Literature DB >> 21577713

Bis(μ-cyclo-hexane-1,3-dicarboxyl-ato)-κO:O,O;κO,O:O-bis-[aqua-(1,10-phenanthroline-κN,N')zinc(II)].

Mohd Razali Rizal1, Seik Weng Ng.   

Abstract

The cyclo-hexane-1,3-dicarboxyl-ate dianion in the dinuclear centrosymmetric title compound, [Zn(2)(C(8)H(10)O(4))(2)(C(12)H(8)N(2))(2)(H(2)O)(2)], has a chair conformation with both carboxyl-ate groups in equatorial positions. One carboxyl-ate group chelates a Zn(II) atom, whereas the other binds through one O atom only to confer a six-coordinate status to the N-heterocycle-chelated water-coordinated Zn(II) atom. Adjacent dinuclear mol-ecules are linked by O-H⋯O hydrogen bonds into a linear chain.

Entities:  

Year:  2009        PMID: 21577713      PMCID: PMC2970336          DOI: 10.1107/S1600536809035144

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isostructural manganese(II) analog, see: Thirumurugan et al. (2006 ▶). For a review of the mol­ecular architectures of metal carboxyl­ate adducts of 2,2′-bipyridine-like ligands, see: Ye et al. (2003 ▶).

Experimental

Crystal data

[Zn2(C8H10O4)2(C12H8N2)2(H2O)2] M = 867.50 Monoclinic, a = 9.6172 (2) Å b = 17.4722 (5) Å c = 11.4822 (3) Å β = 104.393 (2)° V = 1868.84 (8) Å3 Z = 2 Mo Kα radiation μ = 1.35 mm−1 T = 100 K 0.20 × 0.16 × 0.15 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.774, T max = 0.823 9952 measured reflections 3289 independent reflections 2706 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.177 S = 1.09 3289 reflections 261 parameters 74 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.17 e Å−3 Δρmin = −0.51 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XSHELL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809035144/tk2534sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035144/tk2534Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn2(C8H10O4)2(C12H8N2)2(H2O)2]F(000) = 896
Mr = 867.50Dx = 1.542 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2661 reflections
a = 9.6172 (2) Åθ = 2.2–26.3°
b = 17.4722 (5) ŵ = 1.35 mm1
c = 11.4822 (3) ÅT = 100 K
β = 104.393 (2)°Block, colorless
V = 1868.84 (8) Å30.20 × 0.16 × 0.15 mm
Z = 2
Bruker SMART APEX diffractometer3289 independent reflections
Radiation source: fine-focus sealed tube2706 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.774, Tmax = 0.823k = −20→20
