Literature DB >> 21577793

10-Allyl-2,3-dihydro-1H-pyrrolo[2,1-c][1,4]benzodiazepine-5,11(10H,11aH)-dione.

Hanane Benzeid, El Mokhtar Essassi, Nathalie Saffon, Bernard Garrigues, Seik Weng Ng.   

Abstract

The compound, C(15)H(16)N(2)O(2), features a pyrroline ring fused with a seven-membered diazepine ring; the latter system adopts a boat conformation (with the methine C atom as the prow and the two C atoms of the aromatic ring as the stern). A CH(2)-CH(2) segment of the pyrroline ring is disordered over two positions in a 1:1 ratio.

Entities:  

Year:  2009        PMID: 21577793      PMCID: PMC2970423          DOI: 10.1107/S1600536809034266

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Pyrrolo[2,1-c][1,4]benzodiazepines are potent, naturally occurring anti­tumor anti­biotics produced by Streptomyces species; see: Cargill et al. (1974 ▶); Thurston et al. (1993 ▶). For the design and synthesis of DNA inter-strand cross-linking as well as conjugate agents to enhance the sequence selectivity and to increase selectivity for tumor cells, see: Bose et al. (1992 ▶); Gregson et al. (2004 ▶).

Experimental

Crystal data

C15H16N2O2 M = 256.30 Orthorhombic, a = 7.0988 (1) Å b = 11.7166 (2) Å c = 15.6592 (3) Å V = 1302.44 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 193 K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker APEXII diffractometer Absorption correction: none 20329 measured reflections 2263 independent reflections 1900 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.146 S = 1.04 2263 reflections 178 parameters 15 restraints H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034266/sj2637sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034266/sj2637Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H16N2O2F(000) = 544
Mr = 256.30Dx = 1.307 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 7433 reflections
a = 7.0988 (1) Åθ = 2.2–25.3°
b = 11.7166 (2) ŵ = 0.09 mm1
c = 15.6592 (3) ÅT = 193 K
V = 1302.44 (4) Å3Block, colorless
Z = 40.30 × 0.30 × 0.20 mm
Bruker APEXII diffractometer1900 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
graphiteθmax = 30.5°, θmin = 5.2°
φ and ω scansh = −10→10
20329 measured reflectionsk = −16→14
2263 independent reflectionsl = −22→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.086P)2 + 0.2922P] where P = (Fo2 + 2Fc2)/3
2263 reflections(Δ/σ)max = 0.001
178 parametersΔρmax = 0.53 e Å3
15 restraintsΔρmin = −0.30 e Å3
xyzUiso*/UeqOcc. (<1)
O10.3349 (3)0.89582 (17)0.62000 (12)0.0545 (5)
