Literature DB >> 21577681

2,2-Dimethyl-5-(1-naphthyl-amino-methyl-ene)-1,3-dioxane-4,6-dione.

Zhi Li1, Rui Li, Zhen-Yu Ding.   

Abstract

The benzyl ring of the title compound, C(17)H(15)NO(4), is twisted away from the plane defined by five atoms of the dioxane ring by 34.83 (4)°. The dioxane ring exhibits a half-boat conformation, with the C atom between the dioxane O atoms 0.571 (8) Å out of the plane through the remainder of the ring. An intra-molecular N-H⋯O hydrogen bond may contribute to the stabilization of the planar conformation of the mol-ecule. In the crystal, inversion dimers linked by pairs of C-H⋯O bonds occur.

Entities:  

Year:  2009        PMID: 21577681      PMCID: PMC2969915          DOI: 10.1107/S1600536809033984

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of related compounds, see: Cassis et al. (1985 ▶). For the pharmacological activity of 4(1H)-quinolone structures, see: Ruchelman et al. (2003 ▶).

Experimental

Crystal data

C17H15NO4 M = 297.30 Triclinic, a = 7.4696 (11) Å b = 8.0805 (12) Å c = 12.1240 (18) Å α = 98.601 (2)° β = 96.428 (2)° γ = 92.198 (2)° V = 717.87 (18) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 153 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 4513 measured reflections 3194 independent reflections 2571 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.110 S = 1.03 3194 reflections 206 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033984/ez2178sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033984/ez2178Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15NO4Z = 2
Mr = 297.30F(000) = 312
Triclinic, P1Dx = 1.375 Mg m3
a = 7.4696 (11) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.0805 (12) ÅCell parameters from 2197 reflections
c = 12.1240 (18) Åθ = 2.6–27.5°
α = 98.601 (2)°µ = 0.10 mm1
β = 96.428 (2)°T = 153 K
γ = 92.198 (2)°Block, colourless
V = 717.87 (18) Å30.25 × 0.20 × 0.20 mm
Bruker SMART CCD area-detector diffractometer2571 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.014
graphiteθmax = 27.6°, θmin = 2.6°
φ and ω scansh = −9→6
4513 measured reflectionsk = −10→10
3194 independent reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.110w = 1/[σ2(Fo2) + (0.0462P)2 + 0.1278P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3194 reflectionsΔρmax = 0.18 e Å3
206 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.204 (9)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.75507 (13)0.44446 (12)0.48110 (8)0.0482 (3)
O20.61634 (12)0.29559 (12)0.60505 (7)0.0468 (3)
O30.66547 (15)0.40648 (13)0.29855 (8)0.0567 (3)
O40.36615 (13)0.13711 (12)0.54766 (8)0.0501 (3)
N10.41749 (15)0.15238 (15)0.21325 (9)0.0431 (3)
H10.496 (3)0.236 (2)0.2012 (15)0.074 (5)*
C10.9036 (2)0.21096 (19)0.54644 (13)0.0529 (4)
H1A0.92470.15110.61090.079*
H1B1.01930.25410.52810.079*
H1C0.84320.13400.48160.079*
C20.8669 (2)0.4816 (2)0.67397 (13)0.0583 (4)
H2A0.78300.57040.68870.087*
H2B0.98090.53060.65710.087*
H2C0.88950.42620.74040.087*
C30.78588 (18)0.35520 (17)0.57518 (11)0.0433 (3)
C40.64805 (18)0.36396 (16)0.38885 (11)0.0420 (3)
C50.51881 (17)0.23873 (16)0.40821 (10)0.0384 (3)
C60.49111 (17)0.21600 (16)0.52166 (10)0.0393 (3)
C70.41364 (17)0.14044 (16)0.32061 (10)0.0401 (3)
H70.33220.05790.33850.048*
C80.32676 (17)0.04147 (17)0.12053 (10)0.0412 (3)
C90.2809 (2)−0.12053 (18)0.12899 (12)0.0502 (3)
H90.3068−0.16050.19860.060*
C100.1953 (2)−0.2285 (2)0.03460 (14)0.0598 (4)
H100.1584−0.33990.04160.072*
C110.1648 (2)−0.1750 (2)−0.06667 (13)0.0593 (4)
H110.1097−0.2505−0.13010.071*
C120.21389 (18)−0.0086 (2)−0.07868 (11)0.0495 (4)
C130.1908 (2)0.0502 (3)−0.18422 (12)0.0624 (5)
H130.1415−0.0247−0.24950.075*
C140.2376 (2)0.2106 (3)−0.19338 (13)0.0663 (5)
H140.22470.2460−0.26500.080*