9952 measured reflectionsl = −10→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.177H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0653P)2 + 9.3251P] where P = (Fo2 + 2Fc2)/3
3289 reflections(Δ/σ)max = 0.001
261 parametersΔρmax = 1.17 e Å3
74 restraintsΔρmin = −0.51 e Å3
xyzUiso*/Ueq
Zn10.70076 (7)0.51170 (4)0.71412 (7)0.0348 (3)
O10.8609 (5)0.5855 (3)0.7036 (5)0.0516 (13)
O20.7359 (6)0.6719 (3)0.5775 (5)0.0541 (14)
O31.1660 (5)0.5852 (3)0.3118 (4)0.0461 (12)
O41.3286 (4)0.5440 (3)0.4667 (4)0.0414 (11)
O1w0.5440 (5)0.5921 (3)0.6510 (4)0.0367 (10)
H110.593 (7)0.626 (3)0.627 (7)0.06 (3)*
H120.471 (5)0.572 (4)0.606 (6)0.05 (2)*
N10.5460 (6)0.4333 (3)0.7566 (5)0.0394 (13)
N20.7539 (6)0.5156 (4)0.9034 (5)0.0495 (16)
C11.1790 (11)0.7240 (5)0.4694 (11)0.085 (3)
H1A1.10880.73180.39120.102*
H1B1.27500.73860.45980.102*
C21.1393 (10)0.7760 (5)0.5650 (11)0.090 (4)
H2A1.21520.77300.64100.108*
H2B1.13220.82980.53710.108*
C30.9953 (11)0.7504 (5)0.5869 (12)0.096 (4)
H3A0.97540.78090.65360.116*
H3B0.91790.76090.51390.116*
C40.9932 (9)0.6721 (5)0.6155 (10)0.070 (3)
H41.06520.66530.69430.084*
C51.0389 (7)0.6182 (4)0.5277 (7)0.0426 (16)
H5A0.96300.61620.45160.051*
H5B1.05170.56590.56200.051*
C61.1801 (9)0.6455 (5)0.5022 (9)0.064 (2)
H61.25340.64150.58080.077*
C71.2268 (6)0.5891 (4)0.4205 (6)0.0369 (15)
C80.8505 (7)0.6411 (4)0.6334 (8)0.0499 (19)
C90.4467 (8)0.3928 (4)0.6845 (8)0.0502 (18)
H90.43020.40130.60040.060*
C100.3633 (9)0.3378 (5)0.7238 (10)0.066 (2)
H100.29320.30940.66750.079*
C110.3834 (10)0.3256 (5)0.8412 (11)0.074 (3)
H11A0.32700.28840.86890.089*
C120.4866 (10)0.3671 (5)0.9239 (8)0.068 (3)
C130.5188 (13)0.3622 (6)1.0544 (11)0.089 (3)
H130.46550.32741.08990.107*
C140.6173 (15)0.4034 (7)1.1242 (10)0.094 (4)
H140.63210.39761.20860.113*
C150.7051 (12)0.4574 (6)1.0810 (8)0.079 (3)
C160.8171 (14)0.5024 (7)1.1488 (10)0.096 (4)
H160.84100.49751.23380.115*
C170.8914 (12)0.5518 (7)1.0997 (10)0.092 (4)
H170.96540.58221.14840.110*
C180.8568 (8)0.5576 (5)0.9736 (7)0.065 (2)
H180.90870.59270.93730.078*
C190.6786 (9)0.4657 (5)0.9548 (6)0.053 (2)
C200.5701 (8)0.4215 (4)0.8787 (7)0.0470 (18)
U11U22U33U12U13U23
Zn10.0269 (4)0.0414 (4)0.0374 (4)−0.0027 (3)0.0104 (3)−0.0022 (3)