O2−0.1387 (3)0.62142 (13)0.76109 (11)0.0423 (4)
N10.2785 (2)0.86934 (15)0.76059 (12)0.0312 (4)
N2−0.0624 (3)0.77145 (15)0.67775 (12)0.0327 (4)
C10.2213 (4)0.88657 (18)0.67841 (15)0.0355 (5)
C2−0.0695 (3)0.71719 (17)0.75353 (14)0.0301 (4)
C3−0.0008 (3)0.78280 (17)0.82960 (13)0.0280 (4)
C40.1542 (3)0.85792 (16)0.83096 (13)0.0279 (4)
C50.1940 (3)0.91758 (17)0.90646 (13)0.0333 (4)
H50.29890.96780.90830.040*
C60.0828 (4)0.9044 (2)0.97834 (14)0.0396 (5)
H60.10900.94761.02830.048*
C7−0.0675 (4)0.8278 (2)0.97772 (14)0.0407 (5)
H7−0.14250.81721.02740.049*
C8−0.1059 (3)0.76768 (19)0.90409 (14)0.0359 (5)
H8−0.20690.71440.90400.043*
C9−0.1524 (4)0.7262 (2)0.60032 (14)0.0399 (5)
H9A−0.26780.68230.61370.048*0.50
H9B−0.06510.67800.56670.048*0.50
H9C−0.27590.69160.61430.048*0.50
H9D−0.07190.66710.57360.048*0.50
C10−0.197 (3)0.8367 (11)0.5551 (12)0.059 (3)0.50
H10A−0.21870.82360.49350.071*0.50
H10B−0.31020.87320.58000.071*0.50
C11−0.025 (2)0.9097 (17)0.5692 (5)0.047 (2)0.50
H11A−0.05000.99120.55700.056*0.50
H11B0.08320.88350.53420.056*0.50
C10'−0.178 (3)0.8258 (11)0.5408 (12)0.059 (3)0.50
H10C−0.31240.84650.53660.071*0.50
H10D−0.13120.80610.48300.071*0.50
C11'−0.066 (2)0.9241 (16)0.5769 (5)0.047 (2)0.50
H11C−0.14750.99230.58230.056*0.50
H11D0.04000.94300.53840.056*0.50
C120.0096 (3)0.88869 (18)0.66551 (14)0.0339 (5)
H12−0.05510.94590.70270.041*0.50
H12'−0.04790.93940.70980.041*0.50
C130.4837 (3)0.8775 (2)0.77691 (19)0.0433 (6)
H13A0.55220.83220.73350.052*
H13B0.51210.84460.83370.052*
C140.5520 (4)1.0005 (2)0.7740 (2)0.0490 (6)
H140.50201.04900.73090.059*
C150.6751 (4)1.0438 (3)0.8269 (2)0.0565 (7)
H15A0.72780.99760.87070.068*
H15B0.71191.12140.82160.068*
U11U22U33U12U13U23
O10.0621 (12)0.0550 (11)0.0466 (10)−0.0140 (10)0.0231 (9)−0.0031 (9)
O20.0473 (9)0.0272 (7)0.0525 (10)−0.0097 (7)−0.0042 (8)0.0039 (7)
N10.0253 (7)0.0269 (8)0.0413 (10)−0.0014 (6)0.0036 (7)0.0012 (7)
N20.0361 (8)0.0276 (8)0.0345 (8)−0.0072 (7)−0.0013 (8)−0.0020 (7)
C10.0425 (11)0.0278 (9)0.0362 (10)−0.0075 (9)0.0072 (9)−0.0012 (8)
C20.0273 (8)0.0252 (8)0.0380 (10)−0.0003 (7)0.0003 (9)0.0007 (8)
C30.0266 (8)0.0245 (8)0.0331 (9)0.0012 (7)−0.0001 (8)0.0042 (7)
C40.0267 (8)0.0225 (8)0.0345 (9)0.0010 (7)−0.0026 (8)0.0043 (7)
C50.0358 (10)0.0277 (9)0.0362 (10)−0.0004 (8)−0.0083 (9)0.0034 (8)
C60.0487 (13)0.0388 (11)0.0312 (10)0.0040 (10)−0.0062 (10)0.0022 (9)
C70.0467 (12)0.0436 (12)0.0320 (10)0.0029 (11)0.0042 (10)0.0098 (9)
C80.0345 (10)0.0360 (10)0.0372 (10)−0.0027 (9)0.0015 (9)0.0095 (9)
