Literature DB >> 21577709

catena-Poly[[[aqua-(2,2'-bipyridine)manganese(II)]-μ-5-methoxy-iso-phthalato-κO,O':O''] monohydrate].

Su-Mei Shen1.   

Abstract

In the title compound, {[Mn(C(8)H(4)O(4))(C(10)H(8)N(2))(H(2)O)]·H(2)O}(n), the Mn(II) centre is octa-hedrally coordinated by three O atoms from two 5-methoxy-isophthalate (CH(3)O-ip) ligands, a fourth from a coordinated water mol-ecule and two N atoms from one chelating 2,2'-bipyridine (2,2-bipy) ligand. Each pair of adjacent Mn(II) atoms is bridged by a CH(3)O-ip ligand, forming a helical chain running along a crystallographic 2(1) axis in the c-axis direction. These chains are decorated with 2,2'-bipy ligands on alternating sides. O-H⋯O hydrogen bonding involving the water molecules stabilizes the crystal structure.

Entities:  

Year:  2009        PMID: 21577709      PMCID: PMC2970467          DOI: 10.1107/S1600536809035466

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chen & Liu, (2002 ▶); Liu et al. (2009 ▶). For the design and controlled synthesis of metal-organic frameworks, see: Kitagawa et al. (2004 ▶). For the use of 5-methoxy­isophthalic acid in synthesis of self-asssembly of porous coord­in­ation compounds, see: Ma et al. (2009 ▶).

