Literature DB >> 21577801

(-)-istanbulin a.

Matías López-Rodríguez, Matías Reina, D M Domínguez-Díaz, V Fajardo, L Villarroel.   

Abstract

THE TITLE COMPOUND (SYSTEMATIC NAME: 9a-hydr-oxy-3,4a,5-trimethyl-4a,6,7,8a,9,9a-hexa-hydro-4H,5H-naphtho[2,3-b]furan-2,8-dione), C(15)H(20)O(4), is a sesquiterpene lactone showing the typical eremophilanolide skeleton, which has been isolated from the plant Senecio candidans collected in the Chilean Magallanes region. The present study confirms the atomic connectivity assigned on the basis of (1)H and (13)C NMR spectroscopy, as well as the relative stereochemistry of the 4α-methyl,5α-methyl,8β-hydr-oxy,10β-H unit. The crystal structure is stabilized by inter-molecular O-H⋯O hydrogen bonds involving the hydr-oxy group as donor and the oxo group as acceptor, giving chains along the a axis. The absolute structure was not determined because of the lack of suitable anomalous scatters.

Entities:  

Year:  2009        PMID: 21577801      PMCID: PMC2970221          DOI: 10.1107/S1600536809033418

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of metabolites isolated from plants of the Senecio species, see: Ulubelen et al. (1971 ▶); Burgueño-Tapia et al. (2007 ▶); Domínguez et al. (2008 ▶); Reina,González-Coloma, Domínguez-Díaz et al. (2006 ▶); Reina, González-Coloma, Gutiérrez et al. (2006 ▶).

Experimental

Crystal data

C15H20O4 M = 264.31 Monoclinic, a = 7.432 (4) Å b = 13.010 (6) Å c = 8.161 (6) Å β = 115.47 (4)° V = 712.4 (8) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.45 × 0.35 × 0.25 mm

