Literature DB >> 21577534

2,5-Bis(5-bromo-2-thien-yl)thio-phene.

Mamoun M Bader1.   

Abstract

In the crystal structure of the title compound, C(12)H(6)Br(2)S(3), the mol-ecules are planar (r.m.s. deviation = 0.06 Å). Consecutive mol-ecules do not stack in a planar fashion. There is an angle of 81.7 (12)° between the planes of the closest mol-ecules.

Entities:  

Year:  2009        PMID: 21577534      PMCID: PMC2970117          DOI: 10.1107/S1600536809030864

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Pyrka et al. (1988 ▶). For literature related to synthesis, see: Hoffmann & Carlsen (1999 ▶); Mei et al. (2009 ▶). For a recent review of oligothio­phenes, see: Mishra et al. (2009 ▶).

Experimental

Crystal data

C12H6Br2S3 M = 406.17 Orthorhombic, a = 7.6216 (16) Å b = 30.003 (6) Å c = 5.8841 (13) Å V = 1345.5 (5) Å3 Z = 4 Mo Kα radiation μ = 6.46 mm−1 T = 173 K 0.37 × 0.24 × 0.10 mm

Data collection

Siemens SMART Platform CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.184, T max = 0.524 9565 measured reflections 3045 independent reflections 2818 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.114 S = 1.25 3045 reflections 155 parameters 1 restraint H-atom parameters constrained Δρmax = 1.24 e Å−3 Δρmin = −0.62 e Å−3 Absolute structure: Flack (1983 ▶), 1341 Friedel pairs Flack parameter: 0.00 (7) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809030864/ng2619sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030864/ng2619Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H6Br2S3F(000) = 784
Mr = 406.17Dx = 2.005 Mg m3
Orthorhombic, Pcc2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2 -2cCell parameters from 903 reflections
a = 7.6216 (16) Åθ = 2.7–27.5°
b = 30.003 (6) ŵ = 6.46 mm1
c = 5.8841 (13) ÅT = 173 K
V = 1345.5 (5) Å3Plate, pale yellow
Z = 40.37 × 0.24 × 0.10 mm
Siemens SMART Platform CCD diffractometer3045 independent reflections
Radiation source: fine-focus sealed tube2818 reflections with I > 2σ(I)
graphiteRint = 0.035
ω scansθmax = 27.5°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −9→9
Tmin = 0.184, Tmax = 0.524k = −38→38
9565 measured reflectionsl = −7→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.114w = 1/[σ2(Fo2) + (0.0403P)2 + 2.9087P] where P = (Fo2 + 2Fc2)/3
S = 1.25(Δ/σ)max = 0.001
3045 reflectionsΔρmax = 1.24 e Å3
155 parametersΔρmin = −0.62 e Å3
1 restraintAbsolute structure: Flack (1983), 1341 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The structure refined as a merohedral inversion twin, whose mass ratio converged to 61:39.
xyzUiso*/Ueq
Br10.69877 (9)0.96042 (2)1.02236 (11)0.0374 (2)
Br20.71126 (13)0.54014 (2)0.07093 (13)0.0532 (3)
S10.6713 (2)0.86007 (5)0.9031 (3)0.0271 (3)
S20.81817 (19)0.76622 (5)0.3646 (3)0.0232 (3)
S30.6749 (2)0.62433 (5)0.3757 (3)0.0279 (3)
C10.7418 (8)0.9124 (2)0.8288 (11)0.0253 (13)
C20.8278 (8)0.9124 (2)0.6263 (12)0.0287 (14)
H20.87610.93840.55840.034*
C30.8376 (7)0.86976 (19)0.5284 (11)0.0238 (12)
H30.89330.86420.38680.029*
C40.7597 (7)0.8370 (2)0.6553 (10)0.0215 (12)
