Literature DB >> 21577540

4,11-Diaza-1,8-diazo-niacyclo-tetra-decane dichloride hemihydrate.

Nam-Ho Kim, In-Chul Hwang, Kwang Ha.   

Abstract

In the title compound, C(10)H(26)N(4) (2+)·2Cl(-)·0.5H(2)O, the cyclam (1,4,8,11-tetra-azacyclo-tetra-decane) dication adopts an endodentate conformation which my be inflenced by intra-molecular N-H⋯N hydrogen bonding. In the crystal structure, the components are linked by N-H⋯Cl and O-H⋯Cl hydrogen bonds into chains along [100]. The water molecule is disordered over two sites in a 50:50 ratio.

Entities:  

Year:  2009        PMID: 21577540      PMCID: PMC2970031          DOI: 10.1107/S1600536809031110

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of [H2(cyclam)](ClO4)2, see: Nave & Truter (1974 ▶). For the crystal structures of [H4(cyclam)]X·nH2O [X = Cl4, Br4, (ClO4)4, (SCN)4, (SO4)2 or (p-CH3C6H4SO3)4], see: Robinson et al. (1989 ▶); Subramanian & Zaworotko (1995 ▶).

Experimental

Crystal data

C10H26N4 2+·2Cl−·0.5H2O M = 282.25 Monoclinic, a = 6.827 (7) Å b = 14.071 (16) Å c = 16.055 (16) Å β = 97.84 (3)° V = 1528 (3) Å3 Z = 4 Mo Kα radiation μ = 0.41 mm−1 T = 293 K 0.25 × 0.10 × 0.10 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.806, T max = 0.959 8725 measured reflections 3136 independent reflections 1280 reflections with I > 2σ(I) R int = 0.110

