Literature DB >> 21577567

1-[(4S)-4-Benzyl-2-thioxo-1,3-thia-zol-idin-3-yl]propan-1-one.

Narendar Reddy Gade, Y Manjula, Javed Iqbal, Peddy Vishweshwar.   

Abstract

The analysis of the title chiral auxiliary compound, C(13)H(15)NOS(2), has enabled the determination of the absolute configuration at the benzyl-bearing ring C atom as S. In the crystal structure, mol-ecules aggregate into helical chains along the b axis via C-H⋯O contacts.

Entities:  

Year:  2009        PMID: 21577567      PMCID: PMC2970139          DOI: 10.1107/S1600536809030104

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the use of N-acyl thia­zolidinethio­nes as versatile chiral auxiliaries for asymmetric aldol reactions, see: Crimmins & Chaudhary (2000 ▶); Crimmins et al. (2005 ▶); Crimmins & Haley (2006 ▶); Crimmins & Dechert (2009 ▶). For the synthesis, see: McKennon & Meyer (1993 ▶); Delaunay et al. (1995 ▶); Lu et al. (2009 ▶).

Experimental

Crystal data

C13H15NOS2 M = 265.39 Monoclinic, a = 8.850 (6) Å b = 7.189 (5) Å c = 10.595 (7) Å β = 95.537 (6)° V = 670.9 (8) Å3 Z = 2 Mo Kα radiation μ = 0.38 mm−1 T = 298 K 0.50 × 0.40 × 0.20 mm

