Literature DB >> 21577546

1-Cyclo-hexyl-2-(3-fur-yl)-1H-benzimidazole-5-carboxylic acid.

Sergey Dibrov1, Sanjay Dutta, Thomas Hermann.   

Abstract

The asymmetric unit of the title compound, C(18)H(18)N(2)O(3), contains two mol-ecules. The fused rings of both mol-ecules are almost planar, with dihedral angles of 3.1 (1) and 2.8 (2)° between the fused rings. The furan rings are rotated by 43.85 (15) and -21.07 (9)° with respect to the planes of the attached bnzimidazole systems. In the crystal, mol-ecules are linked into infinite chains by inter-molecular O-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21577546      PMCID: PMC2970106          DOI: 10.1107/S1600536809031213

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see Beaulieu et al. (2004a ▶). For the synthesis, see Beaulieu et al. (2004b ▶).

Experimental

Crystal data

C18H18N2O3 M = 310.34 Monoclinic, a = 9.1402 (3) Å b = 11.2446 (3) Å c = 15.6061 (5) Å β = 101.334 (2)° V = 1572.68 (8) Å3 Z = 4 Cu Kα radiation μ = 0.74 mm−1 T = 100 K 0.50 × 0.50 × 0.45 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.710, T max = 0.733 7859 measured reflections 4379 independent reflections 4006 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.143 S = 1.06 4379 reflections 423 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.73 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809031213/rk2157sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031213/rk2157Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H18N2O3F(000) = 656
Mr = 310.34Dx = 1.311 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ybCell parameters from 5005 reflections
a = 9.1402 (3) Åθ = 2.9–65.6°
b = 11.2446 (3) ŵ = 0.74 mm1
c = 15.6061 (5) ÅT = 100 K
β = 101.334 (2)°Block, colourless
V = 1572.68 (8) Å30.50 × 0.50 × 0.45 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer4379 independent reflections
Radiation source: fine-focus sealed tube4006 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 66.4°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.710, Tmax = 0.733k = −13→12
7859 measured reflectionsl = −18→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0919P)2 + 0.4805P] where P = (Fo2 + 2Fc2)/3
4379 reflections(Δ/σ)max = 0.007
423 parametersΔρmax = 0.73 e Å3
1 restraintΔρmin = −0.29 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.5638 (3)0.67629 (19)0.56838 (16)0.0384 (6)
O20.5668 (3)0.5223 (2)0.47898 (14)0.0335 (5)
H20.574 (5)0.581 (4)0.432 (3)0.059 (13)*
O30.3079 (3)−0.1746 (2)0.74288 (17)0.0496 (7)
N10.4370 (3)0.2274 (3)0.79176 (17)0.0330 (6)
N20.4291 (3)0.1685 (2)0.65399 (17)0.0283 (6)
