Literature DB >> 21577629

(4S,5S)-2-(3-Methoxy-phen-yl)-1,3-dioxolane-4,5-dicarboxamide.

De-Cai Wang, Tao Ge, Wen-Yuan Wu, Wei Xu, Zheng Yang.   

Abstract

In the title compound, C(12)H(14)N(2)O(5), the five-membered ring adopts an envelope conformation. In the crystal structure, inter-molecular N-H⋯O inter-actions link the mol-ecules into a three-dimensional network. A weak C-H⋯π inter-action is also found.

Entities:  

Year:  2009        PMID: 21577629      PMCID: PMC2970133          DOI: 10.1107/S1600536809032991

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Kim et al. (1994 ▶); Pandey et al. (1997 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C12H14N2O5 M = 266.25 Orthorhombic, a = 9.2340 (18) Å b = 9.852 (2) Å c = 14.266 (3) Å V = 1297.8 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 294 K 0.30 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.971, T max = 0.979 2599 measured reflections 1378 independent reflections 1157 reflections with I > 2σ(I) R int = 0.027 3 standard reflections frequency: 120 min intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.132 S = 1.33 1378 reflections 170 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809032991/hk2731sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809032991/hk2731Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14N2O5F(000) = 560
Mr = 266.25Dx = 1.363 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 9.2340 (18) Åθ = 9–13°
b = 9.852 (2) ŵ = 0.11 mm1
c = 14.266 (3) ÅT = 294 K
V = 1297.8 (5) Å3Block, colorless
Z = 40.30 × 0.20 × 0.20 mm
Enraf–Nonius CAD-4 diffractometer1157 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.027
graphiteθmax = 25.3°, θmin = 2.5°
ω/2θ scansh = −11→0
Absorption correction: ψ scan (North et al., 1968)k = −11→11
Tmin = 0.971, Tmax = 0.979l = −17→0
2599 measured reflections3 standard reflections every 120 min
1378 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.33w = 1/[σ2(Fo2) + (0.0632P)2 + 0.0799P] where P = (Fo2 + 2Fc2)/3
1378 reflections(Δ/σ)max < 0.001
170 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.6259 (4)0.9009 (4)−0.2515 (2)0.085 (2)
O20.5311 (3)0.7583 (2)0.08959 (15)0.0374 (6)
O30.7763 (3)0.7304 (2)0.10000 (19)0.0431 (6)
O40.6719 (5)0.3876 (3)0.0578 (3)0.0835 (13)
O50.5534 (3)0.5637 (2)0.30153 (17)0.0495 (7)
N10.8069 (4)0.5351 (3)−0.0253 (2)0.0600 (11)
H1A0.82240.4786−0.07010.072*
H1B0.84290.6155−0.02790.072*
N20.4593 (4)0.7713 (3)0.2737 (2)0.0461 (8)
H2A0.43890.78540.33170.055*
H2B0.43950.83220.23240.055*
C10.5709 (6)0.7727 (7)−0.2635 (3)0.093 (12)