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.151 S = 0.98 3136 reflections 154 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809031110/lh2872sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031110/lh2872Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H26N42+·2Cl·0.5H2OF(000) = 612
Mr = 282.25Dx = 1.227 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 418 reflections
a = 6.827 (7) Åθ = 2.6–16.2°
b = 14.071 (16) ŵ = 0.41 mm1
c = 16.055 (16) ÅT = 293 K
β = 97.84 (3)°Needle, colorless
V = 1528 (3) Å30.25 × 0.10 × 0.10 mm
Z = 4
Bruker SMART 1000 CCD diffractometer3136 independent reflections
Radiation source: fine-focus sealed tube1280 reflections with I > 2σ(I)
graphiteRint = 0.110
φ and ω scansθmax = 26.4°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −5→8
Tmin = 0.806, Tmax = 0.959k = −17→17
8725 measured reflectionsl = −18→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.151H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0321P)2] where P = (Fo2 + 2Fc2)/3
3136 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.7249 (6)0.4173 (2)0.2123 (2)0.0456 (11)
H110.62270.42900.23650.055*
N20.5366 (5)0.2363 (2)0.1733 (2)0.0418 (10)
H210.42330.23970.19090.050*
H220.62920.26110.20840.050*
N30.8016 (5)0.1650 (2)0.3153 (2)0.0414 (10)
H310.90710.16040.29180.050*
N40.9882 (5)0.3461 (3)0.3557 (2)0.0434 (10)
H410.90660.31870.31750.052*
H421.09600.34100.33390.052*
C10.6795 (8)0.4357 (3)0.1219 (3)0.0552 (15)
H1A0.79380.42010.09470.066*
H1B0.65150.50280.11290.066*
C20.5032 (7)0.3779 (4)0.0822 (3)0.0567 (15)
H2A0.39020.39280.11050.068*
H2B0.47090.39640.02380.068*
C30.5392 (7)0.2717 (4)0.0867 (3)0.0526 (14)
H3A0.43770.23950.04880.063*
H3B0.66620.25750.06890.063*
C40.5882 (7)0.1337 (3)0.1843 (3)0.0531 (14)
H4A0.70300.11960.15700.064*
H4B0.47890.09500.15850.064*
C50.6317 (7)0.1110 (3)0.2767 (3)0.0535 (14)
H5A0.51750.12630.30400.064*
H5B0.65820.04360.28400.064*
C60.8527 (8)0.1452 (4)0.4051 (3)0.0612 (15)
H6A0.88300.07820.41270.073*
H6B0.73950.15920.43350.073*
C71.0288 (8)0.2034 (4)0.4450 (3)0.0596 (15)
H7A1.06240.18390.50310.071*
H7B1.14140.18950.41610.071*
C80.9932 (8)0.3095 (4)0.4424 (3)0.0559 (14)
H8A0.86860.32340.46250.067*
H8B1.09770.34120.47920.067*
C90.9384 (7)0.4482 (3)0.3442 (3)0.0520 (14)
H9A1.04820.48670.36990.062*
H9B0.82370.46300.37140.062*
C100.8954 (7)0.4709 (3)0.2517 (3)0.0513 (14)
H10A0.86970.53840.24440.062*
H10B1.00990.45530.22460.062*
Cl10.08543 (19)0.22997 (10)0.17133 (7)0.0588 (4)
Cl20.4464 (2)0.35637 (10)0.36069 (8)0.0720 (5)
O10.6491 (12)0.0033 (6)0.0003 (5)0.105 (3)0.50
H1O0.6316−0.03550.03710.157*0.50
H2O0.60300.0408−0.03700.157*0.50
U11U22U33U12U13U23
N10.042 (2)0.049 (3)0.047 (3)−0.002 (2)0.012 (2)0.002 (2)
N20.039 (2)0.047 (3)0.039 (2)−0.004 (2)0.002 (2)−0.0032 (19)
N30.039 (2)0.043 (3)0.044 (3)−0.004 (2)0.011 (2)0.0023 (19)
N40.041 (2)0.054 (3)0.035 (2)−0.005 (2)0.005 (2)−0.0072 (19)
C10.065 (4)0.051 (4)0.050 (4)0.004 (3)0.012 (3)0.012 (3)
C20.053 (4)0.074 (4)0.041 (3)0.010 (3)−0.002 (3)0.011 (3)
C30.049 (3)0.073 (4)0.036 (3)−0.002 (3)0.004 (3)−0.006 (3)
C40.059 (4)0.043 (4)0.057 (4)0.000 (3)0.006 (3)−0.007 (3)
C50.051 (3)0.039 (3)0.073 (4)−0.013 (3)0.016 (3)0.001 (3)
C60.064 (4)0.072 (4)0.049 (4)−0.002 (3)0.012 (3)0.012 (3)
C70.061 (4)0.075 (4)0.041 (3)0.008 (3)0.003 (3)0.015 (3)