C10.5558 (3)0.5707 (3)0.5547 (2)0.0292 (7)
C20.5294 (4)0.4824 (3)0.6213 (2)0.0277 (7)
C30.5382 (4)0.5195 (3)0.7078 (2)0.0345 (8)
H30.56280.60000.72240.041*
C40.5126 (4)0.4436 (3)0.7724 (2)0.0358 (8)
H4B0.51860.46960.83090.043*
C50.4767 (4)0.3249 (3)0.7470 (2)0.0297 (7)
C60.4321 (5)0.2198 (4)0.8860 (2)0.0465 (9)
H60.40300.13560.89460.056*
C70.3093 (4)0.2922 (4)0.9103 (2)0.0448 (9)
H7A0.21320.26870.87280.054*
H7B0.32650.37730.89910.054*
C80.2991 (6)0.2766 (6)1.0046 (3)0.0717 (15)
H8A0.23190.33851.02030.086*
H8B0.25340.19831.01160.086*
C90.4430 (6)0.2838 (8)1.0658 (3)0.093 (2)
H9A0.42900.26131.12500.111*
H9B0.47930.36691.06840.111*
C100.4080 (4)0.1373 (3)0.7332 (2)0.0310 (7)
C110.4698 (3)0.2865 (3)0.6616 (2)0.0267 (7)
C120.4959 (3)0.3654 (3)0.5968 (2)0.0267 (7)
H120.49090.33980.53830.032*
C130.3512 (4)0.0199 (3)0.7503 (2)0.0359 (8)
C140.3900 (5)−0.0844 (3)0.7186 (3)0.0432 (9)
H140.4641−0.09350.68420.052*
C150.2130 (5)−0.1246 (4)0.7902 (3)0.0476 (10)
H150.1418−0.16750.81490.057*
C160.2339 (4)−0.0080 (3)0.7971 (2)0.0396 (9)
H160.18200.04640.82690.047*
C170.5769 (5)0.2333 (5)0.9441 (3)0.0608 (12)
H17A0.61210.31640.94210.073*
H17B0.65090.18030.92510.073*
C180.5620 (5)0.2013 (6)1.0386 (3)0.0738 (17)
H18A0.65910.21211.07900.089*
H18B0.53150.11721.04130.089*
O4−0.0250 (4)1.0807 (2)−0.01851 (16)0.0440 (7)
H4−0.071 (5)1.119 (4)−0.053 (3)0.047 (13)*
O5−0.0456 (3)1.2233 (2)0.07781 (15)0.0367 (6)
O60.1913 (3)0.3434 (2)0.23203 (17)0.0481 (7)
N30.1075 (3)0.7453 (2)0.30021 (16)0.0274 (6)
N40.1229 (3)0.7088 (2)0.16093 (17)0.0294 (6)
C19−0.0173 (4)1.1217 (3)0.0617 (2)0.0313 (7)
C200.0290 (4)1.0279 (3)0.1289 (2)0.0306 (7)
C210.0299 (4)1.0543 (3)0.2180 (2)0.0339 (8)
H210.01151.13370.23400.041*
C220.0563 (4)0.9688 (3)0.2813 (2)0.0336 (8)
H220.05630.98790.34060.040*
C230.0834 (4)0.8530 (3)0.2568 (2)0.0277 (7)
C240.0788 (4)0.7156 (3)0.3880 (2)0.0344 (8)
H240.06360.62750.38740.041*
C25−0.0670 (4)0.7689 (4)0.4042 (2)0.0447 (9)
H25A−0.05870.85660.40730.054*
H25B−0.14960.74810.35530.054*
C26−0.1004 (4)0.7210 (4)0.4894 (2)0.0508 (10)
H26A−0.19110.76030.50160.061*
H26B−0.12070.63460.48340.061*
C270.0277 (4)0.7422 (4)0.5646 (2)0.0462 (9)
H27A0.00470.70540.61810.055*
H27B0.04010.82880.57500.055*
C280.1737 (4)0.6900 (4)0.5466 (2)0.0470 (10)
H28A0.25670.71050.59540.056*
H28B0.16570.60220.54320.056*
C290.2072 (4)0.7384 (4)0.4609 (2)0.0414 (9)
H29A0.22630.82500.46650.050*
H29B0.29780.69960.44830.050*
C300.1327 (4)0.6622 (3)0.2394 (2)0.0275 (7)
C310.0913 (4)0.8276 (3)0.1692 (2)0.0284 (7)
C320.0629 (4)0.9149 (3)0.1045 (2)0.0314 (7)
H320.06690.89710.04550.038*
C330.1669 (4)0.5375 (3)0.2578 (2)0.0316 (8)
