| Literature DB >> 21577545 |
A Elizabeth Baker1, René T Boeré.
Abstract
The title compound, C(3)H(2)Cl(3)N(3), crystallizes as the Z isomer with respect to the C=N bond. The -C(NH(2))=NCN functional group is effectively planar (r.m.s. deviation = 0.016 Å), with only the three Cl atoms out of the mol-ecular plane. A strong network of N-H⋯NEntities:
Year: 2009 PMID: 21577545 PMCID: PMC2970111 DOI: 10.1107/S1600536809031079
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H2Cl3N3 | |
| Monoclinic, | Melting point: 441 K |
| Hall symbol: -P 2yn | Mo |
| Cell parameters from 4497 reflections | |
| θ = 2.2–27.6° | |
| µ = 1.26 mm−1 | |
| β = 95.122 (1)° | |
| Block, colourless | |
| 0.41 × 0.27 × 0.21 mm |
| Bruker APEXII CCD area-detector diffractometer | 1552 independent reflections |
| Radiation source: Molybdenum | 1479 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 7459 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 1552 reflections | Δρmax = 0.41 e Å−3 |
| 83 parameters | Δρmin = −0.27 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0231 (18) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.23790 (5) | 0.15285 (5) | 0.181208 (18) | 0.02983 (10) | |
| Cl2 | 0.66794 (6) | 0.37010 (5) | 0.233709 (17) | 0.02976 (10) | |
| Cl3 | 0.33903 (6) | 0.53919 (5) | 0.119806 (17) | 0.02989 (10) | |
| C2 | 0.62444 (19) | 0.20753 (17) | 0.10178 (6) | 0.0179 (2) | |
| C3 | 0.7632 (2) | −0.09854 (17) | 0.06561 (7) | 0.0224 (2) | |
| C1 | 0.4692 (2) | 0.31232 (17) | 0.15584 (6) | 0.0196 (2) | |
| N2 | 0.62859 (18) | 0.01089 (15) | 0.10646 (5) | 0.0229 (2) | |
| N1 | 0.74493 (18) | 0.32334 (15) | 0.05999 (6) | 0.0230 (2) | |
| H1A | 0.8430 | 0.2689 | 0.0305 | 0.028* | |
| H1B | 0.7277 | 0.4555 | 0.0614 | 0.028* | |
| N3 | 0.8680 (2) | −0.21297 (17) | 0.03320 (6) | 0.0298 (2) |
| Cl1 | 0.02508 (16) | 0.02924 (17) | 0.03733 (18) | −0.00196 (11) | 0.01472 (13) | 0.00338 (12) |
| Cl2 | 0.03001 (17) | 0.03173 (17) | 0.02701 (16) | 0.00592 (12) | −0.00034 (12) | −0.01080 (12) |
| Cl3 | 0.03524 (18) | 0.02289 (16) | 0.03307 (17) | 0.01263 (12) | 0.01157 (13) | 0.00600 (11) |
| C2 | 0.0173 (5) | 0.0184 (5) | 0.0181 (5) | 0.0013 (4) | 0.0022 (4) | −0.0011 (4) |
| C3 | 0.0260 (6) | 0.0158 (5) | 0.0259 (6) | −0.0021 (4) | 0.0060 (5) | 0.0019 (4) |
| C1 | 0.0199 (5) | 0.0175 (5) | 0.0221 (5) | 0.0025 (4) | 0.0054 (4) | 0.0012 (4) |
| N2 | 0.0269 (5) | 0.0166 (5) | 0.0264 (5) | 0.0015 (4) | 0.0096 (4) | 0.0000 (4) |
| N1 | 0.0270 (5) | 0.0168 (5) | 0.0270 (5) | 0.0010 (4) | 0.0121 (4) | 0.0001 (4) |
| N3 | 0.0364 (6) | 0.0194 (5) | 0.0355 (6) | 0.0012 (4) | 0.0136 (5) | −0.0025 (4) |
| Cl1—C1 | 1.7549 (12) | C2—C1 | 1.5396 (15) |
| Cl2—C1 | 1.7733 (12) | C3—N3 | 1.1533 (17) |
| Cl3—C1 | 1.7686 (12) | C3—N2 | 1.3226 (16) |