C90.0446 (12)0.0394 (11)0.0357 (11)−0.0074 (10)−0.0010 (10)−0.0097 (9)
C100.088 (4)0.059 (3)0.031 (5)−0.015 (3)−0.015 (4)0.000 (3)
C110.061 (6)0.042 (4)0.0371 (16)−0.008 (4)−0.012 (3)0.010 (2)
C10'0.088 (4)0.059 (3)0.031 (5)−0.015 (3)−0.015 (4)0.000 (3)
C11'0.061 (6)0.042 (4)0.0371 (16)−0.008 (4)−0.012 (3)0.010 (2)
C120.0440 (11)0.0259 (9)0.0319 (10)−0.0067 (9)−0.0066 (9)0.0041 (8)
C130.0253 (9)0.0403 (12)0.0643 (16)0.0012 (9)0.0044 (10)−0.0007 (11)
C140.0315 (11)0.0506 (14)0.0648 (16)−0.0065 (11)0.0037 (12)0.0040 (13)
C150.0413 (13)0.0502 (14)0.078 (2)−0.0061 (12)0.0002 (15)−0.0023 (14)
O1—C11.224 (3)C9—H9C0.9900
O2—C21.231 (3)C9—H9D0.9900
N1—C11.365 (3)C10—C111.509 (9)
N1—C41.418 (3)C10—H10A0.9900
N1—C131.482 (3)C10—H10B0.9900
N2—C21.347 (3)C11—C121.547 (6)
N2—C91.470 (3)C11—H11A0.9900
N2—C121.478 (3)C11—H11B0.9900
C1—C121.517 (4)C10'—C11'1.507 (9)
C2—C31.499 (3)C10'—H10C0.9900
C3—C81.396 (3)C10'—H10D0.9900
C3—C41.409 (3)C11'—C121.545 (6)
C4—C51.402 (3)C11'—H11C0.9900
C5—C61.383 (3)C11'—H11D0.9900
C5—H50.9500C12—H121.0000
C6—C71.395 (4)C12—H12'1.0000
C6—H60.9500C13—C141.522 (3)
C7—C81.378 (3)C13—H13A0.9900
C7—H70.9500C13—H13B0.9900
C8—H80.9500C14—C151.306 (4)
C9—C10'1.504 (7)C14—H140.9500
C9—C101.510 (7)C15—H15A0.9500
C9—H9A0.9900C15—H15B0.9500
C9—H9B0.9900
C1—N1—C4124.17 (18)C11—C10—H10A110.9
C1—N1—C13116.5 (2)C9—C10—H10A110.9
C4—N1—C13118.9 (2)C11—C10—H10B110.9
C2—N2—C9122.70 (18)C9—C10—H10B110.9
C2—N2—C12124.44 (18)H10A—C10—H10B108.9
C9—N2—C12112.27 (18)C10—C11—C12100.3 (12)
O1—C1—N1121.5 (2)C10—C11—H11A111.7
O1—C1—C12123.5 (2)C12—C11—H11A111.7
N1—C1—C12115.02 (19)C10—C11—H11B111.7
O2—C2—N2122.0 (2)C12—C11—H11B111.7
O2—C2—C3121.4 (2)H11A—C11—H11B109.5
N2—C2—C3116.48 (18)C9—C10'—C11'107.4 (12)
C8—C3—C4118.96 (19)C9—C10'—H10C110.2
C8—C3—C2115.13 (18)C11'—C10'—H10C110.2
C4—C3—C2125.89 (18)C9—C10'—H10D110.2
C5—C4—C3118.78 (19)C11'—C10'—H10D110.2
C5—C4—N1118.87 (18)H10C—C10'—H10D108.5
C3—C4—N1122.21 (18)C10'—C11'—C12108.3 (12)
C6—C5—C4121.0 (2)C10'—C11'—H11C110.0
C6—C5—H5119.5C12—C11'—H11C110.0
C4—C5—H5119.5C10'—C11'—H11D110.0
C5—C6—C7120.2 (2)C12—C11'—H11D110.0
C5—C6—H6119.9H11C—C11'—H11D108.4
C7—C6—H6119.9N2—C12—C1108.08 (19)
C8—C7—C6119.1 (2)N2—C12—C11'104.2 (8)
C8—C7—H7120.5C1—C12—C11'117.9 (7)
C6—C7—H7120.5N2—C12—C11102.7 (8)
C7—C8—C3121.9 (2)C1—C12—C11106.7 (6)
C7—C8—H8119.1N2—C12—H12112.9
C3—C8—H8119.1C1—C12—H12112.9
N2—C9—C10'106.4 (8)C11'—C12—H12100.6
N2—C9—C1099.7 (8)C11—C12—H12112.9
N2—C9—H9A111.8N2—C12—H12'108.8
C10'—C9—H9A115.9C1—C12—H12'108.8
C10—C9—H9A111.8C11'—C12—H12'108.8