C340.1464 (5)0.4501 (3)0.1967 (2)0.0427 (9)
H340.10560.46240.13650.051*
C350.2435 (4)0.3639 (3)0.3181 (2)0.0402 (9)
H350.28330.30440.35940.048*
C360.2317 (4)0.4778 (3)0.3373 (2)0.0396 (9)
H360.26070.51320.39330.047*
U11U22U33U12U13U23
O10.0570 (15)0.0210 (11)0.0376 (13)−0.0062 (11)0.0105 (11)−0.0037 (10)
O20.0536 (14)0.0232 (11)0.0261 (12)−0.0006 (10)0.0141 (10)0.0000 (10)
O30.0725 (19)0.0356 (14)0.0444 (15)−0.0083 (13)0.0205 (13)0.0069 (12)
N10.0425 (15)0.0356 (15)0.0242 (13)0.0028 (13)0.0148 (11)0.0024 (12)
N20.0379 (14)0.0243 (13)0.0250 (14)−0.0011 (11)0.0117 (11)0.0048 (11)
C10.0297 (16)0.0297 (17)0.0278 (17)−0.0007 (13)0.0047 (13)−0.0006 (13)
C20.0328 (16)0.0237 (15)0.0275 (16)0.0003 (13)0.0079 (13)−0.0013 (13)
C30.0452 (19)0.0275 (16)0.0318 (17)−0.0029 (15)0.0103 (14)−0.0042 (15)
C40.048 (2)0.0358 (19)0.0259 (17)−0.0027 (16)0.0119 (14)−0.0061 (15)
C50.0321 (17)0.0330 (17)0.0270 (16)0.0006 (14)0.0132 (13)0.0022 (14)
C60.059 (2)0.059 (2)0.0251 (18)0.012 (2)0.0184 (16)0.0053 (18)
C70.044 (2)0.065 (3)0.0292 (18)0.0042 (19)0.0172 (15)−0.0026 (18)
C80.080 (3)0.104 (4)0.039 (2)0.023 (3)0.031 (2)0.001 (3)
C90.065 (3)0.181 (7)0.036 (2)0.018 (4)0.020 (2)−0.018 (3)
C100.0334 (17)0.0314 (17)0.0308 (18)0.0010 (14)0.0129 (14)−0.0003 (14)
C110.0290 (15)0.0250 (15)0.0272 (16)0.0008 (13)0.0078 (12)0.0015 (13)
C120.0337 (17)0.0238 (15)0.0239 (15)−0.0008 (13)0.0090 (13)0.0002 (13)
C130.0413 (19)0.0357 (18)0.0326 (18)−0.0024 (16)0.0116 (14)0.0075 (15)
C140.059 (2)0.0337 (19)0.042 (2)−0.0020 (18)0.0239 (17)0.0069 (16)
C150.059 (2)0.049 (2)0.040 (2)−0.0145 (19)0.0240 (18)0.0060 (18)
C160.044 (2)0.039 (2)0.0387 (19)−0.0033 (16)0.0165 (16)0.0024 (16)
C170.053 (2)0.087 (3)0.046 (2)0.002 (2)0.0174 (19)−0.006 (2)
C180.052 (2)0.140 (5)0.029 (2)0.014 (3)0.0087 (18)−0.004 (3)
O40.080 (2)0.0250 (12)0.0266 (14)0.0108 (13)0.0106 (13)0.0031 (11)
O50.0565 (15)0.0239 (12)0.0341 (13)0.0049 (11)0.0194 (10)−0.0001 (10)
O60.0618 (17)0.0331 (13)0.0502 (16)0.0133 (12)0.0132 (13)0.0068 (12)
N30.0308 (13)0.0306 (13)0.0229 (13)0.0004 (11)0.0102 (11)0.0017 (11)
N40.0412 (15)0.0223 (13)0.0264 (14)−0.0007 (11)0.0110 (11)0.0007 (11)
C190.0425 (19)0.0275 (18)0.0264 (17)−0.0039 (15)0.0128 (14)−0.0035 (14)
C200.0419 (18)0.0232 (15)0.0286 (16)−0.0032 (14)0.0119 (13)−0.0026 (13)
C210.049 (2)0.0245 (17)0.0315 (18)−0.0046 (14)0.0153 (15)−0.0053 (14)
C220.046 (2)0.0330 (17)0.0237 (16)−0.0020 (15)0.0111 (14)−0.0031 (15)
C230.0319 (17)0.0284 (16)0.0252 (16)−0.0003 (13)0.0115 (13)0.0021 (13)
C240.0462 (19)0.0370 (18)0.0234 (16)0.0058 (16)0.0149 (14)0.0087 (15)
C250.0390 (19)0.060 (2)0.037 (2)0.0021 (18)0.0117 (15)0.0075 (18)
