| Literature DB >> 21577540 |
Nam-Ho Kim, In-Chul Hwang, Kwang Ha.
Abstract
In the title compound, C(10)H(26)N(4) (2+)·2Cl(-)·0.5H(2)O, the cyclam (1,4,8,11-tetra-azacyclo-tetra-decane) dication adopts an endodentate conformation which my be inflenced by intra-molecular N-H⋯N hydrogen bonding. In the crystal structure, the components are linked by N-H⋯Cl and O-H⋯Cl hydrogen bonds into chains along [100]. The water molecule is disordered over two sites in a 50:50 ratio.Entities:
Year: 2009 PMID: 21577540 PMCID: PMC2970031 DOI: 10.1107/S1600536809031110
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H26N42+·2Cl−·0.5H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 418 reflections |
| θ = 2.6–16.2° | |
| µ = 0.41 mm−1 | |
| β = 97.84 (3)° | Needle, colorless |
| 0.25 × 0.10 × 0.10 mm | |
| Bruker SMART 1000 CCD diffractometer | 3136 independent reflections |
| Radiation source: fine-focus sealed tube | 1280 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.4°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 8725 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3136 reflections | (Δ/σ)max < 0.001 |
| 154 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| N1 | 0.7249 (6) | 0.4173 (2) | 0.2123 (2) | 0.0456 (11) | |
| H11 | 0.6227 | 0.4290 | 0.2365 | 0.055* | |
| N2 | 0.5366 (5) | 0.2363 (2) | 0.1733 (2) | 0.0418 (10) | |
| H21 | 0.4233 | 0.2397 | 0.1909 | 0.050* | |
| H22 | 0.6292 | 0.2611 | 0.2084 | 0.050* | |
| N3 | 0.8016 (5) | 0.1650 (2) | 0.3153 (2) | 0.0414 (10) | |
| H31 | 0.9071 | 0.1604 | 0.2918 | 0.050* | |
| N4 | 0.9882 (5) | 0.3461 (3) | 0.3557 (2) | 0.0434 (10) | |
| H41 | 0.9066 | 0.3187 | 0.3175 | 0.052* | |
| H42 | 1.0960 | 0.3410 | 0.3339 | 0.052* | |
| C1 | 0.6795 (8) | 0.4357 (3) | 0.1219 (3) | 0.0552 (15) | |
| H1A | 0.7938 | 0.4201 | 0.0947 | 0.066* | |
| H1B | 0.6515 | 0.5028 | 0.1129 | 0.066* | |
| C2 | 0.5032 (7) | 0.3779 (4) | 0.0822 (3) | 0.0567 (15) | |
| H2A | 0.3902 | 0.3928 | 0.1105 | 0.068* | |
| H2B | 0.4709 | 0.3964 | 0.0238 | 0.068* | |
| C3 | 0.5392 (7) | 0.2717 (4) | 0.0867 (3) | 0.0526 (14) | |
| H3A | 0.4377 | 0.2395 | 0.0488 | 0.063* | |
| H3B | 0.6662 | 0.2575 | 0.0689 | 0.063* | |
| C4 | 0.5882 (7) | 0.1337 (3) | 0.1843 (3) | 0.0531 (14) | |