H1C0.54410.7602−0.32800.140*
H1D0.48710.7613−0.22450.140*
H1E0.64290.7069−0.24660.140*
C20.6605 (5)0.9407 (5)−0.1622 (3)0.0582 (12)
C30.7152 (6)1.0709 (5)−0.1530 (3)0.0679 (15)
H3A0.72531.1252−0.20590.081*
C40.7541 (8)1.1201 (4)−0.0684 (4)0.0788 (18)
H4A0.79321.2068−0.06380.095*
C50.7366 (6)1.0431 (4)0.0109 (3)0.0581 (12)
H5A0.76141.07820.06920.070*
C60.6820 (4)0.9131 (3)0.0036 (2)0.0380 (8)
C70.6436 (4)0.8611 (4)−0.0833 (2)0.0444 (9)
H7A0.60690.7735−0.08830.053*
C80.6654 (4)0.8314 (3)0.0910 (2)0.0355 (8)
H8A0.66760.89180.14560.043*
C90.5521 (4)0.6389 (3)0.1436 (2)0.0334 (8)
H9A0.49040.56650.11860.040*
C100.7109 (4)0.6039 (3)0.1246 (3)0.0385 (8)
H10A0.75530.56950.18230.046*
C110.7276 (5)0.4985 (4)0.0474 (3)0.0469 (10)
C120.5210 (4)0.6565 (3)0.2480 (3)0.0349 (8)
U11U22U33U12U13U23
O10.076 (2)0.142 (3)0.0376 (13)−0.018 (2)−0.0052 (15)0.0087 (18)
O20.0403 (13)0.0370 (12)0.0349 (12)−0.0019 (11)−0.0030 (12)0.0073 (11)
O30.0365 (13)0.0359 (12)0.0569 (16)0.0001 (11)−0.0015 (12)0.0047 (12)
O40.128 (3)0.0379 (16)0.084 (2)−0.0130 (19)0.065 (2)−0.0087 (16)
O50.0698 (18)0.0423 (13)0.0363 (13)0.0070 (14)0.0056 (14)0.0088 (11)
N10.084 (3)0.0436 (18)0.053 (2)−0.0035 (19)0.038 (2)−0.0072 (16)
N20.0574 (19)0.0420 (16)0.0390 (17)0.0054 (17)0.0148 (15)0.0005 (13)
C10.065 (3)0.165 (7)0.049 (2)−0.063 (4)0.031 (2)−0.035 (4)
C20.047 (2)0.093 (3)0.0348 (19)0.010 (3)0.0024 (18)0.009 (2)
C30.091 (4)0.053 (3)0.060 (3)0.021 (3)0.029 (3)0.023 (2)
C40.136 (5)0.034 (2)0.066 (3)0.001 (3)0.046 (3)0.008 (2)
C50.088 (3)0.036 (2)0.050 (2)−0.003 (2)0.017 (2)−0.0037 (18)
C60.044 (2)0.0334 (17)0.0366 (18)0.0001 (15)0.0056 (16)0.0035 (15)
C70.043 (2)0.052 (2)0.0388 (19)−0.0026 (18)0.0046 (18)0.0007 (18)
C80.0388 (18)0.0318 (16)0.0360 (17)0.0027 (14)−0.0012 (17)0.0020 (15)
C90.0400 (19)0.0285 (16)0.0318 (17)−0.0028 (15)−0.0019 (16)0.0024 (13)
C100.044 (2)0.0333 (17)0.0381 (18)0.0026 (16)0.0075 (16)0.0042 (15)
C110.059 (3)0.0342 (18)0.048 (2)0.0034 (18)0.023 (2)0.0064 (16)
C120.0405 (19)0.0309 (16)0.0332 (15)−0.0022 (15)0.0019 (16)−0.0011 (15)
O1—C11.372 (7)C2—C71.380 (5)
O1—C21.371 (5)C2—C31.385 (7)
O2—C81.434 (4)C3—C41.350 (8)
O2—C91.419 (4)C3—H3A0.9300
O3—C81.434 (4)C4—C51.371 (6)
O3—C101.429 (4)C4—H4A0.9300
O4—C111.217 (5)C5—C61.380 (5)
O5—C121.228 (4)C5—H5A0.9300
N1—C111.320 (5)C6—C71.387 (5)
N1—H1A0.8600C6—C81.492 (5)
N1—H1B0.8600C7—H7A0.9300
N2—C121.318 (4)C8—H8A0.9800
N2—H2A0.8600C9—C121.527 (5)
N2—H2B0.8600C9—C101.531 (5)
C1—H1C0.9600C9—H9A0.9800
C1—H1D0.9600C10—C111.521 (5)
C1—H1E0.9600C10—H10A0.9800
C2—O1—C1117.8 (4)C7—C6—C8121.4 (3)
