Literature DB >> 21577655

N'-(5-Bromo-2-hydr-oxy-3-methoxy-benzyl-idene)-4-hydr-oxy-3-methoxy-benzohydrazide dihydrate.

Jiu-Fu Lu, Suo-Tian Min, Hong-Guang Ge, Xiao-Hui Ji, Yue-Fei Bai.   

Abstract

In the title compound, C(16)H(15)BrN(2)O(5)·2H(2)O, the dihedral angle between the two aromatic rings is 2.9 (2)° and an intra-molecular O-H⋯N hydrogen bond is observed. One of the water mol-ecule is disordered over two positions, with occupancies of 0.83 (3) and 0.17 (3). In the crystal structure, mol-ecules are linked into a three-dimensional network by inter-molecular O-H⋯O, O-H⋯(O,O), O-H⋯N and N-H⋯O hydrogen bonds. π-π inter-actions involving Br-substituted benzene rings, with a centroid-centroid distance of 3.552 (3) Å are also observed.

Entities:  

Year:  2009        PMID: 21577655      PMCID: PMC2970095          DOI: 10.1107/S1600536809033522

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Lu et al. (2008a ▶,b ▶,c ▶); Abdul Alhadi et al. (2009 ▶); Mohd Lair et al. (2009 ▶); Narayana et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C16H15BrN2O5·2H2O M = 431.24 Monoclinic, a = 9.262 (2) Å b = 8.679 (2) Å c = 24.289 (5) Å β = 112.42 (3)° V = 1804.9 (8) Å3 Z = 4 Mo Kα radiation μ = 2.32 mm−1 T = 298 K 0.23 × 0.20 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.618, T max = 0.654 14447 measured reflections 3897 independent reflections 1997 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.135 S = 1.02 3897 reflections 261 parameters 20 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.53 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809033522/ci2888sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033522/ci2888Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15BrN2O5·2H2OF(000) = 880
Mr = 431.24Dx = 1.587 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1489 reflections
a = 9.262 (2) Åθ = 2.4–24.5°
b = 8.679 (2) ŵ = 2.32 mm1
c = 24.289 (5) ÅT = 298 K
β = 112.42 (3)°Block, colourless
V = 1804.9 (8) Å30.23 × 0.20 × 0.20 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer3897 independent reflections
Radiation source: fine-focus sealed tube1997 reflections with I > 2σ(I)
graphiteRint = 0.074
ω scansθmax = 27.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −11→11
Tmin = 0.618, Tmax = 0.654k = −11→11
14447 measured reflectionsl = −30→30
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + 0.9035P] where P = (Fo2 + 2Fc2)/3
3897 reflections(Δ/σ)max = 0.001
261 parametersΔρmax = 0.32 e Å3
20 restraintsΔρmin = −0.53 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br10.61788 (6)−0.03732 (7)−0.13511 (3)0.0778 (3)
O10.3146 (3)0.3022 (4)0.00769 (14)0.0605 (9)