Data collection

Rigaku Mercury diffractometer Absorption correction: multi-scan (Jacobson, 1998 ▶) T min = 0.831, T max = 0.925 7301 measured reflections 2734 independent reflections 2361 reflections with F 2 > 2σ(F 2) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.048 S = 0.86 2734 reflections 170 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.35 e Å−3 Absolute structure: Flack (1983 ▶), 1138 Friedel pairs Flack parameter: −0.05 (6) Data collection: CrystalClear (Pflugrath, 1999 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Molecular Structure Corporation & Rigaku, 2006 ▶); program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: X-SEED (Barbour et al., 2001 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809030104/tk2514sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030104/tk2514Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H15NOS2F(000) = 280
Mr = 265.39Dx = 1.314 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71070 Å
Hall symbol: P 2ybCell parameters from 3674 reflections
a = 8.850 (6) Åθ = 2.3–27.4°
b = 7.189 (5) ŵ = 0.38 mm1
c = 10.595 (7) ÅT = 298 K
β = 95.537 (6)°Prism, yellow
V = 670.9 (8) Å30.50 × 0.40 × 0.20 mm
Z = 2
Rigaku Mercury diffractometer2361 reflections with F2 > 2σ(F2)
Detector resolution: 7.31 pixels mm-1Rint = 0.038
ω scansθmax = 27.4°
Absorption correction: multi-scan (Jacobson, 1998)h = −11→11
Tmin = 0.831, Tmax = 0.925k = −6→9
7301 measured reflectionsl = −13→13
2734 independent reflections
Refinement on F2 Chebychev polynomial with 3 parameters (Carruthers & Watkin, 1979) 10359.0000 14093.9000 3595.6900
R[F2 > 2σ(F2)] = 0.041(Δ/σ)max < 0.001
wR(F2) = 0.048Δρmax = 0.32 e Å3
S = 0.86Δρmin = −0.35 e Å3
2734 reflectionsAbsolute structure: Flack (1983), 1138 Friedel pairs
170 parametersFlack parameter: −0.05 (6)
H-atom parameters constrained
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
S10.55104 (6)1.08609 (10)0.94969 (5)0.0574 (2)
S20.80540 (7)1.31770 (10)1.04864 (6)0.0630 (2)
O10.96079 (17)1.0605 (2)0.69074 (15)0.0720 (6)
N10.79082 (15)1.1039 (2)0.83154 (13)0.0410 (4)
C10.6994 (2)0.9543 (2)0.76431 (19)0.0436 (6)
C20.5366 (2)0.9806 (2)0.79429 (19)0.0498 (7)
C30.7324 (2)1.1748 (2)0.93706 (19)0.0462 (6)
C40.7616 (2)0.7610 (2)0.80159 (19)0.0469 (6)
C50.7183 (2)0.6180 (2)0.70140 (17)0.0441 (6)
C60.5872 (2)0.5119 (2)0.7014 (2)0.0561 (7)
C70.5469 (3)0.3871 (3)0.6051 (2)0.0673 (9)
C80.6379 (3)0.3610 (3)0.5087 (2)0.0704 (9)
C90.7667 (3)0.4651 (3)0.5063 (2)0.0719 (9)
C100.8074 (2)0.5935 (3)0.60097 (19)0.0569 (7)
C110.9289 (2)1.1496 (2)0.7801 (2)0.0501 (7)
C121.0320 (2)1.3001 (3)0.8384 (2)0.0545 (7)
C131.1629 (2)1.3369 (4)0.7610 (2)0.0861 (10)
H10.703300.969700.675600.0520*
H60.524300.526000.768600.0670*
H70.455700.317500.605300.0790*
H80.610000.272600.444000.0830*
H90.830300.446000.440200.0870*
H100.895400.668100.596800.0690*
H210.483801.060700.733900.0600*
H220.485500.864400.794800.0590*
H410.721300.723500.877500.0550*
H420.869100.767500.815700.0560*
H1211.070801.262100.921100.0650*
H1220.974801.411100.843800.0650*
H1311.193001.463400.770500.1050*
H1321.245801.258600.789300.1050*
H1331.132301.312000.674300.1050*
U11U22U33U12U13U23
S10.0512 (2)0.0621 (3)0.0611 (3)−0.0066 (3)0.0167 (2)−0.0116 (3)
S20.0587 (3)0.0640 (4)0.0664 (3)−0.0025 (3)0.0059 (2)−0.0247 (3)
O10.0664 (9)0.0751 (11)0.0796 (10)−0.0150 (9)0.0330 (8)−0.0265 (10)
N10.0401 (7)0.0364 (8)0.0470 (8)−0.0001 (7)0.0062 (6)−0.0019 (7)
C10.0419 (10)0.0430 (11)0.0458 (10)−0.0008 (8)0.0035 (8)0.0002 (8)
C20.0417 (10)0.0508 (13)0.0561 (12)−0.0027 (9)0.0011 (8)−0.0019 (9)
C30.0427 (10)0.0438 (11)0.0513 (11)0.0037 (8)0.0008 (8)−0.0042 (9)
C40.0510 (11)0.0393 (11)0.0487 (11)0.0028 (8)−0.0031 (8)−0.0011 (8)
C50.0453 (10)0.0389 (12)0.0467 (10)0.0008 (8)−0.0027 (8)0.0025 (8)
C60.0647 (13)0.0460 (13)0.0569 (12)−0.0083 (10)0.0017 (10)0.0087 (9)
C70.0828 (17)0.0465 (14)0.0678 (15)−0.0207 (11)−0.0179 (13)0.0093 (11)