C9—O2—C8106.9 (2)C2—C7—C6119.3 (4)
C10—O3—C8109.0 (3)C2—C7—H7A120.3
C11—N1—H1A120.0C6—C7—H7A120.3
C11—N1—H1B120.0O2—C8—O3105.6 (2)
H1A—N1—H1B120.0O2—C8—C6110.4 (3)
C12—N2—H2A120.0O3—C8—C6112.1 (3)
C12—N2—H2B120.0O2—C8—H8A109.6
H2A—N2—H2B120.0O3—C8—H8A109.6
O1—C1—H1C109.5C6—C8—H8A109.6
O1—C1—H1D109.5O2—C9—C12114.2 (3)
H1C—C1—H1D109.5O2—C9—C10102.8 (3)
O1—C1—H1E109.5C12—C9—C10112.2 (3)
H1C—C1—H1E109.5O2—C9—H9A109.1
H1D—C1—H1E109.5C12—C9—H9A109.1
O1—C2—C7124.7 (5)C10—C9—H9A109.1
O1—C2—C3115.9 (4)O3—C10—C11112.0 (3)
C7—C2—C3119.4 (4)O3—C10—C9104.6 (3)
C4—C3—C2120.9 (4)C11—C10—C9112.3 (3)
C4—C3—H3A119.5O3—C10—H10A109.3
C2—C3—H3A119.5C11—C10—H10A109.3
C3—C4—C5120.5 (4)C9—C10—H10A109.3
C3—C4—H4A119.7O4—C11—N1125.1 (4)
C5—C4—H4A119.7O4—C11—C10118.8 (3)
C4—C5—C6119.6 (4)N1—C11—C10116.0 (3)
C4—C5—H5A120.2O5—C12—N2124.9 (3)
C6—C5—H5A120.2O5—C12—C9118.4 (3)
C5—C6—C7120.2 (3)N2—C12—C9116.7 (3)
C5—C6—C8118.4 (3)
C1—O1—C2—C7−0.1 (7)C5—C6—C8—O3−104.0 (4)
C1—O1—C2—C3−179.8 (5)C7—C6—C8—O376.1 (4)
O1—C2—C3—C4−179.3 (5)C8—O2—C9—C1288.2 (3)
C7—C2—C3—C41.0 (8)C8—O2—C9—C10−33.7 (3)
C2—C3—C4—C5−1.7 (9)C8—O3—C10—C11114.2 (3)
C3—C4—C5—C61.6 (8)C8—O3—C10—C9−7.6 (4)
C4—C5—C6—C7−0.7 (7)O2—C9—C10—O325.2 (3)
C4—C5—C6—C8179.5 (5)C12—C9—C10—O3−98.0 (3)
O1—C2—C7—C6−179.7 (4)O2—C9—C10—C11−96.5 (3)
C3—C2—C7—C6−0.1 (6)C12—C9—C10—C11140.3 (3)
C5—C6—C7—C2−0.1 (6)O3—C10—C11—O4−177.2 (4)
C8—C6—C7—C2179.8 (4)C9—C10—C11—O4−59.9 (5)
C9—O2—C8—O329.8 (3)O3—C10—C11—N14.8 (5)
C9—O2—C8—C6151.1 (3)C9—C10—C11—N1122.1 (4)
C10—O3—C8—O2−12.7 (3)O2—C9—C12—O5−171.1 (3)
C10—O3—C8—C6−132.9 (3)C10—C9—C12—O5−54.6 (4)
C5—C6—C8—O2138.5 (4)O2—C9—C12—N29.5 (5)
C7—C6—C8—O2−41.3 (4)C10—C9—C12—N2126.1 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2B···O5i0.862.333.076 (4)145
N2—H2A···O4i0.862.132.926 (4)153
N1—H1B···O2ii0.862.313.045 (4)143
N1—H1A···O5iii0.862.202.952 (4)146
C9—H9A···Cg1iv0.982.823.640 (4)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O5i0.862.333.076 (4)145
N2—H2A⋯O4i0.862.132.926 (4)153
N1—H1B⋯O2ii0.862.313.045 (4)143
N1—H1A⋯O5iii0.862.202.952 (4)146
C9—H9ACg1iv0.982.823.640 (4)141

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of the C2–C7 ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antitumor activity of a series of [2-substituted-4,5-bis(aminomethyl)-1,3-dioxolane]platinum(II) complexes.

Authors:  D K Kim; G Kim; J Gam; Y B Cho; H T Kim; J H Tai; K H Kim; W S Hong; J G Park
Journal:  J Med Chem       Date:  1994-05-13       Impact factor: 7.446

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.