Literature DB >> 21577756

Bis(imidazole-κN)bis-(nitrato-κO)zinc(II).

Adama Sy, Aliou Hamady Barry, Fatma Ben Amor, Ahmed Driss, Mohamed Gaye, Abdou Salam Sall.   

Abstract

The title complex, [Zn(NO(3))(2)(C(3)H(4)N(2))(2)], contains a Zn(II) centre with a slightly distorted tetra-hedral coordination environment, involving two N atoms from imidazole ligands and two O atoms from nitrate anions. The imino NH groups participate in inter-molecular N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577756      PMCID: PMC2970476          DOI: 10.1107/S1600536809037672

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Li et al. (2007 ▶); Xie et al. (2009 ▶); He et al. (2007 ▶); Shaw et al. (2009 ▶).

Experimental

Crystal data

[Zn(NO3)2(C3H4N2)2] M = 325.55 Triclinic, a = 7.785 (6) Å b = 8.126 (2) Å c = 11.394 (2) Å α = 92.36 (2)° β = 99.67 (4)° γ = 96.32 (7)° V = 704.9 (6) Å3 Z = 2 Mo Kα radiation μ = 1.77 mm−1 T = 293 K 0.1 × 0.1 × 0.1 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 3798 measured reflections 3068 independent reflections 2733 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.127 S = 1.07 3068 reflections 173 parameters H-atom parameters not refined Δρmax = 0.53 e Å−3 Δρmin = −0.64 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: CAD-4 EXPRESS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809037672/fj2244sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809037672/fj2244Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(NO3)2(C3H4N2)2]Z = 2
Mr = 325.55F(000) = 328
Triclinic, P1Dx = 1.534 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.785 (6) ÅCell parameters from 25 reflections
b = 8.126 (2) Åθ = 11–15°
c = 11.394 (2) ŵ = 1.77 mm1
α = 92.36 (2)°T = 293 K
β = 99.67 (4)°Prism, colourless
γ = 96.32 (7)°0.1 × 0.1 × 0.1 mm
V = 704.9 (6) Å3
Enraf–Nonius CAD-4 diffractometer2733 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.014
graphiteθmax = 27.0°, θmin = 2.5°
ω scansh = −9→2
3798 measured reflectionsk = −10→10
3068 independent reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters not refined
wR(F2) = 0.127w = 1/[σ2(Fo2) + (0.0746P)2 + 0.6727P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.003
3068 reflectionsΔρmax = 0.53 e Å3
173 parametersΔρmin = −0.64 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.017 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.15424 (5)0.41605 (4)0.23967 (3)0.03654 (17)
O10.3369 (3)0.3103 (3)0.3456 (2)0.0430 (5)
O20.3189 (6)0.3208 (6)−0.0920 (4)0.0971 (13)
O30.1851 (4)0.4038 (4)0.4754 (2)0.0547 (6)
O40.2364 (4)0.4269 (3)0.0859 (2)0.0558 (7)
O50.4232 (7)0.2470 (7)0.5506 (5)0.1252 (18)
O60.2253 (4)0.1542 (3)0.0596 (2)0.0574 (7)
N10.3052 (4)0.3279 (4)0.4537 (3)0.0510 (7)
N20.2542 (4)0.2947 (4)0.0259 (3)0.0503 (7)
N3−0.0884 (3)0.2952 (3)0.2279 (2)0.0360 (5)
N4−0.3596 (4)0.2487 (4)0.2566 (3)0.0477 (7)
H4N−0.45280.25580.28680.057*
N50.1481 (4)0.6622 (3)0.2647 (2)0.0385 (6)
N60.1656 (4)0.9234 (3)0.2214 (3)0.0509 (7)
H6N0.18621.01140.18420.061*
C1−0.1781 (5)0.1749 (4)0.1439 (3)0.0440 (7)
H1−0.13080.12260.08470.053*
C2−0.3456 (5)0.1454 (5)0.1615 (4)0.0535 (9)
H2−0.43400.07000.11780.064*
C3−0.2038 (4)0.3359 (4)0.2941 (3)0.0417 (7)
H3−0.17910.41470.35810.050*