O10.031 (2)0.049 (3)0.076 (4)−0.009 (2)0.014 (2)−0.004 (3)
O20.056 (3)0.037 (3)0.078 (4)−0.011 (2)0.033 (3)−0.001 (2)
O30.032 (2)0.060 (3)0.044 (3)0.002 (2)0.004 (2)0.001 (2)
O40.028 (2)0.059 (3)0.037 (3)−0.005 (2)0.0079 (19)0.004 (2)
O1w0.026 (2)0.049 (3)0.035 (3)−0.002 (2)0.008 (2)0.002 (2)
N10.037 (3)0.040 (3)0.046 (3)0.005 (2)0.021 (3)0.007 (3)
N20.040 (3)0.067 (4)0.034 (3)0.026 (3)−0.005 (3)−0.017 (3)
C10.082 (6)0.062 (6)0.138 (10)−0.014 (5)0.079 (7)−0.008 (6)
C20.080 (6)0.057 (5)0.164 (11)−0.035 (5)0.087 (7)−0.049 (6)
C30.086 (7)0.068 (6)0.166 (11)−0.039 (5)0.090 (8)−0.057 (7)
C40.057 (5)0.051 (5)0.120 (8)−0.012 (4)0.057 (5)−0.016 (5)
C50.038 (4)0.040 (4)0.055 (5)−0.008 (3)0.019 (3)−0.001 (3)
C60.055 (5)0.056 (5)0.098 (7)−0.016 (4)0.049 (5)−0.025 (5)
C70.028 (3)0.046 (4)0.040 (4)−0.011 (3)0.015 (3)−0.005 (3)
C80.036 (4)0.047 (4)0.075 (5)−0.006 (3)0.028 (4)−0.022 (4)
C90.044 (4)0.045 (4)0.069 (5)−0.008 (3)0.028 (4)−0.001 (3)
C100.054 (4)0.049 (4)0.109 (7)−0.001 (3)0.047 (5)0.004 (4)
C110.065 (5)0.050 (4)0.126 (7)0.019 (4)0.059 (5)0.028 (5)
C120.085 (5)0.065 (5)0.079 (5)0.053 (4)0.064 (5)0.043 (4)
C130.107 (7)0.086 (6)0.100 (7)0.064 (5)0.073 (6)0.056 (5)
C140.122 (7)0.112 (7)0.062 (6)0.084 (6)0.050 (6)0.036 (5)
C150.091 (6)0.090 (6)0.055 (5)0.067 (5)0.020 (5)0.009 (5)
C160.112 (7)0.108 (7)0.056 (5)0.080 (6)−0.003 (5)−0.018 (5)
C170.077 (6)0.102 (7)0.071 (6)0.055 (5)−0.029 (5)−0.044 (5)
C180.049 (4)0.078 (5)0.053 (4)0.035 (4)−0.015 (4)−0.028 (4)
C190.062 (4)0.067 (5)0.035 (4)0.046 (4)0.019 (3)0.012 (3)
C200.056 (4)0.050 (4)0.045 (4)0.029 (3)0.031 (3)0.018 (3)
Zn1—O12.035 (5)C4—C51.521 (10)
Zn1—O3i2.188 (5)C4—C81.536 (9)
Zn1—O4i2.247 (5)C4—H41.0000
Zn1—O1w2.056 (5)C5—C61.536 (9)
Zn1—N12.166 (5)C5—H5A0.9900
Zn1—N22.107 (6)C5—H5B0.9900
O1—C81.250 (10)C6—C71.504 (10)
O2—C81.251 (9)C6—H61.0000
O3—C71.241 (8)C9—C101.397 (10)
O3—Zn1i2.188 (5)C9—H90.9500
O4—C71.266 (8)C10—C111.331 (14)
O4—Zn1i2.247 (5)C10—H100.9500
O1w—H110.84 (6)C11—C121.394 (14)
O1w—H120.84 (6)C11—H11A0.9500
N1—C91.306 (9)C12—C201.423 (11)
N1—C201.378 (9)C12—C131.456 (15)
N2—C181.331 (10)C13—C141.297 (16)
N2—C191.358 (11)C13—H130.9500
C1—C61.422 (12)C14—C151.434 (17)
C1—C21.544 (12)C14—H140.9500
C1—H1A0.9900C15—C191.416 (11)
C1—H1B0.9900C15—C161.403 (16)
C2—C31.535 (10)C16—C171.331 (17)