Experimental

Crystal data

[Mn(C8H4O4)(C10H8N2)(H2O)]·H2O M = 441.29 Monoclinic, a = 8.9067 (13) Å b = 17.367 (3) Å c = 12.5804 (18) Å β = 97.176 (2)° V = 1930.7 (5) Å3 Z = 4 Mo Kα radiation μ = 0.73 mm−1 T = 298 K 0.19 × 0.14 × 0.09 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.874, T max = 0.937 11370 measured reflections 3470 independent reflections 2275 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.091 S = 1.02 3470 reflections 275 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT (Bruker, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809035466/bg2299sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809035466/bg2299Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C8H4O4)(C10H8N2)(H2O)]·H2OF(000) = 908
Mr = 441.29Dx = 1.518 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3462 reflections
a = 8.9067 (13) Åθ = 2.6–25.2°
b = 17.367 (3) ŵ = 0.73 mm1
c = 12.5804 (18) ÅT = 298 K
β = 97.176 (2)°Block, yellow
V = 1930.7 (5) Å30.19 × 0.14 × 0.09 mm
Z = 4
Bruker APEXII area-detector diffractometer3470 independent reflections
Radiation source: fine-focus sealed tube2275 reflections with I > 2σ(I)
graphiteRint = 0.061
φ and ω scansθmax = 25.2°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.874, Tmax = 0.937k = −20→20
11370 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0276P)2 + 0.6024P] where P = (Fo2 + 2Fc2)/3
3470 reflections(Δ/σ)max = 0.001
275 parametersΔρmax = 0.26 e Å3
6 restraintsΔρmin = −0.29 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.86083 (5)0.64881 (3)0.57766 (4)0.03184 (15)
O10.7990 (3)0.77011 (13)0.48474 (19)0.0610 (8)
O20.9562 (3)0.76311 (12)0.63126 (18)0.0498 (7)
O31.0696 (2)1.00516 (13)0.85451 (17)0.0443 (6)
O41.0246 (3)1.11522 (13)0.77017 (18)0.0507 (7)
O50.6696 (3)1.04731 (14)0.43566 (19)0.0708 (9)
N10.6456 (3)0.66681 (15)0.6502 (2)0.0391 (7)
N20.6681 (3)0.60012 (15)0.4629 (2)0.0337 (6)
C10.8656 (4)0.88801 (18)0.5761 (3)0.0330 (8)
C20.9443 (3)0.92408 (18)0.6647 (2)0.0332 (8)
H21.00490.89520.71550.040*
C30.9327 (3)1.00281 (18)0.6774 (2)0.0310 (7)
C40.8419 (4)1.04587 (19)0.6018 (3)0.0418 (9)
H40.83431.09890.61020.050*
C50.7631 (4)1.0102 (2)0.5143 (3)0.0453 (9)
C60.7755 (4)0.93092 (18)0.5017 (3)0.0417 (9)
H60.72250.90680.44250.050*
C70.8744 (4)0.80229 (19)0.5621 (3)0.0402 (9)
C81.0148 (3)1.0427 (2)0.7738 (3)0.0348 (8)
C90.6513 (6)1.1283 (2)0.4467 (3)0.0872 (17)
H9A0.61161.13890.51270.131*
H9B0.58241.14730.38780.131*
H9C0.74751.15320.44710.131*
C100.6399 (4)0.7003 (2)0.7453 (3)0.0499 (10)
H100.73090.71320.78600.060*
C110.5089 (4)0.7168 (2)0.7862 (3)0.0554 (10)