C40.0906 (5)0.7536 (4)0.3524 (3)0.0429 (7)
H40.05090.71100.41890.051*
C50.1012 (5)0.9154 (4)0.3262 (4)0.0507 (8)
H50.07081.00310.37040.061*
C60.1905 (5)0.7699 (4)0.1878 (3)0.0445 (7)
H60.23250.74220.11870.053*
U11U22U33U12U13U23
Zn10.0395 (2)0.0308 (2)0.0420 (2)0.00520 (14)0.01374 (15)0.00335 (14)
O10.0397 (12)0.0507 (13)0.0420 (12)0.0110 (10)0.0144 (10)0.0003 (10)
O20.124 (3)0.106 (3)0.069 (2)0.009 (3)0.041 (2)0.013 (2)
O30.0595 (16)0.0674 (17)0.0446 (13)0.0221 (13)0.0207 (12)0.0009 (12)
O40.0794 (19)0.0442 (13)0.0528 (15)0.0118 (13)0.0342 (14)0.0027 (11)
O50.130 (4)0.144 (5)0.095 (3)0.039 (3)−0.018 (3)0.028 (3)
O60.082 (2)0.0396 (13)0.0546 (15)−0.0006 (13)0.0282 (14)0.0086 (11)
N10.0515 (17)0.0519 (17)0.0489 (16)0.0010 (14)0.0108 (13)0.0008 (13)
N20.0495 (17)0.0553 (18)0.0472 (16)0.0039 (14)0.0126 (13)0.0046 (13)
N30.0364 (13)0.0365 (13)0.0361 (13)0.0051 (10)0.0094 (10)0.0005 (10)
N40.0363 (14)0.0550 (17)0.0559 (17)0.0096 (12)0.0167 (13)0.0031 (14)
N50.0459 (14)0.0319 (12)0.0396 (13)0.0048 (11)0.0118 (11)0.0051 (10)
N60.063 (2)0.0332 (14)0.0614 (19)0.0060 (13)0.0214 (16)0.0147 (13)
C10.0432 (17)0.0485 (18)0.0397 (16)0.0090 (14)0.0062 (13)−0.0084 (14)
C20.0428 (19)0.052 (2)0.061 (2)0.0028 (15)0.0023 (16)−0.0091 (17)
C30.0446 (17)0.0444 (17)0.0385 (16)0.0070 (14)0.0141 (13)−0.0018 (13)
C40.0528 (19)0.0368 (16)0.0407 (16)0.0038 (14)0.0138 (14)0.0030 (13)
C50.063 (2)0.0346 (16)0.058 (2)0.0075 (15)0.0181 (18)0.0001 (15)
C60.0516 (19)0.0407 (17)0.0453 (17)0.0067 (14)0.0178 (15)0.0090 (13)
Zn1—O41.966 (3)N4—H4N0.8600
Zn1—O11.999 (3)N5—C61.320 (4)
Zn1—N32.011 (3)N5—C41.383 (4)
Zn1—N52.015 (3)N6—C61.334 (5)
O1—N11.301 (4)N6—C51.372 (5)
O2—N21.526 (5)N6—H6N0.8600
O3—N11.228 (4)C1—C21.350 (5)
O4—N21.282 (4)C1—H10.9300
O5—N11.532 (5)C2—H20.9300
O6—N21.229 (4)C3—H30.9300
N3—C31.327 (4)C4—C51.356 (5)
N3—C11.381 (4)C4—H40.9300
N4—C31.330 (5)C5—H50.9300
N4—C21.369 (5)C6—H60.9300
O4—Zn1—O1104.93 (12)C4—N5—Zn1131.1 (2)
O4—Zn1—N3113.61 (12)C6—N6—C5107.5 (3)
O1—Zn1—N3113.00 (11)C6—N6—H6N126.2
O4—Zn1—N595.75 (11)C5—N6—H6N126.2
O1—Zn1—N5118.25 (12)C2—C1—N3109.0 (3)
N3—Zn1—N5110.03 (13)C2—C1—H1125.5
N1—O1—Zn1107.0 (2)N3—C1—H1125.5
N2—O4—Zn1121.2 (2)C1—C2—N4106.4 (3)
O3—N1—O1121.1 (3)C1—C2—H2126.8
O3—N1—O5122.4 (4)N4—C2—H2126.8
O1—N1—O5116.5 (3)N3—C3—N4110.7 (3)
O6—N2—O4123.7 (3)N3—C3—H3124.6
O6—N2—O2120.5 (3)N4—C3—H3124.6
O4—N2—O2115.8 (3)C5—C4—N5109.2 (3)
C3—N3—C1105.9 (3)C5—C4—H4125.4
C3—N3—Zn1124.1 (2)N5—C4—H4125.4
C1—N3—Zn1129.5 (2)C4—C5—N6106.2 (3)
C3—N4—C2108.0 (3)C4—C5—H5126.9
C3—N4—H4N126.0N6—C5—H5126.9
C2—N4—H4N126.0N5—C6—N6111.5 (3)
C6—N5—C4105.5 (3)N5—C6—H6124.2
C6—N5—Zn1123.2 (2)N6—C6—H6124.2
D—H···AD—HH···AD···AD—H···A
N4—H4N···O1i0.861.962.808 (4)170
N6—H6N···O6ii0.861.912.741 (4)161
Zn1—O41.966 (3)
Zn1—O11.999 (3)
Zn1—N32.011 (3)
Zn1—N52.015 (3)
O4—Zn1—O1104.93 (12)
O4—Zn1—N3113.61 (12)
O1—Zn1—N3113.00 (11)
O4—Zn1—N595.75 (11)
O1—Zn1—N5118.25 (12)
N3—Zn1—N5110.03 (13)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4N⋯O1i0.861.962.808 (4)170
N6—H6N⋯O6ii0.861.912.741 (4)161

Symmetry codes: (i) ; (ii) .

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3.  Tris(2-ethyl-1H-imidazole-κN)(terephthalato-κO)zinc(II).

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