C2—H2A0.9900C16—H160.9500
C2—H2B0.9900C17—C181.407 (14)
C3—C41.408 (13)C17—H170.9500
C3—H3A0.9900C18—H180.9500
C3—H3B0.9900C19—C201.412 (12)
O1—Zn1—O3i90.3 (2)C6—C5—H5A109.6
O1—Zn1—O4i98.2 (2)C4—C5—H5B109.6
O1—Zn1—O1w92.6 (2)C6—C5—H5B109.6
O1—Zn1—N292.7 (2)H5A—C5—H5B108.1
O1—Zn1—N1170.6 (2)C1—C6—C7116.8 (8)
O3i—Zn1—O4i58.8 (2)C1—C6—C5113.7 (7)
O3i—Zn1—O1w152.1 (2)C7—C6—C5109.3 (6)
O3i—Zn1—N190.0 (2)C1—C6—H6105.3
O3i—Zn1—N299.5 (2)C7—C6—H6105.3
O4i—Zn1—O1w93.3 (2)C5—C6—H6105.3
O4i—Zn1—N189.9 (2)O3—C7—O4120.6 (6)
O4i—Zn1—N2155.5 (2)O3—C7—C6121.6 (7)
O1w—Zn1—N191.6 (2)O4—C7—C6117.8 (7)
O1w—Zn1—N2108.1 (2)O2—C8—O1125.7 (6)
N1—Zn1—N278.0 (2)O2—C8—C4118.9 (8)
C8—O1—Zn1126.2 (5)O1—C8—C4115.4 (7)
C7—O3—Zn1i91.9 (4)N1—C9—C10123.7 (8)
C7—O4—Zn1i88.6 (4)N1—C9—H9118.1
Zn1—O1w—H11100 (6)C10—C9—H9118.1
Zn1—O1w—H12111 (5)C11—C10—C9119.2 (9)
H11—O1w—H12123 (8)C11—C10—H10120.4
C9—N1—C20118.4 (6)C9—C10—H10120.4
C9—N1—Zn1129.4 (5)C10—C11—C12120.3 (8)
C20—N1—Zn1111.9 (5)C10—C11—H11A119.8
C18—N2—C19119.2 (7)C12—C11—H11A119.8
C18—N2—Zn1126.6 (6)C11—C12—C20118.1 (8)
C19—N2—Zn1114.1 (5)C11—C12—C13127.1 (9)
C6—C1—C2111.5 (8)C20—C12—C13114.9 (10)
C6—C1—H1A109.3C14—C13—C12122.6 (10)
C2—C1—H1A109.3C14—C13—H13118.7
C6—C1—H1B109.3C12—C13—H13118.7
C2—C1—H1B109.3C13—C14—C15123.7 (10)
H1A—C1—H1B108.0C13—C14—H14118.2
C3—C2—C1109.7 (7)C15—C14—H14118.2
C3—C2—H2A109.7C14—C15—C19116.7 (11)
C1—C2—H2A109.7C14—C15—C16127.9 (11)
C3—C2—H2B109.7C19—C15—C16115.4 (11)
C1—C2—H2B109.7C17—C16—C15123.2 (10)
H2A—C2—H2B108.2C17—C16—H16118.4
C4—C3—C2112.8 (8)C15—C16—H16118.4
C4—C3—H3A109.0C16—C17—C18117.9 (11)
C2—C3—H3A109.0C16—C17—H17121.1
C4—C3—H3B109.0C18—C17—H17121.1
C2—C3—H3B109.0N2—C18—C17122.2 (11)
H3A—C3—H3B107.8N2—C18—H18118.9
C3—C4—C5115.1 (8)C17—C18—H18118.9
C3—C4—C8116.0 (7)N2—C19—C20118.3 (6)
C5—C4—C8106.6 (6)N2—C19—C15122.0 (9)
C3—C4—H4106.1C20—C19—C15119.6 (9)
C5—C4—H4106.1N1—C20—C19117.3 (6)
C8—C4—H4106.1N1—C20—C12120.2 (8)
C4—C5—C6110.4 (6)C19—C20—C12122.5 (8)
C4—C5—H5A109.6
O1w—Zn1—O1—C8−26.9 (6)C3—C4—C8—O229.2 (13)
N2—Zn1—O1—C8−135.2 (6)C5—C4—C8—O2−100.4 (8)
O3i—Zn1—O1—C8125.3 (6)C3—C4—C8—O1−151.5 (9)
O4i—Zn1—O1—C866.8 (6)C5—C4—C8—O178.9 (9)
O1w—Zn1—N1—C972.9 (6)C20—N1—C9—C10−0.2 (10)
N2—Zn1—N1—C9−178.9 (6)Zn1—N1—C9—C10172.7 (5)
O3i—Zn1—N1—C9−79.2 (6)N1—C9—C10—C110.8 (12)