Data collection

Enraf–Nonius KappaCCD diffractometer Absorption correction: none 4410 measured reflections 1678 independent reflections 1485 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.095 S = 1.04 1678 reflections 186 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.12 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK and DENZO (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶ ); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: Win GX (Farrugia,1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809033418/hg2542sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033418/hg2542Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H20O4F(000) = 284
Mr = 264.31Dx = 1.232 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 297 reflections
a = 7.432 (4) Åθ = 4.3–23.7°
b = 13.010 (6) ŵ = 0.09 mm1
c = 8.161 (6) ÅT = 293 K
β = 115.47 (4)°Block, colourless
V = 712.4 (8) Å30.45 × 0.35 × 0.25 mm
Z = 2
Enraf–Nonius KappaCCD diffractometer1485 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.018
graphiteθmax = 27.5°, θmin = 6.4°
Detector resolution: 9 pixels mm-1h = −9→9
φ and ω scansk = −16→15
4410 measured reflectionsl = −10→10
1678 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: difference Fourier map
wR(F2) = 0.095H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0482P)2 + 0.0898P] where P = (Fo2 + 2Fc2)/3
1678 reflections(Δ/σ)max = 0.001
186 parametersΔρmax = 0.20 e Å3
1 restraintΔρmin = −0.11 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4955 (3)0.50383 (14)0.8319 (2)0.0568 (5)
O20.5421 (4)0.5731 (2)0.6018 (3)0.0869 (7)
O30.6082 (2)0.37119 (15)1.04064 (19)0.0521 (4)
H30.713 (5)0.354 (3)1.018 (4)0.079 (9)*
O4−0.0560 (2)0.35876 (16)0.9801 (3)0.0635 (5)
C10.0324 (3)0.28290 (19)0.9675 (3)0.0456 (5)
C2−0.0216 (4)0.1763 (2)0.9971 (4)0.0635 (7)
H2A−0.14220.17781.01530.079 (9)*
H2B0.08440.14761.10530.073 (9)*
C3−0.0542 (4)0.1087 (2)0.8333 (4)0.0643 (7)
H3A−0.17590.12990.73120.074 (9)*
H3B−0.07130.03790.86150.059 (8)*
C40.1189 (4)0.11441 (18)0.7792 (3)0.0518 (6)
H40.23770.08910.88270.059 (7)*
C50.1632 (3)0.22659 (16)0.7435 (3)0.0375 (4)
C60.3567 (3)0.22904 (18)0.7137 (3)0.0448 (5)
H6A0.46020.18960.80840.057 (7)*
H6B0.33090.19770.59790.050 (7)*
C70.4259 (3)0.33673 (18)0.7168 (3)0.0422 (5)
C80.4541 (3)0.40177 (17)0.8797 (3)0.0412 (5)
C90.2648 (3)0.40183 (17)0.9078 (3)0.0407 (5)
H9A0.15890.43680.80760.036 (5)*
H9B0.28750.43771.01920.043 (6)*
C100.2059 (3)0.29068 (16)0.9181 (3)0.0372 (4)
H100.32000.25831.01700.044 (6)*
C110.4554 (3)0.3931 (2)0.5961 (3)0.0488 (6)
C120.5040 (4)0.4988 (3)0.6676 (4)0.0588 (6)
C130.4395 (4)0.3664 (3)0.4119 (3)0.0668 (8)
H13A0.55210.39400.39820.090*
H13B0.31900.39500.32070.090*
H13C0.43740.29300.39880.090*
C14−0.0102 (3)0.27228 (19)0.5782 (3)0.0512 (5)
H14A0.01730.34310.56480.090*
H14B−0.13030.26760.59470.090*
H14C−0.02660.23480.47130.090*
C150.0800 (5)0.0415 (2)0.6210 (5)0.0771 (9)
H15A0.18860.04540.58720.090*
H15B−0.04150.06070.51950.090*
H15C0.0685−0.02760.65690.090*
U11U22U33U12U13U23
O10.0612 (10)0.0542 (10)0.0633 (10)−0.0224 (8)0.0348 (8)−0.0122 (8)
O20.0968 (16)0.0837 (16)0.0944 (16)−0.0249 (13)0.0548 (14)0.0156 (13)
O30.0339 (7)0.0817 (12)0.0434 (7)−0.0078 (8)0.0194 (6)−0.0091 (8)
O40.0465 (9)0.0680 (12)0.0928 (12)−0.0034 (9)0.0460 (9)−0.0125 (10)
C10.0355 (10)0.0562 (14)0.0480 (11)−0.0048 (10)0.0208 (9)−0.0015 (11)
C20.0559 (14)0.0680 (18)0.0766 (17)−0.0052 (13)0.0378 (13)0.0159 (15)
C30.0604 (15)0.0452 (14)0.0848 (18)−0.0128 (12)0.0289 (14)0.0092 (14)
C40.0517 (12)0.0354 (11)0.0592 (13)0.0019 (10)0.0153 (11)0.0043 (11)
C50.0343 (9)0.0339 (10)0.0398 (9)0.0004 (8)0.0118 (8)−0.0005 (9)
C60.0463 (11)0.0476 (12)0.0440 (10)0.0054 (10)0.0228 (9)−0.0063 (10)
C70.0325 (9)0.0558 (13)0.0408 (10)−0.0020 (9)0.0183 (8)−0.0071 (10)