N2—C9—H9B111.8C11—C12—H12'121.1
C10'—C9—H9B100.8N1—C13—C14111.7 (2)
C10—C9—H9B111.8N1—C13—H13A109.3
H9A—C9—H9B109.6C14—C13—H13A109.3
N2—C9—H9C110.5N1—C13—H13B109.3
C10'—C9—H9C110.5C14—C13—H13B109.3
C10—C9—H9C105.6H13A—C13—H13B108.0
H9B—C9—H9C116.1C15—C14—C13124.2 (3)
N2—C9—H9D110.5C15—C14—H14117.9
C10'—C9—H9D110.5C13—C14—H14117.9
C10—C9—H9D121.5C14—C15—H15A120.0
H9A—C9—H9D101.8C14—C15—H15B120.0
H9C—C9—H9D108.6H15A—C15—H15B120.0
C11—C10—C9104.3 (14)
C4—N1—C1—O1−180.0 (2)C2—N2—C9—C10150.1 (10)
C13—N1—C1—O17.7 (3)C12—N2—C9—C10−21.4 (10)
C4—N1—C1—C12−2.2 (3)N2—C9—C10—C1141.2 (14)
C13—N1—C1—C12−174.50 (19)C10'—C9—C10—C11−87 (8)
C9—N2—C2—O26.1 (3)C9—C10—C11—C12−45.3 (16)
C12—N2—C2—O2176.6 (2)N2—C9—C10'—C11'11.4 (17)
C9—N2—C2—C3−169.74 (19)C10—C9—C10'—C11'65 (8)
C12—N2—C2—C30.8 (3)C9—C10'—C11'—C12−6.8 (19)
O2—C2—C3—C8−35.3 (3)C2—N2—C12—C170.3 (3)
N2—C2—C3—C8140.6 (2)C9—N2—C12—C1−118.3 (2)
O2—C2—C3—C4146.2 (2)C2—N2—C12—C11'−163.4 (7)
N2—C2—C3—C4−38.0 (3)C9—N2—C12—C11'7.9 (7)
C8—C3—C4—C5−1.9 (3)C2—N2—C12—C11−177.1 (6)
C2—C3—C4—C5176.60 (19)C9—N2—C12—C11−5.7 (6)
C8—C3—C4—N1173.72 (18)O1—C1—C12—N2107.3 (3)
C2—C3—C4—N1−7.8 (3)N1—C1—C12—N2−70.5 (3)
C1—N1—C4—C5−134.8 (2)O1—C1—C12—C11'−10.4 (9)
C13—N1—C4—C537.4 (3)N1—C1—C12—C11'171.8 (8)
C1—N1—C4—C349.6 (3)O1—C1—C12—C11−2.6 (8)
C13—N1—C4—C3−138.2 (2)N1—C1—C12—C11179.7 (8)
C3—C4—C5—C6−0.7 (3)C10'—C11'—C12—N2−0.5 (14)
N1—C4—C5—C6−176.43 (19)C10'—C11'—C12—C1119.3 (11)
C4—C5—C6—C72.4 (3)C10'—C11'—C12—C1185 (7)
C5—C6—C7—C8−1.4 (4)C10—C11—C12—N230.4 (12)
C6—C7—C8—C3−1.2 (4)C10—C11—C12—C1144.0 (10)
C4—C3—C8—C72.9 (3)C10—C11—C12—C11'−68 (6)
C2—C3—C8—C7−175.8 (2)C1—N1—C13—C1473.4 (3)
C2—N2—C9—C10'159.3 (10)C4—N1—C13—C14−99.4 (3)
C12—N2—C9—C10'−12.3 (10)N1—C13—C14—C15139.5 (3)
  3 in total

1.  Linker length modulates DNA cross-linking reactivity and cytotoxic potency of C8/C8' ether-linked C2-exo-unsaturated pyrrolo[2,1-c][1,4]benzodiazepine (PBD) dimers.

Authors:  Stephen J Gregson; Philip W Howard; Darren R Gullick; Anzu Hamaguchi; Kathryn E Corcoran; Natalie A Brooks; John A Hartley; Terence C Jenkins; Sejal Patel; Matthew J Guille; David E Thurston
Journal:  J Med Chem       Date:  2004-02-26       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Effects of daunomycin and anthramycin on electrocardiogram and mitochondrial metabolism of the rat heart.

Authors:  C Cargill; E Bachmann; G Zbinden
Journal:  J Natl Cancer Inst       Date:  1974-08       Impact factor: 13.506

  3 in total

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