7) | 0.0260 (7) | −0.0028 (7) |
| O1 | 0.0930 (10) | 0.0566 (8) | 0.1237 (11) | −0.0162 (7) | 0.0675 (9) | −0.0050 (7) |
| C6 | 0.0545 (10) | 0.0448 (9) | 0.0698 (11) | −0.0030 (7) | 0.0262 (8) | −0.0015 (8) |
| C8 | 0.0500 (9) | 0.0483 (9) | 0.0663 (11) | −0.0057 (7) | 0.0249 (8) | −0.0030 (8) |
| C11 | 0.0499 (9) | 0.0474 (9) | 0.0645 (10) | 0.0006 (7) | 0.0235 (8) | 0.0002 (8) |
| C5 | 0.0563 (10) | 0.0476 (10) | 0.0754 (12) | 0.0023 (7) | 0.0286 (9) | −0.0088 (8) |
| C13 | 0.0483 (10) | 0.0688 (11) | 0.0733 (12) | −0.0067 (8) | 0.0312 (9) | −0.0040 (9) |
| C4 | 0.0455 (9) | 0.0601 (10) | 0.0597 (10) | −0.0035 (7) | 0.0252 (8) | −0.0067 (8) |
| C9 | 0.0448 (9) | 0.0466 (9) | 0.0593 (10) | −0.0027 (7) | 0.0200 (8) | 0.0003 (7) |
| C1 | 0.0540 (9) | 0.0454 (9) | 0.0621 (10) | 0.0009 (7) | 0.0245 (8) | −0.0062 (7) |
| C12 | 0.0624 (11) | 0.0522 (10) | 0.0754 (12) | −0.0086 (8) | 0.0329 (10) | 0.0020 (8) |
| C14 | 0.0472 (9) | 0.0467 (9) | 0.0672 (10) | 0.0015 (7) | 0.0216 (8) | 0.0019 (8) |
| C3 | 0.0742 (13) | 0.0751 (13) | 0.0953 (15) | −0.0113 (11) | 0.0461 (11) | 0.0042 (11) |
| O4 | 0.0518 (8) | 0.0474 (7) | 0.1622 (15) | 0.0012 (6) | 0.0353 (9) | 0.0012 (8) |
| N1—C8 | 1.2719 (19) | O1—C3 | 1.423 (2) |
| N1—N2 | 1.3815 (16) | C6—C5 | 1.392 (2) |
| C7—C6 | 1.382 (2) | C6—H6A | 0.9300 |
| C7—C1 | 1.401 (2) | C8—H8A | 0.9300 |
| C7—C8 | 1.453 (2) | C11—C12 | 1.374 (2) |
| O3—C9 | 1.2299 (17) | C11—H11A | 0.9300 |
| C10—C11 | 1.378 (2) | C5—C4 | 1.351 (2) |
| C10—C14 | 1.384 (2) | C5—H5A | 0.9300 |
| C10—C9 | 1.4946 (19) | C13—C12 | 1.365 (2) |
| O2—C4 | 1.3709 (18) | C13—H13A | 0.9300 |
| O2—C3 | 1.416 (2) | C1—H1B | 0.9300 |
| N2—C9 | 1.3423 (18) | C12—H12A | 0.9300 |
| N2—H2A | 0.8600 | C14—H14A | 0.9300 |
| C2—C1 | 1.360 (2) | C3—H3B | 0.9700 |
| C2—O1 | 1.3723 (18) | C3—H3C | 0.9700 |
| C2—C4 | 1.378 (2) | O4—H4A | 0.848 (9) |
| N3—C13 | 1.328 (2) | O4—H4B | 0.839 (9) |
| N3—C14 | 1.3324 (19) | ||
| C8—N1—N2 | 115.31 (13) | C6—C5—H5A | 121.9 |
| C6—C7—C1 | 120.01 (14) | N3—C13—C12 | 123.35 (15) |
| C6—C7—C8 | 118.26 (13) | N3—C13—H13A | 118.3 |
| C1—C7—C8 | 121.73 (14) | C12—C13—H13A | 118.3 |
| C11—C10—C14 | 117.41 (13) | C5—C4—O2 | 127.70 (15) |
| C11—C10—C9 | 125.71 (14) | C5—C4—C2 | 122.33 (14) |
| C14—C10—C9 | 116.88 (13) | O2—C4—C2 | 109.96 (14) |
| C4—O2—C3 | 105.81 (12) | O3—C9—N2 | 122.63 (13) |
| C9—N2—N1 | 118.97 (12) | O3—C9—C10 | 120.53 (13) |
| C9—N2—H2A | 120.5 | N2—C9—C10 | 116.83 (13) |
| N1—N2—H2A | 120.5 | C2—C1—C7 | 116.86 (14) |
| C1—C2—O1 | 128.15 (14) | C2—C1—H1B | 121.6 |
| C1—C2—C4 | 122.21 (14) | C7—C1—H1B | 121.6 |
| O1—C2—C4 | 109.64 (13) | C13—C12—C11 | 119.27 (16) |
| C13—N3—C14 | 116.88 (14) | C13—C12—H12A | 120.4 |
| C2—O1—C3 | 105.75 (13) | C11—C12—H12A | 120.4 |
| C7—C6—C5 | 122.29 (14) | N3—C14—C10 | 124.09 (15) |
| C7—C6—H6A | 118.9 | N3—C14—H14A | 118.0 |
| C5—C6—H6A | 118.9 | C10—C14—H14A | 118.0 |
| N1—C8—C7 | 122.63 (15) | O2—C3—O1 | 108.74 (13) |
| N1—C8—H8A | 118.7 | O2—C3—H3B | 109.9 |
| C7—C8—H8A | 118.7 | O1—C3—H3B | 109.9 |
| C12—C11—C10 | 118.99 (15) | O2—C3—H3C | 109.9 |
| C12—C11—H11A | 120.5 | O1—C3—H3C | 109.9 |
| C10—C11—H11A | 120.5 | H3B—C3—H3C | 108.3 |
| C4—C5—C6 | 116.29 (14) | H4A—O4—H4B | 109.5 (18) |
| C4—C5—H5A | 121.9 |
| H··· | ||||
| N2—H2A···O4i | 0.86 | 2.04 | 2.8819 (17) | 164 |
| O4—H4A···N3 | 0.85 (1) | 1.98 (2) | 2.825 (2) | 174 (2) |
| O4—H4B···O3ii | 0.84 (1) | 2.11 (2) | 2.9019 (19) | 158 (2) |
| C3—H3B···O3iii | 0.97 | 2.57 | 3.495 (2) | 160 |
| C8—H8A···O4i | 0.93 | 2.51 | 3.312 (2) | 144 |
| C11—H11A···O4i | 0.93 | 2.45 | 3.324 (2) | 156 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.04 | 2.8819 (17) | 164 |
| O4—H4 | 0.848 (9) | 1.980 (17) | 2.825 (2) | 174 (2) |
| O4—H4 | 0.839 (9) | 2.106 (15) | 2.9019 (19) | 158.2 (16) |
| C3—H3 | 0.97 | 2.57 | 3.495 (2) | 160 |
| C8—H8 | 0.93 | 2.51 | 3.312 (2) | 144 |
| C11—H11 | 0.93 | 2.45 | 3.324 (2) | 156 |
Symmetry codes: (i) ; (ii) ; (iii) .