H110.51070.74070.85260.067*
C120.3748 (4)0.6973 (2)0.7273 (3)0.0607 (11)
H120.28350.70730.75330.073*
C130.3765 (4)0.6624 (2)0.6285 (3)0.0527 (10)
H130.28620.64920.58720.063*
C140.5131 (3)0.64735 (19)0.5918 (2)0.0348 (8)
C150.5263 (3)0.60952 (18)0.4878 (2)0.0317 (8)
C160.4026 (4)0.5843 (2)0.4195 (3)0.0468 (9)
H160.30560.59030.43830.056*
C170.4231 (4)0.5504 (2)0.3238 (3)0.0532 (10)
H170.34030.53390.27690.064*
C180.5661 (4)0.5414 (2)0.2983 (3)0.0523 (10)
H180.58290.51870.23380.063*
C190.6858 (4)0.5666 (2)0.3703 (3)0.0457 (9)
H190.78360.55980.35310.055*
O61.0261 (3)0.62274 (13)0.47247 (18)0.0421 (6)
H1W1.037 (4)0.6603 (12)0.432 (2)0.063*
H2W1.033 (4)0.5804 (11)0.440 (2)0.063*
O70.0671 (3)0.74055 (16)0.3430 (2)0.0584 (7)
H3W0.041 (4)0.734 (2)0.2772 (16)0.088*
H4W0.016 (4)0.7774 (18)0.364 (3)0.088*
U11U22U33U12U13U23
Mn10.0319 (3)0.0319 (3)0.0307 (3)−0.0004 (2)0.0002 (2)−0.0032 (2)
O10.098 (2)0.0369 (15)0.0428 (15)−0.0028 (14)−0.0116 (15)−0.0114 (13)
O20.0714 (17)0.0300 (14)0.0447 (15)0.0034 (12)−0.0057 (13)0.0006 (12)
O30.0495 (15)0.0450 (15)0.0357 (14)−0.0025 (12)−0.0049 (11)0.0000 (12)
O40.0683 (17)0.0278 (14)0.0521 (16)−0.0073 (12)−0.0081 (13)−0.0043 (12)
O50.107 (2)0.0441 (16)0.0505 (16)0.0136 (16)−0.0334 (16)0.0026 (14)
N10.0396 (16)0.0476 (18)0.0297 (16)0.0028 (14)0.0037 (13)−0.0038 (14)
N20.0332 (15)0.0381 (17)0.0299 (15)−0.0007 (13)0.0046 (12)−0.0070 (13)
C10.047 (2)0.0278 (17)0.0244 (17)−0.0025 (16)0.0053 (15)−0.0002 (15)
C20.0362 (19)0.033 (2)0.0303 (19)−0.0003 (15)0.0046 (15)0.0053 (15)
C30.0375 (18)0.0296 (19)0.0264 (18)−0.0064 (15)0.0063 (14)−0.0025 (15)
C40.058 (2)0.0267 (18)0.039 (2)0.0013 (17)−0.0033 (18)−0.0013 (16)
C50.062 (2)0.039 (2)0.032 (2)0.0034 (18)−0.0067 (18)0.0023 (17)
C60.060 (2)0.030 (2)0.032 (2)−0.0023 (17)−0.0035 (18)−0.0043 (16)
C70.056 (2)0.033 (2)0.033 (2)−0.0039 (18)0.0117 (18)−0.0007 (17)
C80.0336 (19)0.036 (2)0.036 (2)−0.0019 (16)0.0068 (16)−0.0061 (17)
C90.140 (5)0.044 (3)0.065 (3)0.029 (3)−0.036 (3)0.000 (2)
C100.050 (2)0.066 (3)0.034 (2)−0.001 (2)0.0065 (18)−0.0099 (19)
C110.065 (3)0.066 (3)0.037 (2)0.013 (2)0.017 (2)−0.006 (2)
C120.050 (2)0.079 (3)0.058 (3)0.015 (2)0.024 (2)0.000 (2)
C130.037 (2)0.071 (3)0.050 (2)0.006 (2)0.0069 (17)−0.004 (2)
C140.0328 (17)0.0364 (19)0.0352 (19)0.0041 (16)0.0035 (15)0.0046 (17)
C150.0284 (18)0.0344 (19)0.0323 (19)0.0017 (14)0.0035 (14)0.0018 (15)
C160.0317 (19)0.067 (3)0.041 (2)−0.0044 (18)0.0006 (16)−0.007 (2)
C170.047 (2)0.069 (3)0.041 (2)−0.015 (2)−0.0054 (18)−0.011 (2)
C180.050 (2)0.068 (3)0.038 (2)−0.006 (2)0.0030 (19)−0.016 (2)
C190.038 (2)0.060 (3)0.040 (2)0.0013 (18)0.0044 (17)−0.0136 (19)