| H4A | 0.7030 | 0.1196 | 0.1570 | 0.064* | |
| H4B | 0.4789 | 0.0950 | 0.1585 | 0.064* | |
| C5 | 0.6317 (7) | 0.1110 (3) | 0.2767 (3) | 0.0535 (14) | |
| H5A | 0.5175 | 0.1263 | 0.3040 | 0.064* | |
| H5B | 0.6582 | 0.0436 | 0.2840 | 0.064* | |
| C6 | 0.8527 (8) | 0.1452 (4) | 0.4051 (3) | 0.0612 (15) | |
| H6A | 0.8830 | 0.0782 | 0.4127 | 0.073* | |
| H6B | 0.7395 | 0.1592 | 0.4335 | 0.073* | |
| C7 | 1.0288 (8) | 0.2034 (4) | 0.4450 (3) | 0.0596 (15) | |
| H7A | 1.0624 | 0.1839 | 0.5031 | 0.071* | |
| H7B | 1.1414 | 0.1895 | 0.4161 | 0.071* | |
| C8 | 0.9932 (8) | 0.3095 (4) | 0.4424 (3) | 0.0559 (14) | |
| H8A | 0.8686 | 0.3234 | 0.4625 | 0.067* | |
| H8B | 1.0977 | 0.3412 | 0.4792 | 0.067* | |
| C9 | 0.9384 (7) | 0.4482 (3) | 0.3442 (3) | 0.0520 (14) | |
| H9A | 1.0482 | 0.4867 | 0.3699 | 0.062* | |
| H9B | 0.8237 | 0.4630 | 0.3714 | 0.062* | |
| C10 | 0.8954 (7) | 0.4709 (3) | 0.2517 (3) | 0.0513 (14) | |
| H10A | 0.8697 | 0.5384 | 0.2444 | 0.062* | |
| H10B | 1.0099 | 0.4553 | 0.2246 | 0.062* | |
| Cl1 | 0.08543 (19) | 0.22997 (10) | 0.17133 (7) | 0.0588 (4) | |
| Cl2 | 0.4464 (2) | 0.35637 (10) | 0.36069 (8) | 0.0720 (5) | |
| O1 | 0.6491 (12) | 0.0033 (6) | 0.0003 (5) | 0.105 (3) | 0.50 |
| H1O | 0.6316 | −0.0355 | 0.0371 | 0.157* | 0.50 |
| H2O | 0.6030 | 0.0408 | −0.0370 | 0.157* | 0.50 |
| N1 | 0.042 (2) | 0.049 (3) | 0.047 (3) | −0.002 (2) | 0.012 (2) | 0.002 (2) |
| N2 | 0.039 (2) | 0.047 (3) | 0.039 (2) | −0.004 (2) | 0.002 (2) | −0.0032 (19) |
| N3 | 0.039 (2) | 0.043 (3) | 0.044 (3) | −0.004 (2) | 0.011 (2) | 0.0023 (19) |
| N4 | 0.041 (2) | 0.054 (3) | 0.035 (2) | −0.005 (2) | 0.005 (2) | −0.0072 (19) |
| C1 | 0.065 (4) | 0.051 (4) | 0.050 (4) | 0.004 (3) | 0.012 (3) | 0.012 (3) |
| C2 | 0.053 (4) | 0.074 (4) | 0.041 (3) | 0.010 (3) | −0.002 (3) | 0.011 (3) |
| C3 | 0.049 (3) | 0.073 (4) | 0.036 (3) | −0.002 (3) | 0.004 (3) | −0.006 (3) |
| C4 | 0.059 (4) | 0.043 (4) | 0.057 (4) | 0.000 (3) | 0.006 (3) | −0.007 (3) |
| C5 | 0.051 (3) | 0.039 (3) | 0.073 (4) | −0.013 (3) | 0.016 (3) | 0.001 (3) |
| C6 | 0.064 (4) | 0.072 (4) | 0.049 (4) | −0.002 (3) | 0.012 (3) | 0.012 (3) |
| C7 | 0.061 (4) | 0.075 (4) | 0.041 (3) | 0.008 (3) | 0.003 (3) | 0.015 (3) |
