Literature DB >> 21577780

N-{1-[(3-Bromo-prop-yl)amino-carbon-yl]eth-yl}-2-(2-nitro-benzene-sulfonamido)propionamide.

Ravula Thirupathi, Damodara N Reddy, S Brinda, Erode N Prabhakaran.   

Abstract

In the title compound, C(15)H(21)BrN(4)O(6)S, all three NH groups are involved in inter-molecular N-H⋯O inter-actions which, together with two inter-molecular C-H⋯O contacts, lead to a continuous anti-parallel β-sheet structure. There are no π-π inter-actions between mol-ecules, and two C-H⋯π inter-actions primarily govern the linkage between sheets.

Entities:  

Year:  2009        PMID: 21577780      PMCID: PMC2970335          DOI: 10.1107/S1600536809034291

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For conformationally restricted peptide analogues, see: Belvisi et al. (2000 ▶); Ripka et al. (1993 ▶). For C-H⋯π inter­actions in crystals and peptides, see: Ciunik et al. (1998 ▶); Görbitz (1989 ▶); Nishio (2004 ▶); Nishio & Hirota (1989 ▶). For the correlation between peptide sequences and folds, see: Venkatraman et al. (2001 ▶); Wilmot & Thornton (1988 ▶). For bond angles in β-strand structures, see: Loughlin et al. (2004 ▶).