C260.045 (2)0.068 (3)0.044 (2)−0.002 (2)0.0188 (17)0.003 (2)
C270.055 (2)0.056 (2)0.0303 (18)0.0059 (19)0.0165 (16)0.0051 (18)
C280.050 (2)0.060 (3)0.0288 (19)−0.003 (2)0.0045 (16)0.0063 (18)
C290.0390 (19)0.050 (2)0.0376 (19)0.0004 (17)0.0135 (15)−0.0036 (17)
C300.0303 (16)0.0280 (16)0.0266 (16)−0.0033 (13)0.0115 (13)0.0032 (13)
C310.0356 (17)0.0237 (15)0.0279 (16)−0.0019 (13)0.0111 (13)−0.0016 (13)
C320.0461 (19)0.0281 (16)0.0220 (16)−0.0053 (15)0.0115 (13)−0.0027 (13)
C330.0312 (17)0.0310 (17)0.0356 (18)0.0018 (14)0.0137 (14)0.0069 (15)
C340.063 (2)0.0302 (18)0.038 (2)0.0144 (17)0.0168 (17)0.0068 (16)
C350.0377 (19)0.037 (2)0.046 (2)0.0070 (15)0.0099 (16)0.0137 (17)
C360.041 (2)0.040 (2)0.0349 (19)0.0012 (16)0.0021 (15)0.0108 (17)
O1—C11.207 (4)O4—C191.324 (4)
O2—C11.322 (4)O4—H40.75 (5)
O2—H20.99 (5)O5—C191.208 (4)
O3—C141.359 (5)O6—C341.350 (4)
O3—C151.366 (5)O6—C351.354 (5)
N1—C101.355 (4)N3—C231.383 (4)
N1—C51.387 (4)N3—C301.383 (4)
N1—C61.482 (4)N3—C241.482 (4)
N2—C101.335 (4)N4—C301.319 (4)
N2—C111.377 (4)N4—C311.378 (4)
C1—C21.492 (5)C19—C201.489 (5)
C2—C121.387 (4)C20—C321.378 (5)
C2—C31.400 (4)C20—C211.421 (5)
C3—C41.376 (5)C21—C221.366 (5)
C3—H30.9500C21—H210.9500
C4—C51.411 (5)C22—C231.393 (5)
C4—H4B0.9500C22—H220.9500
C5—C111.391 (4)C23—C311.413 (4)
C6—C171.459 (6)C24—C291.488 (5)
C6—C71.495 (6)C24—C251.528 (5)
C6—H61.0000C24—H241.0000
C7—C81.504 (5)C25—C261.518 (5)
C7—H7A0.9900C25—H25A0.9900
C7—H7B0.9900C25—H25B0.9900
C8—C91.468 (7)C26—C271.505 (5)
C8—H8A0.9900C26—H26A0.9900
C8—H8B0.9900C26—H26B0.9900
C9—C181.550 (8)C27—C281.533 (6)
C9—H9A0.9900C27—H27A0.9900
C9—H9B0.9900C27—H27B0.9900
C10—C131.462 (5)C28—C291.530 (5)
C11—C121.401 (4)C28—H28A0.9900
C12—H120.9500C28—H28B0.9900
C13—C141.346 (5)C29—H29A0.9900
C13—C161.447 (5)C29—H29B0.9900
C14—H140.9500C30—C331.452 (5)
C15—C161.326 (6)C31—C321.396 (5)
C15—H150.9500C32—H320.9500
C16—H160.9500C33—C341.358 (5)
C17—C181.549 (6)C33—C361.433 (4)
C17—H17A0.9900C34—H340.9500
C17—H17B0.9900C35—C361.324 (5)
C18—H18A0.9900C35—H350.9500
C18—H18B0.9900C36—H360.9500
C1—O2—H2114 (3)C19—O4—H4114 (3)
C14—O3—C15106.7 (3)C34—O6—C35105.9 (3)
C10—N1—C5106.7 (3)C23—N3—C30106.7 (2)
C10—N1—C6125.9 (3)C23—N3—C24127.5 (3)
C5—N1—C6127.4 (3)C30—N3—C24124.4 (3)
C10—N2—C11105.0 (3)C30—N4—C31106.0 (3)
O1—C1—O2123.4 (3)O5—C19—O4123.5 (3)
O1—C1—C2122.9 (3)O5—C19—C20124.5 (3)
O2—C1—C2113.6 (3)O4—C19—C20111.9 (3)
C12—C2—C3121.1 (3)C32—C20—C21120.4 (3)
C12—C2—C1119.7 (3)C32—C20—C19120.5 (3)
C3—C2—C1119.2 (3)C21—C20—C19119.1 (3)
C4—C3—C2122.3 (3)C22—C21—C20121.8 (3)
C4—C3—H3118.8C22—C21—H21119.1