C80.0384 (10)0.0472 (12)0.0423 (10)−0.0099 (9)0.0213 (8)−0.0077 (9)
C90.0367 (9)0.0430 (12)0.0488 (11)−0.0050 (8)0.0244 (9)−0.0109 (9)
C100.0282 (8)0.0438 (11)0.0407 (10)0.0015 (8)0.0161 (7)0.0002 (9)
C110.0378 (10)0.0703 (16)0.0414 (10)−0.0015 (10)0.0201 (8)0.0010 (11)
C120.0495 (13)0.0745 (18)0.0584 (13)−0.0133 (12)0.0290 (11)0.0039 (13)
C130.0641 (14)0.099 (2)0.0423 (11)−0.0002 (16)0.0278 (11)0.0043 (14)
C140.0465 (12)0.0464 (13)0.0465 (11)0.0016 (10)0.0066 (9)0.0057 (11)
C150.089 (2)0.0412 (14)0.093 (2)−0.0098 (14)0.0316 (18)−0.0157 (14)
O1—C121.371 (3)C6—H6A0.9700
O1—C81.454 (3)C6—H6B0.9700
O2—C121.198 (4)C7—C111.320 (3)
O3—C81.379 (3)C7—C81.512 (3)
O3—H30.90 (4)C8—C91.519 (3)
O4—C11.214 (3)C9—C101.524 (3)
C1—C21.493 (4)C9—H9A0.9700
C1—C101.511 (3)C9—H9B0.9700
C2—C31.530 (4)C10—H100.9800
C2—H2A0.9700C11—C121.477 (4)
C2—H2B0.9700C11—C131.497 (3)
C3—C41.532 (4)C13—H13A0.9600
C3—H3A0.9700C13—H13B0.9600
C3—H3B0.9700C13—H13C0.9600
C4—C151.526 (4)C14—H14A0.9600
C4—C51.551 (3)C14—H14B0.9600
C4—H40.9800C14—H14C0.9600
C5—C141.529 (3)C15—H15A0.9600
C5—C61.558 (3)C15—H15B0.9600
C5—C101.561 (3)C15—H15C0.9600
C6—C71.489 (3)
C12—O1—C8108.86 (19)O1—C8—C7103.91 (17)
C8—O3—H3108 (2)O3—C8—C9107.47 (17)
O4—C1—C2123.30 (19)O1—C8—C9110.88 (18)
O4—C1—C10121.5 (2)C7—C8—C9110.20 (16)
C2—C1—C10115.2 (2)C8—C9—C10108.33 (16)
C1—C2—C3110.2 (2)C8—C9—H9A110.0
C1—C2—H2A109.6C10—C9—H9A110.0
C3—C2—H2A109.6C8—C9—H9B110.0
C1—C2—H2B109.6C10—C9—H9B110.0
C3—C2—H2B109.6H9A—C9—H9B108.4
H2A—C2—H2B108.1C1—C10—C9112.13 (17)
C2—C3—C4112.8 (2)C1—C10—C5110.24 (17)
C2—C3—H3A109.0C9—C10—C5114.02 (16)
C4—C3—H3A109.0C1—C10—H10106.7
C2—C3—H3B109.0C9—C10—H10106.7
C4—C3—H3B109.0C5—C10—H10106.7
H3A—C3—H3B107.8C7—C11—C12108.2 (2)
C15—C4—C3109.7 (2)C7—C11—C13130.8 (3)
C15—C4—C5113.8 (2)C12—C11—C13120.9 (2)
C3—C4—C5111.89 (19)O2—C12—O1121.3 (3)
C15—C4—H4107.0O2—C12—C11129.7 (2)
C3—C4—H4107.0O1—C12—C11108.9 (2)
C5—C4—H4107.0C11—C13—H13A109.5
C14—C5—C4111.40 (18)C11—C13—H13B109.5
C14—C5—C6109.80 (18)H13A—C13—H13B109.5
C4—C5—C6109.48 (18)C11—C13—H13C109.5
C14—C5—C10111.15 (18)H13A—C13—H13C109.5
C4—C5—C10107.89 (17)H13B—C13—H13C109.5
C6—C5—C10106.99 (16)C5—C14—H14A109.5
C7—C6—C5110.60 (17)C5—C14—H14B109.5
C7—C6—H6A109.5H14A—C14—H14B109.5
C5—C6—H6A109.5C5—C14—H14C109.5
C7—C6—H6B109.5H14A—C14—H14C109.5
C5—C6—H6B109.5H14B—C14—H14C109.5
H6A—C6—H6B108.1C4—C15—H15A109.5
C11—C7—C6132.6 (2)C4—C15—H15B109.5
C11—C7—C8109.9 (2)H15A—C15—H15B109.5
C6—C7—C8117.24 (18)C4—C15—H15C109.5
O3—C8—O1109.53 (17)H15A—C15—H15C109.5
O3—C8—C7114.85 (19)H15B—C15—H15C109.5
O4—C1—C2—C3126.2 (3)O3—C8—C9—C10−72.0 (2)
C10—C1—C2—C3−53.2 (3)O1—C8—C9—C10168.34 (16)
C1—C2—C3—C451.1 (3)C7—C8—C9—C1053.8 (2)
C2—C3—C4—C15177.4 (2)O4—C1—C10—C96.0 (3)
C2—C3—C4—C5−55.3 (3)C2—C1—C10—C9−174.5 (2)
C15—C4—C5—C1459.4 (3)O4—C1—C10—C5−122.1 (2)
C3—C4—C5—C14−65.6 (3)C2—C1—C10—C557.3 (2)
C15—C4—C5—C6−62.2 (3)C8—C9—C10—C1173.39 (16)
C3—C4—C5—C6172.73 (19)C8—C9—C10—C5−60.4 (2)
C15—C4—C5—C10−178.3 (2)C14—C5—C10—C166.0 (2)
C3—C4—C5—C1056.6 (2)C4—C5—C10—C1−56.4 (2)
C14—C5—C6—C769.0 (2)C6—C5—C10—C1−174.11 (18)
C4—C5—C6—C7−168.42 (18)C14—C5—C10—C9−61.1 (2)
C10—C5—C6—C7−51.8 (2)C4—C5—C10—C9176.45 (16)
C5—C6—C7—C11−120.6 (2)C6—C5—C10—C958.7 (2)
C5—C6—C7—C853.2 (2)C6—C7—C11—C12173.9 (2)
C12—O1—C8—O3119.6 (2)C8—C7—C11—C12−0.3 (2)
C12—O1—C8—C7−3.5 (2)C6—C7—C11—C13−3.7 (4)
C12—O1—C8—C9−121.9 (2)C8—C7—C11—C13−177.9 (2)
C11—C7—C8—O3−117.3 (2)C8—O1—C12—O2−177.8 (2)
C6—C7—C8—O367.5 (2)C8—O1—C12—C113.5 (3)
C11—C7—C8—O12.3 (2)C7—C11—C12—O2179.5 (3)
C6—C7—C8—O1−172.85 (17)C13—C11—C12—O2−2.6 (4)
C11—C7—C8—C9121.1 (2)C7—C11—C12—O1−2.0 (3)
C6—C7—C8—C9−54.0 (2)C13—C11—C12—O1175.8 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···O4i0.90 (4)1.87 (4)2.750 (3)164 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O4i0.90 (4)1.87 (4)2.750 (3)164 (4)

