Literature DB >> 21577551

1,3-Bis[(4-nitro-benzyl-idene)amino-oxy]propane.

Wen-Kui Dong1, Yin-Xia Sun, Jun-Feng Tong, Hai-Hong Zhao, Li Wang.   

Abstract

The complete molecule of title compound, C(17)H(16)N(4)O(6), is generated by a crystallographic twofold axis. Within the mol-ecule, the two benzene units are approximately perpen-dicular, making a dihedral angle of 85.91 (4)°. In the crystal, mol-ecules are linked into a three-dimensional network by C-H⋯O hydrogen bonds and short O⋯O and N⋯O inter-actions, with distances of 2.998 (2) and 2.968 (3) Å, respectively.

Entities:  

Year:  2009        PMID: 21577551      PMCID: PMC2969883          DOI: 10.1107/S1600536809031316

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to Schiff base complexes and their applications, see: Niederhoffer et al. (1984 ▶); Zhang et al. (1990 ▶); Tisato et al. (1994 ▶); Lacroix (2001 ▶); Sundari et al. (1997 ▶); Koehler et al. (1964 ▶); Cordes & Jencks (1962 ▶); Akine et al. (2006 ▶). For related structures, see: Fun et al. (2008a ▶,b ▶); Kia et al. (2009 ▶); Shi et al. (2007 ▶); Ren et al. (2008 ▶); Ding et al. (2009 ▶); Dong et al. (2008a ▶). For a related Schiff base bis­oxime compound synthesized using a similar route, see: Dong et al. (2008b ▶).

Experimental

Crystal data

C17H16N4O6 M = 372.34 Monoclinic, a = 29.005 (3) Å b = 4.7878 (5) Å c = 6.3579 (7) Å β = 99.144 (1)° V = 871.71 (16) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.45 × 0.17 × 0.06 mm