C2—C3—H3118.8C20—C21—H21119.1
C3—C4—C5116.4 (3)C21—C22—C23118.4 (3)
C3—C4—H4B121.8C21—C22—H22120.8
C5—C4—H4B121.8C23—C22—H22120.8
N1—C5—C11105.6 (3)N3—C23—C22134.8 (3)
N1—C5—C4132.5 (3)N3—C23—C31105.3 (3)
C11—C5—C4121.8 (3)C22—C23—C31119.9 (3)
C17—C6—N1114.3 (3)N3—C24—C29114.3 (3)
C17—C6—C7114.9 (4)N3—C24—C25112.6 (3)
N1—C6—C7113.0 (3)C29—C24—C25112.8 (3)
C17—C6—H6104.4N3—C24—H24105.4
N1—C6—H6104.4C29—C24—H24105.4
C7—C6—H6104.4C25—C24—H24105.4
C6—C7—C8112.3 (3)C26—C25—C24109.8 (3)
C6—C7—H7A109.2C26—C25—H25A109.7
C8—C7—H7A109.2C24—C25—H25A109.7
C6—C7—H7B109.2C26—C25—H25B109.7
C8—C7—H7B109.2C24—C25—H25B109.7
H7A—C7—H7B107.9H25A—C25—H25B108.2
C9—C8—C7114.2 (4)C27—C26—C25111.5 (3)
C9—C8—H8A108.7C27—C26—H26A109.3
C7—C8—H8A108.7C25—C26—H26A109.3
C9—C8—H8B108.7C27—C26—H26B109.3
C7—C8—H8B108.7C25—C26—H26B109.3
H8A—C8—H8B107.6H26A—C26—H26B108.0
C8—C9—C18112.1 (5)C26—C27—C28111.6 (3)
C8—C9—H9A109.2C26—C27—H27A109.3
C18—C9—H9A109.2C28—C27—H27A109.3
C8—C9—H9B109.2C26—C27—H27B109.3
C18—C9—H9B109.2C28—C27—H27B109.3
H9A—C9—H9B107.9H27A—C27—H27B108.0
N2—C10—N1112.6 (3)C29—C28—C27110.8 (3)
N2—C10—C13121.8 (3)C29—C28—H28A109.5
N1—C10—C13125.5 (3)C27—C28—H28A109.5
N2—C11—C5110.1 (3)C29—C28—H28B109.5
N2—C11—C12129.0 (3)C27—C28—H28B109.5
C5—C11—C12120.8 (3)H28A—C28—H28B108.1
C2—C12—C11117.5 (3)C24—C29—C28110.1 (3)
C2—C12—H12121.2C24—C29—H29A109.6
C11—C12—H12121.2C28—C29—H29A109.6
C14—C13—C16105.7 (3)C24—C29—H29B109.6
C14—C13—C10126.2 (3)C28—C29—H29B109.6
C16—C13—C10127.8 (3)H29A—C29—H29B108.1
C13—C14—O3110.4 (3)N4—C30—N3112.2 (3)
C13—C14—H14124.8N4—C30—C33122.7 (3)
O3—C14—H14124.8N3—C30—C33125.1 (3)
C16—C15—O3110.7 (4)N4—C31—C32128.8 (3)
C16—C15—H15124.6N4—C31—C23109.7 (3)
O3—C15—H15124.6C32—C31—C23121.4 (3)
C15—C16—C13106.4 (4)C20—C32—C31117.9 (3)
C15—C16—H16126.8C20—C32—H32121.1
C13—C16—H16126.8C31—C32—H32121.1
C6—C17—C18109.2 (4)C34—C33—C36104.2 (3)
C6—C17—H17A109.8C34—C33—C30124.4 (3)
C18—C17—H17A109.8C36—C33—C30131.3 (3)
C6—C17—H17B109.8O6—C34—C33111.5 (3)
C18—C17—H17B109.8O6—C34—H34124.2
H17A—C17—H17B108.3C33—C34—H34124.2
C17—C18—C9108.6 (4)C36—C35—O6111.1 (3)
C17—C18—H18A110.0C36—C35—H35124.4
C9—C18—H18A110.0O6—C35—H35124.4
C17—C18—H18B110.0C35—C36—C33107.2 (3)
C9—C18—H18B110.0C35—C36—H36126.4
H18A—C18—H18B108.3C33—C36—H36126.4
D—H···AD—HH···AD···AD—H···A
O2—H2···N2i0.99 (5)1.66 (5)2.653 (3)173 (4)
O4—H4···N4ii0.75 (5)1.94 (5)2.653 (4)159 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N2i0.99 (5)1.66 (5)2.653 (3)173 (4)
O4—H4⋯N4ii0.75 (5)1.94 (5)2.653 (4)159 (5)

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
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