Symmetry code: (i) .

  6 in total

1.  Defensive chemistry of Senecio miser.

Authors:  M Reina; A González-Coloma; C Gutiérrez; R Cabrera; M L Rodríguez; V Fajardo; L Villarroel
Journal:  J Nat Prod       Date:  2001-01       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Bioactive eremophilanolides from Senecio poepigii.

Authors:  Matías Reina; Azucena González-Coloma; Dulce Domínguez-Díaz; Raimundo Cabrera; Cristina Giménez Mariño; Matías L Rodríguez; Luis Villarroel
Journal:  Nat Prod Res       Date:  2006-01       Impact factor: 2.861

4.  Bioactive furanoeremophilanes from Senecio otites Kunze ex DC.

Authors:  Dulce M Domínguez; Matías Reina; Luis Villarroel; Victor Fajardo; Azucena González-Coloma
Journal:  Z Naturforsch C J Biosci       Date:  2008 Nov-Dec

5.  Antifeedant and phytotoxic activity of cacalolides and eremophilanolides.

Authors:  Eleuterio Burgueño-Tapia; Azucena González-Coloma; Darío Martín-Benito; Pedro Joseph-Nathan
Journal:  Z Naturforsch C J Biosci       Date:  2007 May-Jun

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  Geographic Atrophy: Confocal Scanning Laser Ophthalmoscopy, Histology, and Inflammation in the Region of Expanding Lesions.

Authors:  Vera L Bonilha; Brent A Bell; Jane Hu; Caroline Milliner; Gayle J Pauer; Stephanie A Hagstrom; Roxana A Radu; Joe G Hollyfield
Journal:  Invest Ophthalmol Vis Sci       Date:  2020-07-01       Impact factor: 4.799

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.