H10.37760.35170.03510.091*
O20.1468 (3)0.1263 (4)−0.07827 (14)0.0692 (10)
O30.4712 (3)0.5527 (4)0.14385 (13)0.0601 (8)
O41.1183 (3)0.7762 (3)0.28824 (13)0.0570 (8)
O50.9838 (3)0.9110 (3)0.35146 (13)0.0504 (8)
H50.93050.95200.36760.076*
N10.5836 (4)0.4024 (4)0.07415 (15)0.0448 (9)
N20.6775 (4)0.4898 (4)0.12135 (14)0.0446 (9)
H20.78080.47910.13200.054*
C10.5494 (5)0.2381 (5)−0.00796 (18)0.0422 (10)
C20.3905 (5)0.2269 (5)−0.02205 (19)0.0450 (10)
C30.3019 (5)0.1318 (5)−0.06863 (19)0.0483 (11)
C40.3704 (5)0.0548 (5)−0.10141 (19)0.0516 (11)
H40.3102−0.0075−0.13300.062*
C50.5288 (5)0.0694 (5)−0.08767 (19)0.0515 (11)
C60.6186 (5)0.1586 (5)−0.04129 (18)0.0477 (11)
H60.72550.1665−0.03190.057*
C70.6451 (5)0.3319 (5)0.04189 (19)0.0476 (11)
H70.75160.34120.05060.057*
C80.6112 (5)0.5611 (5)0.15561 (18)0.0434 (10)
C90.7141 (4)0.6511 (4)0.20645 (17)0.0392 (10)
C100.8737 (5)0.6677 (4)0.22134 (18)0.0421 (10)
H100.92130.61950.19850.050*
C110.9612 (4)0.7545 (4)0.26950 (18)0.0395 (10)
C120.8909 (5)0.8267 (4)0.30448 (17)0.0389 (10)
C130.7334 (5)0.8129 (5)0.28971 (18)0.0468 (11)
H130.68560.86220.31230.056*
C140.6469 (5)0.7260 (5)0.24137 (19)0.0476 (11)
H140.54000.71680.23160.057*
C150.0554 (6)0.0149 (6)−0.1176 (2)0.0779 (16)
H15A0.04660.0389−0.15730.117*
H15B−0.04680.0134−0.11610.117*
H15C0.1033−0.0844−0.10630.117*
C161.1985 (5)0.7209 (6)0.2527 (2)0.0680 (14)
H16A1.18880.61090.24930.102*
H16B1.30690.74840.27090.102*
H16C1.15390.76620.21370.102*
O6A0.1601 (5)0.5145 (11)0.0818 (2)0.061 (3)0.83 (3)
H6A0.248 (2)0.553 (4)0.1037 (19)0.091*
H6B0.108 (4)0.591 (4)0.0621 (18)0.091*
O6B0.161 (3)0.596 (5)0.0998 (16)0.071 (10)0.17 (3)
O7−0.0002 (3)0.2697 (5)0.00144 (17)0.0817 (11)
H7A0.055 (5)0.327 (6)0.0300 (19)0.123*
H7B0.059 (5)0.221 (6)−0.012 (2)0.123*
U11U22U33U12U13U23
Br10.0656 (4)0.0946 (5)0.0795 (4)0.0048 (3)0.0346 (3)−0.0224 (3)
O10.0426 (18)0.072 (2)0.063 (2)−0.0067 (16)0.0166 (16)−0.0216 (17)
O20.0376 (18)0.089 (2)0.078 (2)−0.0146 (18)0.0190 (17)−0.030 (2)
O30.0332 (17)0.078 (2)0.064 (2)−0.0127 (16)0.0128 (15)−0.0105 (17)
O40.0299 (16)0.070 (2)0.069 (2)−0.0099 (15)0.0168 (15)−0.0251 (16)
O50.0427 (17)0.058 (2)0.0527 (19)−0.0048 (15)0.0208 (15)−0.0106 (15)
N10.038 (2)0.045 (2)0.042 (2)−0.0051 (17)0.0047 (17)0.0042 (17)
N20.0273 (17)0.053 (2)0.045 (2)−0.0014 (16)0.0042 (16)−0.0033 (17)
C10.037 (2)0.042 (3)0.044 (3)0.002 (2)0.011 (2)0.003 (2)
C20.045 (3)0.042 (3)0.049 (3)0.002 (2)0.019 (2)0.000 (2)
C30.037 (2)0.049 (3)0.056 (3)−0.002 (2)0.015 (2)−0.006 (2)
C40.051 (3)0.048 (3)0.050 (3)−0.003 (2)0.013 (2)−0.008 (2)
C50.051 (3)0.050 (3)0.049 (3)0.002 (2)0.014 (2)0.000 (2)
C60.037 (2)0.058 (3)0.047 (3)0.001 (2)0.015 (2)0.005 (2)