O60.0435 (14)0.0394 (14)0.0444 (16)−0.0025 (13)0.0090 (12)−0.0006 (12)
O70.0654 (19)0.0565 (19)0.0529 (17)0.0004 (14)0.0060 (15)0.0046 (15)
Mn1—O4i2.135 (2)C5—C61.392 (4)
Mn1—O62.147 (2)C6—H60.9300
Mn1—O22.230 (2)C9—H9A0.9600
Mn1—N12.246 (3)C9—H9B0.9600
Mn1—N22.264 (2)C9—H9C0.9600
Mn1—O12.439 (2)C10—C111.364 (5)
O1—C71.244 (4)C10—H100.9300
O2—C71.261 (4)C11—C121.368 (5)
O3—C81.254 (4)C11—H110.9300
O4—C81.263 (4)C12—C131.384 (5)
O4—Mn1ii2.135 (2)C12—H120.9300
O5—C51.372 (4)C13—C141.379 (4)
O5—C91.424 (4)C13—H130.9300
N1—C101.337 (4)C14—C151.482 (4)
N1—C141.353 (4)C15—C161.381 (4)
N2—C191.330 (4)C16—C171.373 (5)
N2—C151.349 (4)C16—H160.9300
C1—C61.375 (4)C17—C181.361 (5)
C1—C21.389 (4)C17—H170.9300
C1—C71.502 (4)C18—C191.381 (4)
C2—C31.382 (4)C18—H180.9300
C2—H20.9300C19—H190.9300
C3—C41.388 (4)O6—H1W0.837 (17)
C3—C81.504 (4)O6—H2W0.846 (17)
C4—C51.376 (4)O7—H3W0.839 (18)
C4—H40.9300O7—H4W0.847 (18)
O4i—Mn1—O6101.98 (9)O2—C7—C1119.2 (3)
O4i—Mn1—O281.42 (9)O3—C8—O4121.7 (3)
O6—Mn1—O296.29 (9)O3—C8—C3120.9 (3)
O4i—Mn1—N190.59 (9)O4—C8—C3117.4 (3)
O6—Mn1—N1164.94 (9)O5—C9—H9A109.5
O2—Mn1—N193.75 (9)O5—C9—H9B109.5
O4i—Mn1—N2135.16 (10)H9A—C9—H9B109.5
O6—Mn1—N292.96 (9)O5—C9—H9C109.5
O2—Mn1—N2139.02 (9)H9A—C9—H9C109.5
N1—Mn1—N272.15 (9)H9B—C9—H9C109.5
O4i—Mn1—O1136.04 (9)N1—C10—C11124.0 (3)
O6—Mn1—O191.03 (9)N1—C10—H10118.0
O2—Mn1—O155.30 (8)C11—C10—H10118.0
N1—Mn1—O185.48 (9)C10—C11—C12118.3 (3)
N2—Mn1—O184.78 (9)C10—C11—H11120.9
C7—O1—Mn186.9 (2)C12—C11—H11120.9
C7—O2—Mn196.11 (19)C11—C12—C13119.2 (4)
C8—O4—Mn1ii105.5 (2)C11—C12—H12120.4
C5—O5—C9117.4 (3)C13—C12—H12120.4
C10—N1—C14117.8 (3)C14—C13—C12119.5 (3)
C10—N1—Mn1123.6 (2)C14—C13—H13120.2
C14—N1—Mn1118.4 (2)C12—C13—H13120.2
C19—N2—C15118.3 (3)N1—C14—C13121.1 (3)
C19—N2—Mn1124.0 (2)N1—C14—C15115.5 (3)
C15—N2—Mn1117.7 (2)C13—C14—C15123.4 (3)
C6—C1—C2119.7 (3)N2—C15—C16121.0 (3)
C6—C1—C7119.5 (3)N2—C15—C14116.0 (3)
C2—C1—C7120.8 (3)C16—C15—C14123.0 (3)
C3—C2—C1120.1 (3)C17—C16—C15119.9 (3)
C3—C2—H2119.9C17—C16—H16120.0
C1—C2—H2119.9C15—C16—H16120.0
C2—C3—C4119.9 (3)C18—C17—C16119.2 (3)
C2—C3—C8120.9 (3)C18—C17—H17120.4
C4—C3—C8119.1 (3)C16—C17—H17120.4
C5—C4—C3120.1 (3)C17—C18—C19118.5 (3)
C5—C4—H4120.0C17—C18—H18120.7
C3—C4—H4120.0C19—C18—H18120.7
O5—C5—C4124.6 (3)N2—C19—C18123.2 (3)
O5—C5—C6115.6 (3)N2—C19—H19118.4
C4—C5—C6119.8 (3)C18—C19—H19118.4
C1—C6—C5120.4 (3)Mn1—O6—H1W110 (2)
C1—C6—H6119.8Mn1—O6—H2W125 (2)
C5—C6—H6119.8H1W—O6—H2W112 (3)
O1—C7—O2120.4 (3)H3W—O7—H4W108 (3)
O1—C7—C1120.4 (3)
O4i—Mn1—O1—C75.0 (3)O5—C5—C6—C1−179.7 (3)
O6—Mn1—O1—C7−103.5 (2)C4—C5—C6—C10.2 (5)