C150.3050 (2)0.3242 (2)−0.09805 (13)0.0608 (4)
H150.33250.4378−0.10470.073*
C160.3315 (2)0.2734 (2)0.00486 (12)0.0513 (4)
H160.37750.35210.06900.062*
C170.29151 (17)0.10513 (18)0.01706 (10)0.0428 (3)
U11U22U33U12U13U23
O10.0558 (6)0.0465 (5)0.0405 (5)−0.0043 (4)−0.0028 (4)0.0094 (4)
O20.0450 (5)0.0633 (6)0.0309 (5)−0.0001 (4)0.0023 (4)0.0057 (4)
O30.0686 (7)0.0633 (6)0.0400 (6)−0.0081 (5)0.0034 (5)0.0195 (5)
O40.0499 (6)0.0620 (6)0.0394 (5)−0.0027 (5)0.0111 (4)0.0081 (4)
N10.0441 (6)0.0532 (7)0.0315 (6)0.0003 (5)0.0015 (4)0.0076 (5)
C10.0452 (8)0.0568 (8)0.0550 (9)0.0065 (6)−0.0014 (6)0.0080 (7)
C20.0610 (9)0.0622 (9)0.0457 (8)−0.0021 (7)−0.0061 (7)−0.0001 (7)
C30.0440 (7)0.0503 (7)0.0346 (7)0.0002 (6)0.0001 (5)0.0074 (5)
C40.0478 (7)0.0433 (7)0.0349 (7)0.0044 (5)0.0014 (5)0.0081 (5)
C50.0398 (7)0.0448 (7)0.0311 (6)0.0056 (5)0.0023 (5)0.0079 (5)
C60.0398 (7)0.0447 (7)0.0335 (6)0.0069 (5)0.0037 (5)0.0055 (5)
C70.0391 (7)0.0483 (7)0.0341 (6)0.0060 (5)0.0047 (5)0.0087 (5)
C80.0357 (6)0.0547 (8)0.0322 (6)0.0057 (5)0.0033 (5)0.0030 (5)
C90.0539 (8)0.0557 (8)0.0414 (7)0.0080 (6)0.0071 (6)0.0062 (6)
C100.0617 (10)0.0548 (9)0.0594 (10)0.0020 (7)0.0080 (7)−0.0026 (7)
C110.0517 (9)0.0699 (10)0.0475 (9)0.0058 (7)−0.0028 (7)−0.0136 (7)
C120.0386 (7)0.0714 (9)0.0354 (7)0.0127 (6)0.0010 (5)−0.0017 (6)
C130.0523 (9)0.0978 (13)0.0327 (7)0.0195 (8)−0.0036 (6)−0.0017 (8)
C140.0590 (10)0.1060 (14)0.0386 (8)0.0215 (9)0.0055 (7)0.0229 (9)
C150.0567 (9)0.0829 (11)0.0477 (9)0.0095 (8)0.0052 (7)0.0246 (8)
C160.0489 (8)0.0663 (9)0.0391 (7)0.0034 (7)0.0023 (6)0.0119 (6)
C170.0343 (6)0.0622 (8)0.0315 (6)0.0089 (6)0.0040 (5)0.0044 (6)
O1—C41.3622 (15)C7—H70.9500
O1—C31.4403 (15)C8—C91.362 (2)
O2—C61.3632 (15)C8—C171.4271 (18)
O2—C31.4405 (16)C9—C101.405 (2)
O3—C41.2142 (15)C9—H90.9500
O4—C61.2072 (15)C10—C111.360 (2)
N1—C71.3229 (16)C10—H100.9500
N1—C81.4170 (16)C11—C121.413 (2)
N1—H10.920 (18)C11—H110.9500
C1—C31.510 (2)C12—C171.4204 (19)
C1—H1A0.9800C12—C131.425 (2)
C1—H1B0.9800C13—C141.353 (3)
C1—H1C0.9800C13—H130.9500
C2—C31.5063 (19)C14—C151.396 (2)
C2—H2A0.9800C14—H140.9500
C2—H2B0.9800C15—C161.367 (2)
C2—H2C0.9800C15—H150.9500
C4—C51.4345 (18)C16—C171.414 (2)
C5—C71.3743 (17)C16—H160.9500
C5—C61.4508 (17)
C4—O1—C3116.84 (10)N1—C7—H7117.6
C6—O2—C3118.48 (10)C5—C7—H7117.6
C7—N1—C8126.21 (12)C9—C8—N1121.29 (12)
C7—N1—H1113.8 (11)C9—C8—C17121.54 (12)
C8—N1—H1119.7 (11)N1—C8—C17117.13 (12)
C3—C1—H1A109.5C8—C9—C10119.85 (14)
C3—C1—H1B109.5C8—C9—H9120.1
H1A—C1—H1B109.5C10—C9—H9120.1
C3—C1—H1C109.5C11—C10—C9120.64 (15)
H1A—C1—H1C109.5C11—C10—H10119.7
H1B—C1—H1C109.5C9—C10—H10119.7
C3—C2—H2A109.5C10—C11—C12120.82 (14)
C3—C2—H2B109.5C10—C11—H11119.6
H2A—C2—H2B109.5C12—C11—H11119.6
C3—C2—H2C109.5C11—C12—C17119.39 (13)
H2A—C2—H2C109.5C11—C12—C13122.49 (14)
H2B—C2—H2C109.5C17—C12—C13118.11 (15)
O1—C3—O2110.06 (10)C14—C13—C12121.36 (15)
O1—C3—C2106.69 (11)C14—C13—H13119.3
O2—C3—C2105.71 (11)C12—C13—H13119.3
O1—C3—C1109.85 (11)C13—C14—C15120.28 (15)
O2—C3—C1110.62 (11)C13—C14—H14119.9
C2—C3—C1113.75 (12)C15—C14—H14119.9
O3—C4—O1118.14 (12)C16—C15—C14120.52 (16)
O3—C4—C5125.52 (12)C16—C15—H15119.7
O1—C4—C5116.31 (11)C14—C15—H15119.7
C7—C5—C4121.36 (11)C15—C16—C17120.84 (15)
C7—C5—C6117.92 (11)C15—C16—H16119.6
C4—C5—C6120.69 (11)C17—C16—H16119.6
O4—C6—O2118.28 (11)C16—C17—C12118.73 (13)
O4—C6—C5125.74 (12)C16—C17—C8123.65 (12)
O2—C6—C5115.95 (11)C12—C17—C8117.61 (13)
N1—C7—C5124.76 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1···O30.920 (18)1.982 (18)2.7130 (16)135.2 (15)
C1—H1C···O4i0.982.603.3709 (19)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O30.920 (18)1.982 (18)2.7130 (16)135.2 (15)
C1—H1C⋯O4i0.982.603.3709 (19)136

Symmetry code: (i) .

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