C70.036 (2)0.052 (3)0.048 (3)−0.001 (2)0.009 (2)0.007 (2)
C80.034 (2)0.049 (3)0.041 (2)−0.003 (2)0.007 (2)0.010 (2)
C90.032 (2)0.041 (2)0.041 (2)−0.0017 (18)0.0101 (19)0.0039 (19)
C100.041 (2)0.039 (3)0.046 (3)0.0000 (19)0.017 (2)−0.003 (2)
C110.032 (2)0.038 (2)0.049 (3)−0.0019 (19)0.016 (2)−0.001 (2)
C120.037 (2)0.039 (2)0.038 (2)−0.0026 (19)0.011 (2)0.0047 (19)
C130.038 (2)0.056 (3)0.049 (3)−0.004 (2)0.019 (2)−0.004 (2)
C140.032 (2)0.055 (3)0.057 (3)−0.002 (2)0.018 (2)0.005 (2)
C150.049 (3)0.082 (4)0.092 (4)−0.018 (3)0.016 (3)−0.016 (3)
C160.040 (3)0.087 (4)0.084 (4)0.003 (3)0.031 (3)−0.023 (3)
O6A0.037 (3)0.081 (5)0.056 (3)−0.009 (2)0.010 (2)0.009 (3)
O6B0.062 (12)0.077 (14)0.074 (13)0.001 (8)0.025 (9)0.026 (8)
O70.048 (2)0.112 (3)0.083 (3)0.000 (2)0.0222 (18)−0.002 (2)
Br1—C51.895 (4)C8—C91.465 (5)
O1—C21.353 (5)C9—C101.389 (5)
O1—H10.82C9—C141.390 (5)
O2—C31.365 (5)C10—C111.367 (5)
O2—C151.396 (5)C10—H100.93
O3—C81.218 (5)C11—C121.400 (5)
O4—C111.361 (4)C12—C131.368 (5)
O4—C161.421 (5)C13—C141.368 (6)
O5—C121.353 (4)C13—H130.93
O5—H50.82C14—H140.93
N1—C71.286 (5)C15—H15A0.96
N1—N21.373 (4)C15—H15B0.96
N2—C81.357 (5)C15—H15C0.96
N2—H20.90C16—H16A0.96
C1—C21.382 (5)C16—H16B0.96
C1—C61.392 (5)C16—H16C0.96
C1—C71.448 (6)O6A—O6B0.83 (4)
C2—C31.388 (6)O6A—H6A0.851 (10)
C3—C41.367 (6)O6A—H6B0.853 (10)
C4—C51.381 (6)O6B—H6A0.856 (10)
C4—H40.93O6B—H6B0.858 (10)
C5—C61.358 (6)O7—H7A0.85 (5)
C6—H60.93O7—H7B0.85 (5)
C7—H70.93
C2—O1—H1109.5C11—C10—C9120.3 (4)
C3—O2—C15117.8 (4)C11—C10—H10119.8
C11—O4—C16119.3 (3)C9—C10—H10119.8
C12—O5—H5109.5O4—C11—C10124.8 (4)
C7—N1—N2119.0 (3)O4—C11—C12114.8 (3)
C8—N2—N1118.3 (3)C10—C11—C12120.3 (4)
C8—N2—H2123.6O5—C12—C13122.7 (4)
N1—N2—H2116.8O5—C12—C11117.4 (3)
C2—C1—C6120.3 (4)C13—C12—C11119.9 (4)
C2—C1—C7120.1 (4)C14—C13—C12119.3 (4)
C6—C1—C7119.6 (4)C14—C13—H13120.3
O1—C2—C1123.7 (4)C12—C13—H13120.3
O1—C2—C3117.2 (4)C13—C14—C9122.0 (4)
C1—C2—C3119.1 (4)C13—C14—H14119.0
O2—C3—C4125.1 (4)C9—C14—H14119.0
O2—C3—C2114.6 (4)O2—C15—H15A109.5
C4—C3—C2120.3 (4)O2—C15—H15B109.5
C3—C4—C5120.0 (4)H15A—C15—H15B109.5
C3—C4—H4120.0O2—C15—H15C109.5
C5—C4—H4120.0H15A—C15—H15C109.5
C6—C5—C4120.7 (4)H15B—C15—H15C109.5
C6—C5—Br1120.8 (3)O4—C16—H16A109.5
C4—C5—Br1118.5 (3)O4—C16—H16B109.5
C5—C6—C1119.5 (4)H16A—C16—H16B109.5
C5—C6—H6120.2O4—C16—H16C109.5
C1—C6—H6120.2H16A—C16—H16C109.5
N1—C7—C1120.3 (4)H16B—C16—H16C109.5
N1—C7—H7119.8O6B—O6A—H6A61.2 (18)
C1—C7—H7119.8O6B—O6A—H6B61.3 (17)
O3—C8—N2121.2 (4)H6A—O6A—H6B104 (2)
O3—C8—C9121.5 (4)O6A—O6B—H6A60.6 (18)
N2—C8—C9117.3 (4)O6A—O6B—H6B60.6 (18)
C10—C9—C14118.2 (4)H6A—O6B—H6B103 (2)
C10—C9—C8124.1 (4)H7A—O7—H7B109 (3)
C14—C9—C8117.7 (4)
C7—N1—N2—C8−178.8 (4)N1—N2—C8—O3−2.5 (6)