| C8 | 0.055 (4) | 0.076 (4) | 0.034 (3) | −0.001 (3) | −0.001 (3) | −0.003 (3) |
| C9 | 0.047 (3) | 0.041 (3) | 0.066 (4) | −0.005 (3) | 0.004 (3) | −0.007 (3) |
| C10 | 0.049 (3) | 0.039 (3) | 0.067 (4) | −0.003 (3) | 0.012 (3) | 0.009 (3) |
| Cl1 | 0.0451 (8) | 0.0785 (10) | 0.0542 (9) | −0.0012 (7) | 0.0115 (7) | 0.0022 (7) |
| Cl2 | 0.0491 (9) | 0.0979 (12) | 0.0713 (10) | −0.0110 (8) | 0.0162 (8) | −0.0200 (8) |
| O1 | 0.111 (7) | 0.116 (7) | 0.088 (6) | 0.008 (6) | 0.020 (6) | 0.047 (5) |
| N1—C10 | 1.457 (6) | C3—H3B | 0.9700 |
| N1—C1 | 1.466 (5) | C4—C5 | 1.508 (6) |
| N1—H11 | 0.8600 | C4—H4A | 0.9700 |
| N2—C3 | 1.479 (5) | C4—H4B | 0.9700 |
| N2—C4 | 1.491 (5) | C5—H5A | 0.9700 |
| N2—H21 | 0.8600 | C5—H5B | 0.9700 |
| N2—H22 | 0.8600 | C6—C7 | 1.522 (6) |
| N3—C5 | 1.453 (5) | C6—H6A | 0.9700 |
| N3—C6 | 1.463 (5) | C6—H6B | 0.9700 |
| N3—H31 | 0.8601 | C7—C8 | 1.512 (6) |
| N4—C8 | 1.480 (5) | C7—H7A | 0.9700 |
| N4—C9 | 1.483 (5) | C7—H7B | 0.9700 |
| N4—H41 | 0.8600 | C8—H8A | 0.9700 |
| N4—H42 | 0.8600 | C8—H8B | 0.9700 |
| C1—C2 | 1.519 (6) | C9—C10 | 1.507 (6) |
| C1—H1A | 0.9700 | C9—H9A | 0.9700 |
| C1—H1B | 0.9700 | C9—H9B | 0.9700 |
| C2—C3 | 1.515 (6) | C10—H10A | 0.9700 |
| C2—H2A | 0.9700 | C10—H10B | 0.9700 |
| C2—H2B | 0.9700 | O1—H1O | 0.8253 |
| C3—H3A | 0.9700 | O1—H2O | 0.8266 |
| C10—N1—C1 | 112.8 (4) | C5—C4—H4B | 109.8 |
| C10—N1—H11 | 110.7 | H4A—C4—H4B | 108.2 |
| C1—N1—H11 | 109.8 | N3—C5—C4 | 110.3 (4) |
| C3—N2—C4 | 113.8 (3) | N3—C5—H5A | 109.6 |
| C3—N2—H21 | 114.6 | C4—C5—H5A | 109.6 |
| C4—N2—H21 | 102.9 | N3—C5—H5B | 109.6 |
| C3—N2—H22 | 112.1 | C4—C5—H5B | 109.6 |
| C4—N2—H22 | 100.0 | H5A—C5—H5B | 108.1 |
| H21—N2—H22 | 112.2 | N3—C6—C7 | 112.4 (4) |
| C5—N3—C6 | 112.9 (4) | N3—C6—H6A | 109.1 |
| C5—N3—H31 | 116.2 | C7—C6—H6A | 109.1 |
| C6—N3—H31 | 108.4 | N3—C6—H6B | 109.1 |
| C8—N4—C9 | 115.4 (3) | C7—C6—H6B | 109.1 |
| C8—N4—H41 | 116.4 | H6A—C6—H6B | 107.9 |
| C9—N4—H41 | 103.3 | C8—C7—C6 | 113.9 (4) |
| C8—N4—H42 | 116.2 | C8—C7—H7A | 108.8 |
| C9—N4—H42 | 103.0 | C6—C7—H7A | 108.8 |
| H41—N4—H42 | 100.4 | C8—C7—H7B | 108.8 |
| N1—C1—C2 | 111.6 (4) | C6—C7—H7B | 108.8 |
| N1—C1—H1A | 109.3 | H7A—C7—H7B | 107.7 |
| C2—C1—H1A | 109.3 | N4—C8—C7 | 110.6 (4) |