Experimental

Crystal data

C15H21BrN4O6S M = 465.33 Orthorhombic, a = 9.4467 (4) Å b = 12.7438 (5) Å c = 17.3257 (7) Å V = 2085.79 (15) Å3 Z = 4 Mo Kα radiation μ = 2.11 mm−1 T = 292 K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.571, T max = 0.817 33853 measured reflections 4107 independent reflections 3007 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.138 S = 1.10 4107 reflections 247 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.51 e Å−3 Absolute structure: Flack (1983 ▶), 1763 Friedel pairs Flack parameter: −0.011 (13) Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1999 ▶) and CAMERON (Watkin et al., 1993 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809034291/bg2284sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809034291/bg2284Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H21BrN4O6SDx = 1.479 Mg m3
Mr = 465.33Melting point: 404 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3007 reflections
a = 9.4467 (4) Åθ = 2.0–26.0°
b = 12.7438 (5) ŵ = 2.11 mm1
c = 17.3257 (7) ÅT = 292 K
V = 2085.79 (15) Å3Needle, colourless
Z = 40.30 × 0.20 × 0.10 mm
F(000) = 948
Bruker SMART CCD area-detector diffractometer4107 independent reflections
Radiation source: fine-focus sealed tube3007 reflections with I > 2σ(I)
graphiteRint = 0.054
φ and ω scansθmax = 26.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −11→11
Tmin = 0.571, Tmax = 0.817k = −15→15
33853 measured reflectionsl = −21→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.138w = 1/[σ2(Fo2) + (0.08P)2] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
4107 reflectionsΔρmax = 0.50 e Å3
247 parametersΔρmin = −0.51 e Å3
0 restraintsAbsolute structure: Flack (1983), 1763 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.011 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.53403 (7)−0.37246 (5)1.22175 (4)0.0837 (3)
S10.50247 (10)0.51539 (8)0.93158 (6)0.0381 (3)
C10.4914 (5)0.4329 (3)0.8477 (2)0.0399 (9)
C40.4882 (8)0.3109 (5)0.7161 (3)0.0774 (18)
H40.48820.26970.67190.093*
C20.6041 (5)0.3690 (4)0.8313 (3)0.0553 (12)
H20.68260.36810.86370.066*
C60.3764 (5)0.4355 (4)0.7986 (3)0.0436 (11)
C50.3759 (6)0.3765 (4)0.7309 (3)0.0633 (14)
H50.30090.38150.69630.076*
C30.6009 (6)0.3060 (4)0.7667 (4)0.0692 (16)
H30.67510.25990.75710.083*
O30.4231 (3)0.6086 (2)0.91578 (19)0.0506 (8)
O40.6505 (3)0.5244 (3)0.9481 (2)0.0550 (9)
O10.1799 (4)0.4744 (3)0.8693 (2)0.0690 (10)
O20.2243 (5)0.5726 (3)0.7713 (3)0.0828 (12)
N10.2509 (4)0.5005 (4)0.8145 (3)0.0526 (10)
N20.4295 (3)0.4562 (2)1.0023 (2)0.0345 (8)
H2A0.35570.48351.02330.041*
C90.4065 (4)0.2648 (3)0.9969 (3)0.0363 (9)
C70.4847 (4)0.3563 (3)1.0325 (2)0.0335 (8)
H70.58560.35071.01990.040*
C80.4666 (7)0.3526 (4)1.1197 (3)0.0709 (16)
H8A0.52110.40781.14300.106*
H8B0.49880.28601.13880.106*
H8C0.36850.36171.13250.106*
O50.2778 (3)0.2645 (3)0.9909 (2)0.0607 (10)
N30.4858 (3)0.1824 (2)0.9757 (2)0.0362 (8)
H3A0.57650.18670.97890.043*
C120.5198 (4)−0.0043 (3)0.9661 (2)0.0383 (9)
C100.4212 (4)0.0847 (3)0.9472 (3)0.0432 (11)
H100.33070.07350.97350.052*
C110.3953 (6)0.0907 (4)0.8584 (3)0.0611 (14)
H11A0.33420.14890.84710.092*
H11B0.35180.02680.84110.092*
H11C0.48410.10010.83230.092*
O60.6452 (3)−0.0016 (2)0.94723 (19)0.0473 (8)
N40.4607 (4)−0.0872 (3)1.0009 (2)0.0497 (9)
H4A0.3710−0.08651.00920.060*