C80.055 (4)0.076 (4)0.034 (3)−0.001 (3)−0.001 (3)−0.003 (3)
C90.047 (3)0.041 (3)0.066 (4)−0.005 (3)0.004 (3)−0.007 (3)
C100.049 (3)0.039 (3)0.067 (4)−0.003 (3)0.012 (3)0.009 (3)
Cl10.0451 (8)0.0785 (10)0.0542 (9)−0.0012 (7)0.0115 (7)0.0022 (7)
Cl20.0491 (9)0.0979 (12)0.0713 (10)−0.0110 (8)0.0162 (8)−0.0200 (8)
O10.111 (7)0.116 (7)0.088 (6)0.008 (6)0.020 (6)0.047 (5)
N1—C101.457 (6)C3—H3B0.9700
N1—C11.466 (5)C4—C51.508 (6)
N1—H110.8600C4—H4A0.9700
N2—C31.479 (5)C4—H4B0.9700
N2—C41.491 (5)C5—H5A0.9700
N2—H210.8600C5—H5B0.9700
N2—H220.8600C6—C71.522 (6)
N3—C51.453 (5)C6—H6A0.9700
N3—C61.463 (5)C6—H6B0.9700
N3—H310.8601C7—C81.512 (6)
N4—C81.480 (5)C7—H7A0.9700
N4—C91.483 (5)C7—H7B0.9700
N4—H410.8600C8—H8A0.9700
N4—H420.8600C8—H8B0.9700
C1—C21.519 (6)C9—C101.507 (6)
C1—H1A0.9700C9—H9A0.9700
C1—H1B0.9700C9—H9B0.9700
C2—C31.515 (6)C10—H10A0.9700
C2—H2A0.9700C10—H10B0.9700
C2—H2B0.9700O1—H1O0.8253
C3—H3A0.9700O1—H2O0.8266
C10—N1—C1112.8 (4)C5—C4—H4B109.8
C10—N1—H11110.7H4A—C4—H4B108.2
C1—N1—H11109.8N3—C5—C4110.3 (4)
C3—N2—C4113.8 (3)N3—C5—H5A109.6
C3—N2—H21114.6C4—C5—H5A109.6
C4—N2—H21102.9N3—C5—H5B109.6
C3—N2—H22112.1C4—C5—H5B109.6
C4—N2—H22100.0H5A—C5—H5B108.1
H21—N2—H22112.2N3—C6—C7112.4 (4)
C5—N3—C6112.9 (4)N3—C6—H6A109.1
C5—N3—H31116.2C7—C6—H6A109.1
C6—N3—H31108.4N3—C6—H6B109.1
C8—N4—C9115.4 (3)C7—C6—H6B109.1
C8—N4—H41116.4H6A—C6—H6B107.9
C9—N4—H41103.3C8—C7—C6113.9 (4)
C8—N4—H42116.2C8—C7—H7A108.8
C9—N4—H42103.0C6—C7—H7A108.8
H41—N4—H42100.4C8—C7—H7B108.8
N1—C1—C2111.6 (4)C6—C7—H7B108.8
N1—C1—H1A109.3H7A—C7—H7B107.7
C2—C1—H1A109.3N4—C8—C7110.6 (4)
N1—C1—H1B109.3N4—C8—H8A109.5
C2—C1—H1B109.3C7—C8—H8A109.5
H1A—C1—H1B108.0N4—C8—H8B109.5
C3—C2—C1113.2 (4)C7—C8—H8B109.5
C3—C2—H2A108.9H8A—C8—H8B108.1
C1—C2—H2A108.9N4—C9—C10109.8 (4)
C3—C2—H2B108.9N4—C9—H9A109.7
C1—C2—H2B108.9C10—C9—H9A109.7
H2A—C2—H2B107.7N4—C9—H9B109.7
N2—C3—C2110.7 (4)C10—C9—H9B109.7
N2—C3—H3A109.5H9A—C9—H9B108.2
C2—C3—H3A109.5N1—C10—C9110.8 (4)
N2—C3—H3B109.5N1—C10—H10A109.5
C2—C3—H3B109.5C9—C10—H10A109.5
H3A—C3—H3B108.1N1—C10—H10B109.5
N2—C4—C5109.5 (4)C9—C10—H10B109.5
N2—C4—H4A109.8H10A—C10—H10B108.1
C5—C4—H4A109.8H1O—O1—H2O149.6
N2—C4—H4B109.8
C10—N1—C1—C2179.2 (4)C5—N3—C6—C7−179.1 (4)
N1—C1—C2—C3−63.7 (5)N3—C6—C7—C862.9 (6)
C4—N2—C3—C2−175.0 (4)C9—N4—C8—C7175.4 (4)
C1—C2—C3—N273.6 (5)C6—C7—C8—N4−71.8 (5)
C3—N2—C4—C5165.8 (4)C8—N4—C9—C10−167.9 (4)
C6—N3—C5—C4−179.4 (4)C1—N1—C10—C9−179.0 (4)
N2—C4—C5—N3−62.4 (5)N4—C9—C10—N162.1 (5)
D—H···AD—HH···AD···AD—H···A
N1—H11···Cl20.862.673.356 (5)138
N2—H21···Cl10.862.293.077 (5)153
N2—H22···N10.862.292.882 (6)126
N2—H22···N30.862.372.890 (5)119
N3—H31···Cl1i0.862.613.340 (4)143
N4—H41···N10.862.402.899 (5)118
N4—H41···N30.862.282.882 (6)127
N4—H42···Cl2i0.862.383.122 (5)144
O1—H1O···Cl2ii0.832.353.175 (8)175
O1—H2O···Cl2iii0.832.343.160 (8)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H11⋯Cl20.862.673.356 (5)138
N2—H21⋯Cl10.862.293.077 (5)153
N2—H22⋯N10.862.292.882 (6)126
N2—H22⋯N30.862.372.890 (5)119
N3—H31⋯Cl1i0.862.613.340 (4)143
N4—H41⋯N10.862.402.899 (5)118
N4—H41⋯N30.862.282.882 (6)127
N4—H42⋯Cl2i0.862.383.122 (5)144
O1—H1O⋯Cl2ii0.832.353.175 (8)175
O1—H2O⋯Cl2iii0.832.343.160 (8)175

Symmetry codes: (i) ; (ii) ; (iii) .

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