Data collection

Siemens SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.952, T max = 0.993 2321 measured reflections 872 independent reflections 675 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.094 S = 0.96 872 reflections 123 parameters 1 restraint H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809031316/fl2256sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031316/fl2256Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H16N4O6F(000) = 388
Mr = 372.34Dx = 1.419 Mg m3
Monoclinic, C2Melting point = 427–429 K
Hall symbol: C 2yMo Kα radiation, λ = 0.71073 Å
a = 29.005 (3) ÅCell parameters from 773 reflections
b = 4.7878 (5) Åθ = 2.9–25.3°
c = 6.3579 (7) ŵ = 0.11 mm1
β = 99.144 (1)°T = 298 K
V = 871.71 (16) Å3Needle-like, colorless
Z = 20.45 × 0.17 × 0.06 mm
Siemens SMART 1000 CCD area-detector diffractometer872 independent reflections
Radiation source: fine-focus sealed tube675 reflections with I > 2σ(I)
graphiteRint = 0.049
φ and ω scansθmax = 25.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→34
Tmin = 0.952, Tmax = 0.993k = −5→5
2321 measured reflectionsl = −7→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 0.96w = 1/[σ2(Fo2) + (0.0524P)2] where P = (Fo2 + 2Fc2)/3
872 reflections(Δ/σ)max < 0.001
123 parametersΔρmax = 0.13 e Å3
1 restraintΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.93031 (9)0.2933 (7)0.6567 (4)0.0497 (7)
N20.79744 (9)1.2194 (6)0.1169 (4)0.0479 (7)
O10.94454 (7)0.1141 (6)0.8289 (3)0.0560 (7)
O20.76377 (8)1.3375 (6)0.1705 (3)0.0643 (7)
O30.81103 (8)1.2669 (6)−0.0530 (3)0.0656 (8)
C10.98599 (10)−0.0342 (8)0.8012 (4)0.0508 (9)
H1A1.01060.09560.78150.061*
H1B0.9799−0.15510.67750.061*
C21.0000−0.2040 (12)1.00000.0511 (12)
H2A0.9741−0.32361.02030.061*0.50
H2B1.0259−0.32360.97970.061*0.50
C30.89337 (11)0.4213 (8)0.6853 (5)0.0486 (9)
H30.88090.38400.80820.058*
C40.86975 (10)0.6240 (8)0.5337 (4)0.0418 (8)
C50.88617 (10)0.6955 (7)0.3454 (4)0.0501 (9)
H50.91300.61150.31200.060*
C60.86237 (10)0.8918 (7)0.2086 (5)0.0481 (9)
H60.87330.94220.08410.058*
C70.82254 (10)1.0105 (7)0.2594 (4)0.0405 (7)
C80.80565 (10)0.9443 (8)0.4438 (4)0.0470 (9)
H80.77871.02800.47560.056*
C90.82958 (10)0.7517 (8)0.5798 (4)0.0473 (8)
H90.81860.70610.70530.057*
U11U22U33U12U13U23
N10.0561 (17)0.0467 (17)0.0439 (14)−0.0031 (16)0.0009 (12)0.0075 (15)
N20.0530 (16)0.0421 (18)0.0486 (14)−0.0031 (15)0.0076 (13)0.0048 (14)
O10.0543 (14)0.0622 (16)0.0514 (12)0.0090 (13)0.0083 (10)0.0130 (13)
O20.0691 (15)0.0610 (18)0.0650 (14)0.0177 (15)0.0178 (12)0.0114 (14)
O30.0766 (15)0.0688 (19)0.0547 (12)0.0025 (15)0.0208 (11)0.0196 (15)
C10.0476 (17)0.047 (2)0.0561 (19)−0.0001 (18)0.0044 (15)−0.0014 (17)
C20.049 (3)0.044 (3)0.057 (3)0.000−0.001 (2)0.000
C30.0467 (17)0.051 (2)0.0488 (18)−0.002 (2)0.0108 (15)0.0082 (18)
C40.0441 (17)0.0393 (19)0.0408 (15)−0.0048 (16)0.0034 (14)0.0022 (16)
C50.0471 (18)0.056 (3)0.0495 (17)0.0035 (19)0.0136 (15)0.0007 (18)
C60.0535 (19)0.052 (2)0.0405 (16)−0.0020 (19)0.0125 (14)0.0062 (16)
C70.0457 (16)0.0351 (18)0.0395 (15)−0.0039 (15)0.0032 (13)0.0016 (14)
C80.0469 (18)0.048 (2)0.0486 (18)0.0014 (18)0.0165 (15)0.0034 (17)
C90.0480 (17)0.051 (2)0.0448 (16)0.0022 (18)0.0139 (13)0.0090 (17)
N1—C31.273 (4)C3—C41.459 (4)
N1—O11.401 (3)C3—H30.9300
N2—O21.223 (3)C4—C91.388 (4)
N2—O31.229 (3)C4—C51.399 (4)
N2—C71.464 (4)C5—C61.387 (4)
O1—C11.431 (3)C5—H50.9300
C1—C21.503 (5)C6—C71.371 (4)
C1—H1A0.9700C6—H60.9300
C1—H1B0.9700C7—C81.378 (4)
C2—C1i1.503 (5)C8—C91.374 (5)
C2—H2A0.9700C8—H80.9300
C2—H2B0.9700C9—H90.9300
C3—N1—O1109.5 (2)C4—C3—H3118.5
O2—N2—O3122.8 (3)C9—C4—C5119.0 (3)
O2—N2—C7119.0 (2)C9—C4—C3118.4 (3)
O3—N2—C7118.2 (3)C5—C4—C3122.7 (3)
N1—O1—C1110.9 (2)C6—C5—C4119.9 (3)
O1—C1—C2106.5 (2)C6—C5—H5120.0
O1—C1—H1A110.4C4—C5—H5120.0
C2—C1—H1A110.4C7—C6—C5119.2 (3)
O1—C1—H1B110.4C7—C6—H6120.4
C2—C1—H1B110.4C5—C6—H6120.4
H1A—C1—H1B108.6C6—C7—C8122.1 (3)
C1i—C2—C1114.5 (5)C6—C7—N2119.5 (3)
C1i—C2—H2A108.6C8—C7—N2118.4 (3)
C1—C2—H2A108.6C9—C8—C7118.5 (3)
C1i—C2—H2B108.6C9—C8—H8120.7
C1—C2—H2B108.6C7—C8—H8120.7
H2A—C2—H2B107.6C8—C9—C4121.3 (3)
N1—C3—C4122.9 (3)C8—C9—H9119.3
N1—C3—H3118.5C4—C9—H9119.3
C3—N1—O1—C1179.8 (3)C5—C6—C7—N2179.5 (3)
N1—O1—C1—C2176.2 (3)O2—N2—C7—C6−175.2 (3)
O1—C1—C2—C1i−64.9 (2)O3—N2—C7—C65.4 (4)
O1—N1—C3—C4179.9 (3)O2—N2—C7—C83.4 (4)
N1—C3—C4—C9179.9 (3)O3—N2—C7—C8−176.0 (3)
N1—C3—C4—C5−0.6 (5)C6—C7—C8—C9−0.3 (5)
C9—C4—C5—C60.1 (5)N2—C7—C8—C9−178.9 (3)
C3—C4—C5—C6−179.4 (3)C7—C8—C9—C4−0.4 (5)
C4—C5—C6—C7−0.9 (5)C5—C4—C9—C80.5 (5)
C5—C6—C7—C81.0 (5)C3—C4—C9—C8−179.9 (3)
D—H···AD—HH···AD···AD—H···A
C3—H3···O3ii0.932.403.206 (4)145
C9—H9···O3ii0.932.633.395 (4)139
C9—H9···O2iii0.932.713.374 (4)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O3i0.932.403.206 (4)145
C9—H9⋯O3i0.932.633.395 (4)139
C9—H9⋯O2ii0.932.713.374 (4)129