C130.5414 (6)−0.1783 (4)1.0252 (3)0.0582 (13)
H13A0.6400−0.15821.03070.070*
H13B0.5362−0.23120.98510.070*
C140.4926 (6)−0.2250 (4)1.0989 (3)0.0663 (14)
H14A0.3973−0.25211.09240.080*
H14B0.4901−0.17121.13850.080*
C150.5908 (7)−0.3138 (5)1.1244 (3)0.0698 (15)
H15A0.6866−0.28721.12870.084*
H15B0.5905−0.36861.08550.084*
U11U22U33U12U13U23
Br10.0935 (5)0.0790 (5)0.0787 (4)−0.0189 (3)−0.0056 (3)0.0102 (4)
S10.0347 (5)0.0326 (5)0.0469 (6)−0.0058 (4)−0.0054 (4)0.0037 (4)
C10.042 (2)0.037 (2)0.041 (2)0.0002 (19)0.0050 (19)0.0055 (18)
C40.111 (5)0.065 (3)0.056 (3)−0.004 (4)0.031 (4)−0.018 (3)
C20.049 (3)0.053 (3)0.064 (3)0.003 (2)0.013 (2)0.002 (3)
C60.048 (3)0.043 (3)0.039 (3)−0.006 (2)0.0000 (18)−0.004 (2)
C50.075 (4)0.066 (3)0.049 (3)−0.011 (3)0.003 (2)−0.003 (3)
C30.071 (3)0.054 (3)0.083 (4)0.011 (3)0.026 (3)−0.006 (3)
O30.060 (2)0.0286 (15)0.063 (2)0.0015 (14)−0.0122 (15)0.0029 (15)
O40.0340 (15)0.062 (2)0.069 (2)−0.0152 (15)−0.0057 (14)0.0093 (18)
O10.058 (2)0.087 (3)0.062 (2)0.013 (2)0.0060 (19)−0.007 (2)
O20.097 (3)0.073 (3)0.078 (3)0.020 (2)−0.024 (2)0.021 (3)
N10.052 (2)0.059 (3)0.047 (2)0.0065 (19)−0.0159 (19)−0.008 (2)
N20.0293 (17)0.0308 (17)0.043 (2)−0.0017 (13)0.0021 (14)−0.0028 (15)
C90.029 (2)0.030 (2)0.050 (3)−0.0036 (16)0.0025 (18)0.0012 (19)
C70.0304 (19)0.0297 (19)0.040 (2)0.0039 (16)−0.0006 (17)−0.0001 (17)
C80.106 (5)0.059 (3)0.047 (3)0.002 (3)−0.004 (3)0.000 (2)
O50.0262 (15)0.0428 (19)0.113 (3)0.0017 (13)0.0000 (17)−0.021 (2)
N30.0216 (15)0.0293 (16)0.058 (2)−0.0037 (14)−0.0016 (15)−0.0067 (15)
C120.034 (2)0.032 (2)0.050 (2)−0.0031 (17)−0.0015 (17)−0.0110 (18)
C100.030 (2)0.029 (2)0.070 (3)−0.0064 (16)0.003 (2)−0.006 (2)
C110.075 (4)0.049 (3)0.059 (3)0.000 (2)−0.023 (3)−0.011 (3)
O60.0345 (15)0.0413 (17)0.066 (2)−0.0021 (13)0.0056 (13)−0.0032 (16)
N40.041 (2)0.040 (2)0.068 (2)−0.0050 (16)0.0005 (17)0.0037 (18)
C130.063 (3)0.038 (2)0.074 (4)0.001 (2)0.003 (3)−0.001 (2)
C140.062 (3)0.052 (3)0.086 (4)−0.009 (3)0.001 (3)0.001 (3)
C150.089 (4)0.068 (4)0.053 (3)−0.002 (3)−0.004 (3)−0.002 (3)
Br1—C151.921 (6)C7—H70.9800
S1—O31.431 (3)C8—H8A0.9600
S1—O41.431 (3)C8—H8B0.9600
S1—N21.595 (3)C8—H8C0.9600
S1—C11.797 (4)N3—C101.471 (5)
C1—C21.370 (7)N3—H3A0.8600
C1—C61.380 (6)C12—O61.229 (5)
C4—C51.375 (8)C12—N41.338 (5)
C4—C31.381 (9)C12—C101.503 (6)
C4—H40.9300C10—C111.560 (6)
C2—C31.377 (7)C10—H100.9800
C2—H20.9300C11—H11A0.9600
C6—C51.393 (7)C11—H11B0.9600
C6—N11.473 (6)C11—H11C0.9600
C5—H50.9300N4—C131.452 (6)
C3—H30.9300N4—H4A0.8600
O1—N11.209 (6)C13—C141.482 (8)
O2—N11.211 (6)C13—H13A0.9700
N2—C71.472 (5)C13—H13B0.9700
N2—H2A0.8600C14—C151.529 (8)
C9—O51.220 (5)C14—H14A0.9700
C9—N31.342 (5)C14—H14B0.9700
C9—C71.513 (5)C15—H15A0.9700
C7—C81.521 (6)C15—H15B0.9700
O3—S1—O4118.90 (19)C7—C8—H8C109.5
O3—S1—N2108.22 (19)H8A—C8—H8C109.5
O4—S1—N2107.87 (19)H8B—C8—H8C109.5
O3—S1—C1107.47 (19)C9—N3—C10121.5 (3)
O4—S1—C1105.4 (2)C9—N3—H3A119.3
N2—S1—C1108.64 (18)C10—N3—H3A119.3
C2—C1—C6119.8 (4)O6—C12—N4122.9 (4)
C2—C1—S1118.1 (4)O6—C12—C10121.2 (4)
C6—C1—S1122.0 (3)N4—C12—C10115.8 (3)
C5—C4—C3120.3 (5)N3—C10—C12108.0 (3)
C5—C4—H4119.8N3—C10—C11110.8 (4)
C3—C4—H4119.8C12—C10—C11110.4 (4)
C1—C2—C3119.9 (5)N3—C10—H10109.2
C1—C2—H2120.1C12—C10—H10109.2
C3—C2—H2120.1C11—C10—H10109.2
C1—C6—C5120.6 (5)C10—C11—H11A109.5
C1—C6—N1122.1 (4)C10—C11—H11B109.5