O4i—Zn1—N1—C9−20.4 (6)C9—C10—C11—C12−0.2 (12)
O1w—Zn1—N1—C20−113.8 (4)C10—C11—C12—C20−0.9 (11)
N2—Zn1—N1—C20−5.6 (4)C10—C11—C12—C13178.2 (7)
O3i—Zn1—N1—C2094.1 (4)C11—C12—C13—C14−180.0 (9)
O4i—Zn1—N1—C20152.9 (4)C20—C12—C13—C14−0.9 (12)
O1—Zn1—N2—C182.1 (6)C12—C13—C14—C15−0.5 (14)
O1w—Zn1—N2—C18−91.6 (5)C13—C14—C15—C191.1 (13)
N1—Zn1—N2—C18−179.3 (6)C13—C14—C15—C16−177.6 (9)
O3i—Zn1—N2—C1892.8 (6)C14—C15—C16—C17−179.2 (9)
O4i—Zn1—N2—C18118.8 (6)C19—C15—C16—C172.2 (12)
O1—Zn1—N2—C19−173.6 (4)C15—C16—C17—C18−1.2 (14)
O1w—Zn1—N2—C1992.7 (5)C19—N2—C18—C170.5 (10)
N1—Zn1—N2—C195.0 (4)Zn1—N2—C18—C17−175.0 (5)
O3i—Zn1—N2—C19−82.9 (4)C16—C17—C18—N2−0.2 (12)
O4i—Zn1—N2—C19−56.9 (7)C18—N2—C19—C20−179.8 (6)
C6—C1—C2—C3−55.1 (14)Zn1—N2—C19—C20−3.8 (7)
C1—C2—C3—C453.5 (14)C18—N2—C19—C150.6 (9)
C2—C3—C4—C5−52.1 (13)Zn1—N2—C19—C15176.6 (5)
C2—C3—C4—C8−177.5 (9)C14—C15—C19—N2179.3 (6)
C3—C4—C5—C648.8 (11)C16—C15—C19—N2−1.8 (10)
C8—C4—C5—C6178.9 (8)C14—C15—C19—C20−0.2 (10)
C2—C1—C6—C7−176.1 (8)C16—C15—C19—C20178.6 (6)
C2—C1—C6—C555.2 (12)C9—N1—C20—C19179.7 (6)
C4—C5—C6—C1−50.4 (11)Zn1—N1—C20—C195.5 (7)
C4—C5—C6—C7177.0 (8)C9—N1—C20—C12−0.9 (9)
Zn1i—O3—C7—O41.5 (6)Zn1—N1—C20—C12−175.0 (5)
Zn1i—O3—C7—C6−176.8 (5)N2—C19—C20—N1−1.3 (9)
Zn1i—O4—C7—O3−1.4 (6)C15—C19—C20—N1178.3 (6)
Zn1i—O4—C7—C6176.9 (5)N2—C19—C20—C12179.3 (6)
C1—C6—C7—O3−56.5 (10)C15—C19—C20—C12−1.2 (10)
C5—C6—C7—O374.4 (9)C11—C12—C20—N11.4 (9)
C1—C6—C7—O4125.2 (9)C13—C12—C20—N1−177.7 (6)
C5—C6—C7—O4−103.9 (8)C11—C12—C20—C19−179.1 (6)
Zn1—O1—C8—O217.5 (11)C13—C12—C20—C191.7 (9)
Zn1—O1—C8—C4−161.7 (5)
D—H···AD—HH···AD···AD—H···A
O1w—H11···O20.84 (6)1.80 (7)2.614 (6)162 (8)
O1w—H12···O4ii0.84 (6)1.89 (3)2.701 (6)161 (8)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1w—H11⋯O20.84 (6)1.80 (7)2.614 (6)162 (8)
O1w—H12⋯O4i0.84 (6)1.89 (3)2.701 (6)161 (8)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1, 2-, 1, 3- and 1, 4-Cyclohexanedicarboxylates of Cd and Mn with chain and layered structures.

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1.  Bis(μ-biphenyl-2,2'-dicarboxyl-ato)bis-[aqua-(4,4'-dimethyl-2,2'-bipyridine-κN,N')copper(II)].

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  1 in total

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