Symmetry codes: (i) ; (ii) .

  9 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Octanuclear zinc(II) and cobalt(II) clusters produced by cooperative tetrameric assembling of oxime chelate ligands.

Authors:  Shigehisa Akine; Wenkui Dong; Tatsuya Nabeshima
Journal:  Inorg Chem       Date:  2006-06-12       Impact factor: 5.165

3.  1,1'-[(Hexane-1,6-diyldi-oxy)bis-(nitrilo-methyl-idyne)]dinaphthalene.

Authors:  Wen-Kui Dong; Xue-Ni He; Li Li; Zhong-Wu Lv; Jun-Feng Tong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05

4.  3,3'-Dibromo-1,1'-[ethyl-enedioxy-bis(nitrilo-methyl-idyne)]dibenzene.

Authors:  Wen-Kui Dong; Yu-Jie Ding; Ya-Ling Luo; Hai-Bo Yan; Li Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

5.  4,4'-Dimethyl-1,1'-[ethyl-enedioxy-bis(nitrilo-methyl-idyne)]dibenzene.

Authors:  Yu-Jie Ding; Zhu-Lian Xue; Wen-Kui Dong; Yin-Xia Sun; Jian-Chao Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-07

6.  4,4'-[Ethylenebis(nitrilomethylidyne)]dibenzonitrile.

Authors:  Reza Kia; Hoong-Kun Fun; Hadi Kargar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-06

7.  N,N'-Bis(4-bromo-benzyl-idene)ethane-1,2-diamine.

Authors:  Hoong-Kun Fun; Valiollah Mirkhani; Reza Kia; Akbar Rostami Vartooni
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-05

8.  N,N'-Bis(3-bromo-benzyl-idene)ethane-1,2-diamine.

Authors:  Hoong-Kun Fun; Valiollah Mirkhani; Reza Kia; Akbar Rostami Vartooni
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12

9.  2,2'-Dichloro-1,1'-[(butane-1,4-diyldi-oxy)bis-(nitrilo-methyl-idyne)]dibenzene.

Authors:  Zong-Li Ren; Wen-Kui Dong; Wen-Juan Bai; Xue-Ni He; Li Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.