C5—C6—N1117.3 (4)H11A—C11—H11B109.5
C4—C5—C6118.8 (5)C10—C11—H11C109.5
C4—C5—H5120.6H11A—C11—H11C109.5
C6—C5—H5120.6H11B—C11—H11C109.5
C2—C3—C4120.4 (5)C12—N4—C13122.9 (4)
C2—C3—H3119.8C12—N4—H4A118.6
C4—C3—H3119.8C13—N4—H4A118.6
O1—N1—O2125.4 (5)N4—C13—C14114.1 (5)
O1—N1—C6116.0 (4)N4—C13—H13A108.7
O2—N1—C6118.6 (4)C14—C13—H13A108.7
C7—N2—S1122.0 (3)N4—C13—H13B108.7
C7—N2—H2A119.0C14—C13—H13B108.7
S1—N2—H2A119.0H13A—C13—H13B107.6
O5—C9—N3122.1 (4)C13—C14—C15111.0 (5)
O5—C9—C7121.6 (4)C13—C14—H14A109.4
N3—C9—C7116.3 (3)C15—C14—H14A109.4
N2—C7—C9110.4 (3)C13—C14—H14B109.4
N2—C7—C8109.9 (4)C15—C14—H14B109.4
C9—C7—C8109.0 (4)H14A—C14—H14B108.0
N2—C7—H7109.2C14—C15—Br1111.9 (4)
C9—C7—H7109.2C14—C15—H15A109.2
C8—C7—H7109.2Br1—C15—H15A109.2
C7—C8—H8A109.5C14—C15—H15B109.2
C7—C8—H8B109.5Br1—C15—H15B109.2
H8A—C8—H8B109.5H15A—C15—H15B107.9
O3—S1—C1—C2148.8 (4)O4—S1—N2—C7−50.8 (3)
O4—S1—C1—C221.1 (4)C1—S1—N2—C762.9 (3)
N2—S1—C1—C2−94.3 (4)S1—N2—C7—C9−95.6 (4)
O3—S1—C1—C6−28.7 (4)S1—N2—C7—C8144.0 (4)
O4—S1—C1—C6−156.4 (4)O5—C9—C7—N2−45.2 (5)
N2—S1—C1—C688.2 (4)N3—C9—C7—N2137.9 (4)
C6—C1—C2—C3−1.3 (7)O5—C9—C7—C875.7 (6)
S1—C1—C2—C3−178.8 (4)N3—C9—C7—C8−101.3 (5)
C2—C1—C6—C5−2.4 (7)O5—C9—N3—C10−2.8 (7)
S1—C1—C6—C5175.0 (4)C7—C9—N3—C10174.1 (4)
C2—C1—C6—N1178.3 (4)C9—N3—C10—C12−152.0 (4)
S1—C1—C6—N1−4.3 (6)C9—N3—C10—C1187.0 (5)
C3—C4—C5—C6−1.7 (8)O6—C12—C10—N3−52.6 (5)
C1—C6—C5—C43.9 (7)N4—C12—C10—N3130.4 (4)
N1—C6—C5—C4−176.8 (5)O6—C12—C10—C1168.6 (5)
C1—C2—C3—C43.5 (8)N4—C12—C10—C11−108.4 (4)
C5—C4—C3—C2−1.9 (9)O6—C12—N4—C135.1 (7)
C1—C6—N1—O1−67.9 (6)C10—C12—N4—C13−178.0 (4)
C5—C6—N1—O1112.8 (5)C12—N4—C13—C14143.2 (5)
C1—C6—N1—O2114.4 (5)N4—C13—C14—C15−174.7 (4)
C5—C6—N1—O2−64.9 (6)C13—C14—C15—Br1177.8 (4)
O3—S1—N2—C7179.3 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O6i0.862.072.884 (4)158
N3—H3A···O60.862.542.829 (4)100
N3—H3A···O5ii0.862.072.899 (4)162
N4—H4A···O4i0.862.353.165 (5)159
C2—H2···O40.932.492.867 (6)104
C7—H7···O5ii0.982.343.193 (5)145
C10—H10···O4i0.982.513.431 (5)156
C13—H13A···O60.972.462.802 (6)100
C13—H13B···O3iii0.972.603.496 (6)154
C11—H11A···Cg3.390.963.922 (6)117
C11—H11B···Cgi3.270.963.857 (6)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O6i0.862.072.884 (4)158
N3—H3A⋯O60.862.542.829 (4)100
N3—H3A⋯O5ii0.862.072.899 (4)162
N4—H4A⋯O4i0.862.353.165 (5)159
C2—H2⋯O40.932.492.867 (6)104
C7—H7⋯O5ii0.982.343.193 (5)145
C10—H10⋯O4i0.982.513.431 (5)156
C13—H13A⋯O60.972.462.802 (6)100
C13—H13B⋯O3iii0.972.603.496 (6)154
C11—H11ACg3.390.963.922 (6)117
C11—H11BCgi3.270.963.857 (6)121

Symmetry codes: (i) ; (ii) ; (iii) . Cg is the centroid of the C1–C6 ring.

  5 in total

Review 1.  Design of folded peptides.

Authors:  J Venkatraman; S C Shankaramma; P Balaram
Journal:  Chem Rev       Date:  2001-10       Impact factor: 60.622

Review 2.  Beta-strand mimetics.

Authors:  Wendy A Loughlin; Joel D A Tyndall; Matthew P Glenn; David P Fairlie
Journal:  Chem Rev       Date:  2004-12       Impact factor: 60.622

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Analysis and prediction of the different types of beta-turn in proteins.

Authors:  C M Wilmot; J M Thornton
Journal:  J Mol Biol       Date:  1988-09-05       Impact factor: 5.469

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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