| C2—N2 | 1.3032 (15) | N1—H1A | 0.8800 |
| C2—N1 | 1.3115 (15) | N1—H1B | 0.8800 |
| N2—C2—N1 | 127.94 (11) | C2—C1—Cl2 | 106.31 (7) |
| N2—C2—C1 | 114.43 (10) | Cl1—C1—Cl2 | 109.15 (6) |
| N1—C2—C1 | 117.52 (10) | Cl3—C1—Cl2 | 108.98 (6) |
| N3—C3—N2 | 172.16 (13) | C2—N2—C3 | 121.04 (10) |
| C2—C1—Cl1 | 111.47 (8) | C2—N1—H1A | 120.0 |
| C2—C1—Cl3 | 111.73 (8) | C2—N1—H1B | 120.0 |
| Cl1—C1—Cl3 | 109.12 (6) | H1A—N1—H1B | 120.0 |
| N2—C2—C1—Cl1 | −26.28 (12) | N2—C2—C1—Cl2 | 92.56 (10) |
| N1—C2—C1—Cl1 | 157.21 (9) | N1—C2—C1—Cl2 | −83.95 (11) |
| N2—C2—C1—Cl3 | −148.66 (9) | N1—C2—N2—C3 | −0.9 (2) |
| N1—C2—C1—Cl3 | 34.83 (12) | C1—C2—N2—C3 | −176.95 (10) |
| H··· | ||||
| N1—H1A···N3i | 0.88 | 2.10 | 2.9583 (15) | 164 |
| N1—H1B···N3ii | 0.88 | 2.40 | 3.1893 (15) | 150 |
| Value | (I) | (II) | (III) | (IV) | (V) | |
| C2-N1 | 1.3115 (15) | 1.308 (4) | 1.308 (3) | 1.307 (2) | 1.387 (4) | |
| C2-N2 | 1.3032 (15) | 1.320 (4) | 1.317 (3) | 1.306 (2) | 1.2737 (4) | |
| ΔCN | 0.008 | -0.012 | -0.009 | 0.001 | 0.114 | |
| C2-C1 | 1.5396 (15) | 1.520 (4) | 1.513 (3) | 1.522 (3) | 1.525 (5) | |
| C3-N3 | 1.1533 (17) | 1.164 (4) | 1.1567 (3) | 1.153 (3) | ||
| C3-N2 | 1.3226 (16) | 1.320 (4) | 1.333 (3) | 1.322 (3) | ||
| N2-C2-N1 | 127.94 (11) | 118.0 (2) | 125.9 (2) | 126.0 (2) | 127.7 (3) | |
| N2-C2-C1 | 114.43 (10) | 124.1 (2) | 116.8 (2) | 114.9 (1) | 117.2 (3) | |
| N1-C2-C1 | 117.52 (10) | 117.9 (2) | 117.3 (2) | 118.7 (1) | 115.0 (3) | |
| C2-N2-C3 | 121.04 (10) | 119.1 (2) | 118.7 (1) | |||
| N3-C3-N2 | 172.16 (13) | 173.2 (2) | 173.9 (3) | 173.2 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.88 | 2.10 | 2.9583 (15) | 164 |
| N1—H1 | 0.88 | 2.40 | 3.1893 (15) | 150 |
Symmetry codes: (i) ; (ii) .
Comparative distances (Å) and angles (°) in amidines (I)–(V)
| Value | (I) | (II) | (III) | (IV) | (V) | |
|---|---|---|---|---|---|---|
| C2—N1 | 1.3115 (15) | 1.308 (4) | 1.308 (3) | 1.307 (2) | 1.387 (4) | |
| C2—N2 | 1.3032 (15) | 1.320 (4) | 1.317 (3) | 1.306 (2) | 1.2737 (4) | |
| ΔCN | 0.008 | −0.012 | −0.009 | 0.001 | 0.114 | |
| C2—C1 | 1.5396 (15) | 1.520 (4) | 1.513 (3) | 1.522 (3) | 1.525 (5) | |
| C3—N3 | 1.1533 (17) | 1.164 (4) | 1.1567 (3) | 1.153 (3) | ||
| C3—N2 | 1.3226 (16) | 1.320 (4) | 1.333 (3) | 1.322 (3) | ||
| N2—C2—N1 | 127.94 (11) | 118.0 (2) | 125.9 (2) | 126.0 (2) | 127.7 (3) | |
| N2—C2—C1 | 114.43 (10) | 124.1 (2) | 116.8 (2) | 114.9 (1) | 117.2 (3) | |
| N1—C2—C1 | 117.52 (10) | 117.9 (2) | 117.3 (2) | 118.7 (1) | 115.0 (3) | |
| C2—N2—C3 | 121.04 (10) | 119.1 (2) | 118.7 (1) | |||
| N3—C3—N2 | 172.16 (13) | 173.2 (2) | 173.9 (3) | 173.2 (2) |
Compound (I) corresponds to the title compound and (II)–(V) are defined in the Related Literature section. Atom numbering corresponds to that in Fig. 1 (in Supplementary materials).