Literature DB >> 21577721

Diaqua-dichlorido[5-(3-pyridinio)tetra-zolato-κN]copper(II) dihydrate.

Bo Wang1.   

Abstract

The title compound, [CuCl(2)(C(6)H(5)N(5))(2)(H(2)O)(2)]·2H(2)O, was synthesized by hydro-thermal reaction of CuCl(2) with 3-(2H-tetra-zol-5-yl)pyridine. The Cu(II) cation, located on an inversion center, is coordinated by two Cl(-) ions, two N atoms from two 5-(3-pyridinio)tetra-zolate zwitterions and two O atoms from two water mol-ecules in a distorted octa-hedral geometry. In the crystal, mol-ecules are linked into a two-dimensional sheet parallel to (001) by N-H⋯N, O-H⋯N, O-H⋯O and O-H⋯Cl hydrogen bonds involving the pyridinium N atom, the Cl atoms and the coordinated and free water mol-ecules. The latter are disordered over two positions in a 0.54:0.46 ratio.

Entities:  

Year:  2009        PMID: 21577721      PMCID: PMC2970193          DOI: 10.1107/S1600536809033042

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to metal-organic coordination compounds, see: Chen et al. (2000 ▶, 2001 ▶); Fu & Xiong (2008 ▶); Fu et al. (2007 ▶); Liu et al. (1999 ▶); Xie et al. (2002 ▶, 2003 ▶); Zhang et al. (2001 ▶); Zhao et al. (2004 ▶). For related structures, see: Wang et al. (2005 ▶); Fu et al. (2008 ▶).