O2—Mn1—O1—C7−6.56 (19)Mn1—O1—C7—O211.1 (3)
N1—Mn1—O1—C791.2 (2)Mn1—O1—C7—C1−167.1 (3)
N2—Mn1—O1—C7163.6 (2)Mn1—O2—C7—O1−12.2 (4)
O4i—Mn1—O2—C7−165.4 (2)Mn1—O2—C7—C1166.0 (3)
O6—Mn1—O2—C793.4 (2)C6—C1—C7—O1−1.1 (5)
N1—Mn1—O2—C7−75.4 (2)C2—C1—C7—O1177.2 (3)
N2—Mn1—O2—C7−8.5 (3)C6—C1—C7—O2−179.3 (3)
O1—Mn1—O2—C76.50 (19)C2—C1—C7—O2−1.0 (5)
O4i—Mn1—N1—C1041.7 (3)Mn1ii—O4—C8—O3−1.6 (4)
O6—Mn1—N1—C10−171.5 (3)Mn1ii—O4—C8—C3177.8 (2)
O2—Mn1—N1—C10−39.8 (3)C2—C3—C8—O3−14.7 (5)
N2—Mn1—N1—C10179.6 (3)C4—C3—C8—O3164.0 (3)
O1—Mn1—N1—C10−94.5 (3)C2—C3—C8—O4166.0 (3)
O4i—Mn1—N1—C14−142.8 (2)C4—C3—C8—O4−15.4 (4)
O6—Mn1—N1—C144.0 (5)C14—N1—C10—C11−0.8 (5)
O2—Mn1—N1—C14135.8 (2)Mn1—N1—C10—C11174.8 (3)
N2—Mn1—N1—C14−4.9 (2)N1—C10—C11—C120.7 (6)
O1—Mn1—N1—C1481.0 (2)C10—C11—C12—C13−0.6 (6)
O4i—Mn1—N2—C19−107.3 (3)C11—C12—C13—C140.6 (6)
O6—Mn1—N2—C193.0 (3)C10—N1—C14—C130.8 (5)
O2—Mn1—N2—C19106.1 (3)Mn1—N1—C14—C13−175.0 (3)
N1—Mn1—N2—C19−179.3 (3)C10—N1—C14—C15−179.2 (3)
O1—Mn1—N2—C1993.7 (3)Mn1—N1—C14—C155.0 (4)
O4i—Mn1—N2—C1576.3 (3)C12—C13—C14—N1−0.7 (5)
O6—Mn1—N2—C15−173.4 (2)C12—C13—C14—C15179.3 (3)
O2—Mn1—N2—C15−70.3 (3)C19—N2—C15—C160.6 (5)
N1—Mn1—N2—C154.3 (2)Mn1—N2—C15—C16177.2 (2)
O1—Mn1—N2—C15−82.6 (2)C19—N2—C15—C14−179.9 (3)
C6—C1—C2—C3−0.4 (5)Mn1—N2—C15—C14−3.3 (4)
C7—C1—C2—C3−178.7 (3)N1—C14—C15—N2−1.0 (4)
C1—C2—C3—C40.2 (5)C13—C14—C15—N2178.9 (3)
C1—C2—C3—C8178.9 (3)N1—C14—C15—C16178.4 (3)
C2—C3—C4—C50.2 (5)C13—C14—C15—C16−1.6 (5)
C8—C3—C4—C5−178.5 (3)N2—C15—C16—C17−1.2 (5)
C9—O5—C5—C4−1.1 (6)C14—C15—C16—C17179.3 (3)
C9—O5—C5—C6178.7 (4)C15—C16—C17—C180.8 (6)
C3—C4—C5—O5179.5 (3)C16—C17—C18—C190.1 (6)
C3—C4—C5—C6−0.4 (5)C15—N2—C19—C180.4 (5)
C2—C1—C6—C50.2 (5)Mn1—N2—C19—C18−176.0 (3)
C7—C1—C6—C5178.6 (3)C17—C18—C19—N2−0.8 (6)
D—H···AD—HH···AD···AD—H···A
O6—H1W···O7iii0.84 (2)1.83 (2)2.668 (4)178 (4)
O6—H2W···O3iv0.85 (2)1.89 (2)2.726 (3)171 (3)
O7—H3W···O2v0.84 (2)1.90 (2)2.724 (3)169 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H1W⋯O7i0.837 (17)1.832 (18)2.668 (4)178 (4)
O6—H2W⋯O3ii0.846 (17)1.888 (19)2.726 (3)171 (3)
O7—H3W⋯O2iii0.839 (18)1.90 (2)2.724 (3)169 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

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4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Coordination polymers of 5-substituted isophthalic acid.

Authors:  Laura J McCormick; Samuel A Morris; Alexandra M Z Slawin; Simon J Teat; Russell E Morris
Journal:  CrystEngComm       Date:  2015-12-21       Impact factor: 3.545

  1 in total

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