C80.104 (2)0.0511 (15)0.0517 (13)−0.0052 (13)−0.0146 (13)−0.0034 (11)
C90.0992 (19)0.0603 (15)0.0580 (14)0.0079 (15)0.0176 (13)−0.0055 (12)
C100.0579 (11)0.0527 (12)0.0617 (12)0.0015 (12)0.0134 (9)−0.0026 (12)
C110.0415 (11)0.0480 (13)0.0617 (12)0.0026 (8)0.0095 (9)−0.0011 (9)
C120.0430 (10)0.0488 (12)0.0711 (13)−0.0016 (10)0.0032 (9)−0.0073 (11)
C130.0543 (13)0.086 (2)0.121 (2)−0.0223 (15)0.0242 (13)−0.0216 (19)
S1—C21.806 (2)C12—C131.506 (3)
S1—C31.744 (2)C1—H10.9500
S2—C31.650 (2)C2—H210.9500
O1—C111.199 (3)C2—H220.9500
N1—C11.486 (2)C4—H410.9500
N1—C31.374 (3)C4—H420.9500
N1—C111.424 (2)C6—H60.9500
C1—C21.517 (3)C7—H70.9500
C1—C41.532 (2)C8—H80.9500
C4—C51.501 (3)C9—H90.9500
C5—C61.389 (3)C10—H100.9500
C5—C101.395 (3)C12—H1210.9500
C6—C71.380 (3)C12—H1220.9500
C7—C81.373 (3)C13—H1310.9500
C8—C91.366 (4)C13—H1320.9500
C9—C101.385 (3)C13—H1330.9500
C11—C121.509 (3)
C2—S1—C393.92 (9)C1—C2—H21110.00
C1—N1—C3115.36 (14)C1—C2—H22111.00
C1—N1—C11115.55 (14)H21—C2—H22109.00
C3—N1—C11129.05 (14)C1—C4—H41109.00
N1—C1—C2107.08 (13)C1—C4—H42109.00
N1—C1—C4111.56 (15)C5—C4—H41108.00
C2—C1—C4112.58 (14)C5—C4—H42109.00
S1—C2—C1104.96 (13)H41—C4—H42109.00
S1—C3—S2118.18 (11)C5—C6—H6119.00
S1—C3—N1110.37 (12)C7—C6—H6120.00
S2—C3—N1131.43 (14)C6—C7—H7120.00
C1—C4—C5112.21 (15)C8—C7—H7119.00
C4—C5—C6122.19 (16)C7—C8—H8120.00
C4—C5—C10120.09 (16)C9—C8—H8121.00
C6—C5—C10117.67 (16)C8—C9—H9119.00
C5—C6—C7120.91 (19)C10—C9—H9120.00
C6—C7—C8120.7 (2)C5—C10—H10119.00
C7—C8—C9119.3 (2)C9—C10—H10120.00
C8—C9—C10120.7 (2)C11—C12—H121109.00
C5—C10—C9120.65 (18)C11—C12—H122109.00
O1—C11—N1117.07 (15)C13—C12—H121109.00
O1—C11—C12121.82 (17)C13—C12—H122109.00
N1—C11—C12121.09 (16)H121—C12—H122109.00
C11—C12—C13111.70 (18)C12—C13—H131109.00
N1—C1—H1109.00C12—C13—H132110.00
C2—C1—H1109.00C12—C13—H133109.00
C4—C1—H1108.00H131—C13—H132109.00
S1—C2—H21110.00H131—C13—H133110.00
S1—C2—H22111.00H132—C13—H133109.00
C3—S1—C2—C122.91 (12)C4—C1—C2—S193.51 (15)
C2—S1—C3—S2171.92 (11)N1—C1—C4—C5−155.93 (15)
C2—S1—C3—N1−9.64 (13)C2—C1—C4—C583.7 (2)
C3—N1—C1—C225.15 (19)C1—C4—C5—C6−91.3 (2)
C3—N1—C1—C4−98.44 (17)C1—C4—C5—C1086.0 (2)
C11—N1—C1—C2−156.77 (15)C4—C5—C6—C7177.20 (17)
C11—N1—C1—C479.65 (19)C10—C5—C6—C7−0.1 (3)
C1—N1—C3—S1−7.69 (18)C4—C5—C10—C9−178.46 (18)
C1—N1—C3—S2170.47 (14)C6—C5—C10—C9−1.1 (3)
C11—N1—C3—S1174.53 (14)C5—C6—C7—C81.9 (3)
C11—N1—C3—S2−7.3 (3)C6—C7—C8—C9−2.4 (3)
C1—N1—C11—O1−2.2 (2)C7—C8—C9—C101.2 (3)
C1—N1—C11—C12179.47 (16)C8—C9—C10—C50.6 (3)
C3—N1—C11—O1175.56 (17)O1—C11—C12—C137.3 (3)
C3—N1—C11—C12−2.8 (3)N1—C11—C12—C13−174.42 (17)
N1—C1—C2—S1−29.44 (15)
D—H···AD—HH···AD···AD—H···A
C9—H9···O1i0.952.553.408 (4)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯O1i0.952.553.408 (4)150

Symmetry code: (i) .

  5 in total

1.  The finer things in X-ray diffraction data collection.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

2.  Enantioselective synthesis of apoptolidinone: exploiting the versatility of thiazolidinethione chiral auxiliaries.

Authors:  Michael T Crimmins; Hamish S Christie; Kleem Chaudhary; Alan Long
Journal:  J Am Chem Soc       Date:  2005-10-12       Impact factor: 15.419

3.  Synthesis of the C29-C37 bicyclic ether core of (+)-sorangicin A.

Authors:  Michael T Crimmins; Matthew W Haley
Journal:  Org Lett       Date:  2006-09-14       Impact factor: 6.005

4.  Titanium enolates of thiazolidinethione chiral auxiliaries: versatile tools for asymmetric aldol additions.

Authors:  M T Crimmins; K Chaudhary
Journal:  Org Lett       Date:  2000-03-23       Impact factor: 6.005

5.  Enantioselective total synthesis of (-)-pironetin: iterative aldol reactions of thiazolidinethiones.

Authors:  Michael T Crimmins; Anne-Marie R Dechert
Journal:  Org Lett       Date:  2009-04-02       Impact factor: 6.005

  5 in total

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