Experimental

Crystal data

[CuCl2(C6n class="Species">H5N5)2(H2O)2]·2H2O M = 500.80 Triclinic, a = 6.5484 (13) Å b = 8.3348 (17) Å c = 9.1215 (18) Å α = 99.54 (3)° β = 110.22 (3)° γ = 91.73 (3)° V = 458.64 (19) Å3 Z = 1 Mo Kα radiation μ = 1.53 mm−1 T = 298 K 0.15 × 0.10 × 0.10 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.85, T max = 1.00 (expected range = 0.729–0.858) 4880 measured reflections 2103 independent reflections 1953 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.114 S = 1.31 2103 reflections 142 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.43 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033042/dn2471sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033042/dn2471Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CuCl2(C6H5N5)2(H2O)2]·2H2OZ = 1
Mr = 500.80F(000) = 255
Triclinic, P1Dx = 1.813 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.5484 (13) ÅCell parameters from 1953 reflections
b = 8.3348 (17) Åθ = 3.1–27.5°
c = 9.1215 (18) ŵ = 1.53 mm1
α = 99.54 (3)°T = 298 K
β = 110.22 (3)°Block, blue
γ = 91.73 (3)°0.15 × 0.10 × 0.10 mm
V = 458.64 (19) Å3
Rigaku Mercury2 diffractometer2103 independent reflections
Radiation source: fine-focus sealed tube1953 reflections with I > 2σ(I)
graphiteRint = 0.037
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
CCD profile fitting scansh = −8→8
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −10→10
Tmin = 0.85, Tmax = 1.00l = −11→11
4880 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 1.31w = 1/[σ2(Fo2) + 1.0933P] where P = (Fo2 + 2Fc2)/3
2103 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.50000.50000.50000.02259 (18)
N10.2750 (6)−0.3207 (4)0.0634 (4)0.0311 (7)
H10.3009−0.39480.12110.037*
N20.3845 (5)0.1765 (3)0.2805 (4)0.0228 (6)
N30.3946 (5)0.3381 (3)0.2979 (3)0.0226 (6)
N40.3283 (5)0.3805 (4)0.1585 (4)0.0259 (7)
N50.2733 (6)0.2488 (4)0.0467 (4)0.0268 (7)
C10.3091 (7)−0.1653 (5)0.1350 (5)0.0294 (8)
H1A0.3598−0.13850.24540.035*
C20.2700 (6)−0.0447 (4)0.0473 (4)0.0204 (7)
C30.1941 (6)−0.0902 (4)−0.1163 (4)0.0253 (8)
H30.1656−0.0105−0.17920.030*
C40.1608 (7)−0.2512 (5)−0.1860 (5)0.0299 (8)
H40.1095−0.2821−0.29620.036*
C50.2037 (7)−0.3666 (5)−0.0919 (5)0.0325 (9)
H50.1825−0.4770−0.13750.039*
C60.3097 (6)0.1261 (4)0.1255 (4)0.0203 (7)
O1W0.3115 (5)0.3482 (4)0.6228 (4)0.0451 (8)
H11W0.32770.24890.63160.068*
H12W0.17790.36570.59740.068*
Cl10.19420 (15)0.63743 (11)0.40795 (11)0.0307 (2)
O2WA0.2969 (13)0.0279 (8)0.5219 (8)0.0506 (16)0.54
H1WA0.33600.06070.45130.076*0.54
H2WA0.16180.03870.50260.076*0.54
O2WB0.1538 (17)0.0200 (10)0.5354 (13)0.068 (3)0.46
H1WB0.2070−0.06990.51680.102*0.46
H2WB0.02790.00020.53940.102*0.46
U11U22U33U12U13U23
Cu10.0278 (3)0.0148 (3)0.0195 (3)0.0024 (2)0.0043 (2)−0.0033 (2)
N10.044 (2)0.0169 (15)0.0295 (17)0.0012 (13)0.0103 (15)0.0029 (13)
N20.0311 (16)0.0122 (13)0.0221 (15)0.0027 (11)0.0069 (13)0.0005 (11)
N30.0298 (16)0.0125 (13)0.0230 (15)0.0038 (11)0.0074 (13)0.0001 (11)
N40.0378 (18)0.0158 (14)0.0215 (15)0.0019 (12)0.0086 (13)0.0007 (11)
N50.0393 (18)0.0169 (14)0.0205 (15)−0.0004 (13)0.0079 (13)0.0002 (12)
C10.042 (2)0.0195 (18)0.0226 (18)−0.0009 (15)0.0086 (16)0.0004 (14)
C20.0228 (16)0.0159 (16)0.0210 (17)0.0006 (12)0.0082 (14)−0.0017 (13)
C30.0301 (19)0.0221 (18)0.0217 (18)0.0010 (14)0.0078 (15)0.0017 (14)
C40.034 (2)0.027 (2)0.0216 (18)−0.0013 (16)0.0075 (16)−0.0072 (15)
C50.038 (2)0.0192 (19)0.035 (2)−0.0013 (16)0.0115 (18)−0.0071 (16)
C60.0215 (16)0.0168 (16)0.0204 (17)−0.0006 (12)0.0064 (13)0.0005 (13)
O1W0.0381 (17)0.0354 (17)0.061 (2)−0.0007 (13)0.0175 (16)0.0064 (15)
Cl10.0299 (5)0.0288 (5)0.0287 (5)0.0066 (4)0.0074 (4)−0.0013 (4)
O2WA0.069 (5)0.034 (3)0.051 (4)0.008 (3)0.023 (4)0.007 (3)
O2WB0.079 (7)0.028 (4)0.109 (8)−0.001 (4)0.051 (6)0.009 (4)
Cu1—N3i1.984 (3)C2—C31.380 (5)
Cu1—N31.984 (3)C2—C61.455 (5)
Cu1—Cl12.3070 (12)C3—C41.362 (5)
Cu1—Cl1i2.3070 (12)C3—H30.9300
Cu1—O1W2.390 (3)C4—C51.365 (6)
Cu1—O1Wi2.390 (3)C4—H40.9300
N1—C51.312 (5)C5—H50.9300
N1—C11.325 (5)O1W—H11W0.8509
N1—H10.8600O1W—H12W0.8482
N2—C61.314 (4)O2WA—H1WA0.8502
N2—N31.326 (4)O2WA—H2WA0.8506
N3—N41.306 (4)O2WA—H1WB0.9761
N4—N51.313 (4)O2WB—H2WA0.3777
N5—C61.327 (5)O2WB—H1WB0.8518
C1—C21.362 (5)O2WB—H2WB0.8501
C1—H1A0.9300
N3i—Cu1—N3180.000 (1)C2—C1—H1A119.9
N3i—Cu1—Cl190.15 (9)C1—C2—C3117.9 (3)
N3—Cu1—Cl189.85 (9)C1—C2—C6120.4 (3)
N3i—Cu1—Cl1i89.85 (9)C3—C2—C6121.7 (3)
N3—Cu1—Cl1i90.15 (9)C4—C3—C2120.3 (4)
Cl1—Cu1—Cl1i180.000 (1)C4—C3—H3119.8
N3i—Cu1—O1W87.13 (12)C2—C3—H3119.8
N3—Cu1—O1W92.87 (12)C3—C4—C5119.1 (4)
Cl1—Cu1—O1W89.21 (9)C3—C4—H4120.4
Cl1i—Cu1—O1W90.79 (9)C5—C4—H4120.4
N3i—Cu1—O1Wi92.87 (12)N1—C5—C4119.6 (3)
N3—Cu1—O1Wi87.13 (12)N1—C5—H5120.2
Cl1—Cu1—O1Wi90.79 (9)C4—C5—H5120.2
Cl1i—Cu1—O1Wi89.21 (9)N2—C6—N5112.5 (3)
O1W—Cu1—O1Wi180.0N2—C6—C2124.4 (3)
C5—N1—C1122.9 (3)N5—C6—C2123.2 (3)
C5—N1—H1118.6Cu1—O1W—H11W124.2
C1—N1—H1118.6Cu1—O1W—H12W112.4
C6—N2—N3103.8 (3)H11W—O1W—H12W110.7
N4—N3—N2109.9 (3)H1WA—O2WA—H2WA109.9
N4—N3—Cu1122.7 (2)H1WA—O2WA—H1WB131.0
N2—N3—Cu1127.4 (2)H2WA—O2WA—H1WB64.2
N3—N4—N5109.5 (3)H2WA—O2WB—H1WB97.6
N4—N5—C6104.4 (3)H2WA—O2WB—H2WB122.2
N1—C1—C2120.2 (4)H1WB—O2WB—H2WB109.3
N1—C1—H1A119.9
D—H···AD—HH···AD···AD—H···A
N1—H1···N4ii0.861.962.763 (4)155
O1W—H11W···O2WA0.851.912.663 (7)146
O1W—H11W···O2WB0.852.082.779 (9)139
O1W—H12W···Cl1iii0.852.423.233 (3)161
O2WA—H1WA···N20.852.072.906 (8)168
O2WB—H1WB···Cl1ii0.852.463.259 (9)156
O2WB—H2WB···O2WBiv0.851.141.89 (2)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N4i0.861.962.763 (4)155
O1W—H11W⋯O2WA0.851.912.663 (7)146
O1W—H11W⋯O2WB0.852.082.779 (9)139
O1W—H12W⋯Cl1ii0.852.423.233 (3)161
O2WA—H1WA⋯N20.852.072.906 (8)168
O2WB—H1WB⋯Cl1i0.852.463.259 (9)156

Symmetry codes: (i) ; (ii) .

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