| N1—C1—H1B | 109.3 | N4—C8—H8A | 109.5 |
| C2—C1—H1B | 109.3 | C7—C8—H8A | 109.5 |
| H1A—C1—H1B | 108.0 | N4—C8—H8B | 109.5 |
| C3—C2—C1 | 113.2 (4) | C7—C8—H8B | 109.5 |
| C3—C2—H2A | 108.9 | H8A—C8—H8B | 108.1 |
| C1—C2—H2A | 108.9 | N4—C9—C10 | 109.8 (4) |
| C3—C2—H2B | 108.9 | N4—C9—H9A | 109.7 |
| C1—C2—H2B | 108.9 | C10—C9—H9A | 109.7 |
| H2A—C2—H2B | 107.7 | N4—C9—H9B | 109.7 |
| N2—C3—C2 | 110.7 (4) | C10—C9—H9B | 109.7 |
| N2—C3—H3A | 109.5 | H9A—C9—H9B | 108.2 |
| C2—C3—H3A | 109.5 | N1—C10—C9 | 110.8 (4) |
| N2—C3—H3B | 109.5 | N1—C10—H10A | 109.5 |
| C2—C3—H3B | 109.5 | C9—C10—H10A | 109.5 |
| H3A—C3—H3B | 108.1 | N1—C10—H10B | 109.5 |
| N2—C4—C5 | 109.5 (4) | C9—C10—H10B | 109.5 |
| N2—C4—H4A | 109.8 | H10A—C10—H10B | 108.1 |
| C5—C4—H4A | 109.8 | H1O—O1—H2O | 149.6 |
| N2—C4—H4B | 109.8 | ||
| C10—N1—C1—C2 | 179.2 (4) | C5—N3—C6—C7 | −179.1 (4) |
| N1—C1—C2—C3 | −63.7 (5) | N3—C6—C7—C8 | 62.9 (6) |
| C4—N2—C3—C2 | −175.0 (4) | C9—N4—C8—C7 | 175.4 (4) |
| C1—C2—C3—N2 | 73.6 (5) | C6—C7—C8—N4 | −71.8 (5) |
| C3—N2—C4—C5 | 165.8 (4) | C8—N4—C9—C10 | −167.9 (4) |
| C6—N3—C5—C4 | −179.4 (4) | C1—N1—C10—C9 | −179.0 (4) |
| N2—C4—C5—N3 | −62.4 (5) | N4—C9—C10—N1 | 62.1 (5) |
| H··· | ||||
| N1—H11···Cl2 | 0.86 | 2.67 | 3.356 (5) | 138 |
| N2—H21···Cl1 | 0.86 | 2.29 | 3.077 (5) | 153 |
| N2—H22···N1 | 0.86 | 2.29 | 2.882 (6) | 126 |
| N2—H22···N3 | 0.86 | 2.37 | 2.890 (5) | 119 |
| N3—H31···Cl1i | 0.86 | 2.61 | 3.340 (4) | 143 |
| N4—H41···N1 | 0.86 | 2.40 | 2.899 (5) | 118 |
| N4—H41···N3 | 0.86 | 2.28 | 2.882 (6) | 127 |
| N4—H42···Cl2i | 0.86 | 2.38 | 3.122 (5) | 144 |
| O1—H1O···Cl2ii | 0.83 | 2.35 | 3.175 (8) | 175 |
| O1—H2O···Cl2iii | 0.83 | 2.34 | 3.160 (8) | 175 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H11⋯Cl2 | 0.86 | 2.67 | 3.356 (5) | 138 |
| N2—H21⋯Cl1 | 0.86 | 2.29 | 3.077 (5) | 153 |
| N2—H22⋯N1 | 0.86 | 2.29 | 2.882 (6) | 126 |
| N2—H22⋯N3 | 0.86 | 2.37 | 2.890 (5) | 119 |
| N3—H31⋯Cl1i | 0.86 | 2.61 | 3.340 (4) | 143 |
| N4—H41⋯N1 | 0.86 | 2.40 | 2.899 (5) | 118 |
| N4—H41⋯N3 | 0.86 | 2.28 | 2.882 (6) | 127 |
| N4—H42⋯Cl2i | 0.86 | 2.38 | 3.122 (5) | 144 |
| O1—H1 | 0.83 | 2.35 | 3.175 (8) | 175 |
| O1—H2 | 0.83 | 2.34 | 3.160 (8) | 175 |
Symmetry codes: (i) ; (ii) ; (iii) .