C6—C1—C2—O1−179.1 (4)N1—N2—C8—C9178.8 (3)
C7—C1—C2—O11.3 (6)O3—C8—C9—C10−178.6 (4)
C6—C1—C2—C32.0 (6)N2—C8—C9—C100.2 (6)
C7—C1—C2—C3−177.6 (4)O3—C8—C9—C140.5 (6)
C15—O2—C3—C411.5 (7)N2—C8—C9—C14179.2 (3)
C15—O2—C3—C2−169.8 (4)C14—C9—C10—C110.6 (6)
O1—C2—C3—O2−0.2 (6)C8—C9—C10—C11179.7 (4)
C1—C2—C3—O2178.8 (4)C16—O4—C11—C107.5 (6)
O1—C2—C3—C4178.6 (4)C16—O4—C11—C12−173.8 (4)
C1—C2—C3—C4−2.4 (6)C9—C10—C11—O4179.1 (4)
O2—C3—C4—C5179.8 (4)C9—C10—C11—C120.4 (6)
C2—C3—C4—C51.1 (7)O4—C11—C12—O51.3 (5)
C3—C4—C5—C60.7 (7)C10—C11—C12—O5−179.9 (3)
C3—C4—C5—Br1−179.1 (3)O4—C11—C12—C13179.8 (3)
C4—C5—C6—C1−1.1 (6)C10—C11—C12—C13−1.4 (6)
Br1—C5—C6—C1178.7 (3)O5—C12—C13—C14179.7 (4)
C2—C1—C6—C5−0.2 (6)C11—C12—C13—C141.2 (6)
C7—C1—C6—C5179.3 (4)C12—C13—C14—C9−0.2 (6)
N2—N1—C7—C1179.6 (3)C10—C9—C14—C13−0.8 (6)
C2—C1—C7—N11.6 (6)C8—C9—C14—C13−179.9 (4)
C6—C1—C7—N1−178.0 (4)
D—H···AD—HH···AD···AD—H···A
O7—H7B···O10.85 (5)2.34 (5)2.875 (4)122 (4)
O7—H7B···O20.85 (5)2.22 (5)3.027 (5)159 (5)
O7—H7A···O6A0.85 (5)2.06 (2)2.884 (10)163 (6)
O6A—H6B···O7i0.85 (1)1.91 (4)2.740 (8)163 (5)
O6A—H6A···O30.85 (1)1.92 (2)2.715 (6)154 (4)
N2—H2···O5ii0.902.143.028 (4)169
O5—H5···O6Biii0.821.852.64 (3)163
O5—H5···O6Aiii0.821.812.618 (5)166
O1—H1···N10.821.832.550 (4)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O7—H7B⋯O10.85 (5)2.34 (5)2.875 (4)122 (4)
O7—H7B⋯O20.85 (5)2.22 (5)3.027 (5)159 (5)
O7—H7A⋯O6A0.85 (5)2.06 (2)2.884 (10)163 (6)
O6A—H6B⋯O7i0.85 (1)1.91 (4)2.740 (8)163 (5)
O6A—H6A⋯O30.85 (1)1.92 (2)2.715 (6)154 (4)
N2—H2⋯O5ii0.902.143.028 (4)169
O5—H5⋯O6Biii0.821.852.64 (3)163
O5—H5⋯O6Aiii0.821.812.618 (5)166
O1—H1⋯N10.821.832.550 (4)145

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Chloro-N'-(2-hydroxy-benzyl-idene)benzohydrazide monohydrate.

Authors:  Jiu-Fu Lu; Suo-Tian Min; Xiao-Hui Ji; Zhong-Hai Dang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

3.  3,4,5-Trihydr-oxy-N'-(2-hydr-oxy-5-nitro-benzyl-idene)benzohydrazide mono-hydrate.

Authors:  Abeer A Abdul Alhadi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28

4.  (E)-4-Hydr-oxy-N'-(2-hydr-oxy-4-methoxy-benzyl-idene)benzohydrazide monohydrate.

Authors:  Nooraziah Mohd Lair; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20

5.  N'-(2-Hydroxy-benzyl-idene)-2-methoxy-benzohydrazide monohydrate.

Authors:  Jiu-Fu Lu; Suo-Tian Min; Xiao-Hui Ji; Zhong-Hai Dang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06

6.  2-Meth-oxy-N'-(2-methoxy-benzyl-idene)benzohydrazide.

Authors:  Jiu-Fu Lu; Suo-Tian Min; Xiao-Hui Ji; Zhong-Hai Dang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  6 in total

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