C50.7360 (7)0.7908 (2)0.6122 (10)0.0172 (12)
C60.6539 (7)0.75937 (18)0.7416 (10)0.0197 (12)
H60.60090.76600.88380.024*
C70.6546 (7)0.71661 (19)0.6471 (10)0.0201 (12)
H70.60160.69160.71820.024*
C80.7397 (8)0.71439 (19)0.4407 (12)0.0190 (12)
C90.7621 (7)0.67576 (19)0.2972 (10)0.0175 (11)
C100.8467 (8)0.6726 (2)0.0932 (10)0.0233 (12)
H100.90360.69720.02310.028*
C110.8421 (8)0.62914 (19)−0.0055 (11)0.0249 (12)
H110.89270.6216−0.14790.030*
C120.7553 (9)0.5999 (2)0.1323 (12)0.0269 (13)
U11U22U33U12U13U23
Br10.0447 (4)0.0317 (4)0.0359 (4)0.0053 (3)0.0051 (4)−0.0089 (3)
Br20.0814 (7)0.0272 (4)0.0512 (7)−0.0077 (4)0.0045 (5)−0.0099 (4)
S10.0315 (8)0.0282 (7)0.0217 (8)−0.0025 (6)0.0079 (6)−0.0021 (6)
S20.0252 (7)0.0259 (7)0.0185 (7)−0.0031 (6)0.0045 (6)0.0006 (6)
S30.0338 (8)0.0234 (7)0.0263 (8)−0.0046 (6)0.0066 (7)0.0012 (7)
C10.028 (3)0.025 (3)0.023 (3)0.002 (2)−0.005 (3)−0.003 (3)
C20.023 (3)0.029 (3)0.035 (3)−0.002 (2)−0.003 (3)0.009 (3)
C30.026 (3)0.024 (3)0.021 (3)0.000 (2)0.006 (3)0.004 (3)
C40.018 (3)0.030 (3)0.017 (3)0.003 (2)0.000 (2)0.000 (2)
C50.012 (3)0.026 (3)0.013 (3)−0.001 (2)−0.003 (2)−0.004 (2)
C60.019 (3)0.023 (3)0.017 (3)−0.001 (2)−0.001 (2)0.001 (2)
C70.012 (3)0.026 (3)0.022 (3)0.000 (2)−0.001 (2)0.005 (2)
C80.014 (2)0.017 (3)0.026 (3)−0.002 (2)0.004 (2)0.010 (2)
C90.016 (3)0.015 (3)0.021 (3)0.002 (2)−0.001 (2)0.000 (2)
C100.020 (3)0.029 (3)0.021 (3)0.002 (2)−0.001 (2)0.003 (2)
C110.028 (3)0.023 (3)0.024 (3)0.005 (2)0.004 (3)−0.006 (2)
C120.035 (3)0.022 (3)0.024 (3)−0.004 (3)0.000 (3)−0.006 (3)
Br1—C11.864 (6)C4—C51.419 (8)
Br2—C121.858 (6)C5—C61.365 (8)
S1—C11.717 (7)C6—C71.398 (8)
S1—C41.749 (6)C6—H60.9500
S2—C81.725 (6)C7—C81.379 (9)
S2—C51.750 (6)C7—H70.9500
S3—C121.722 (7)C8—C91.444 (8)
S3—C91.742 (6)C9—C101.366 (8)
C1—C21.360 (10)C10—C111.428 (8)
C2—C31.404 (9)C10—H100.9500
C2—H20.9500C11—C121.367 (9)
C3—C41.370 (8)C11—H110.9500
C3—H30.9500
C1—S1—C491.7 (3)C7—C6—H6122.9
C8—S2—C592.3 (3)C8—C7—C6113.4 (5)
C12—S3—C991.2 (3)C8—C7—H7123.3
C2—C1—S1111.9 (5)C6—C7—H7123.3
C2—C1—Br1128.4 (5)C7—C8—C9127.6 (5)
S1—C1—Br1119.8 (4)C7—C8—S2110.4 (5)
C1—C2—C3112.7 (6)C9—C8—S2122.1 (5)
C1—C2—H2123.6C10—C9—C8128.7 (5)
C3—C2—H2123.6C10—C9—S3110.6 (4)
C4—C3—C2114.0 (6)C8—C9—S3120.7 (4)
C4—C3—H3123.0C9—C10—C11114.2 (6)
C2—C3—H3123.0C9—C10—H10122.9
C3—C4—C5131.2 (5)C11—C10—H10122.9
C3—C4—S1109.7 (5)C12—C11—C10110.9 (5)
C5—C4—S1119.1 (4)C12—C11—H11124.5
C6—C5—C4129.3 (5)C10—C11—H11124.5
C6—C5—S2109.7 (4)C11—C12—S3113.0 (5)
C4—C5—S2121.0 (4)C11—C12—Br2126.3 (5)
C5—C6—C7114.3 (5)S3—C12—Br2120.6 (4)
C5—C6—H6122.9
C4—S1—C1—C20.0 (5)C6—C7—C8—C9−179.1 (6)
C4—S1—C1—Br1−179.1 (4)C6—C7—C8—S2−0.3 (6)
S1—C1—C2—C30.1 (7)C5—S2—C8—C70.0 (5)
Br1—C1—C2—C3179.1 (5)C5—S2—C8—C9179.0 (5)
C1—C2—C3—C4−0.2 (8)C7—C8—C9—C10−179.5 (6)
C2—C3—C4—C5177.2 (6)S2—C8—C9—C101.8 (9)
C2—C3—C4—S10.2 (7)C7—C8—C9—S30.8 (9)
C1—S1—C4—C3−0.1 (5)S2—C8—C9—S3−178.0 (3)
C1—S1—C4—C5−177.6 (5)C12—S3—C9—C100.2 (5)
C3—C4—C5—C6−178.4 (7)C12—S3—C9—C8180.0 (5)
S1—C4—C5—C6−1.6 (9)C8—C9—C10—C11−179.2 (6)
C3—C4—C5—S22.0 (9)S3—C9—C10—C110.6 (7)
S1—C4—C5—S2178.8 (3)C9—C10—C11—C12−1.3 (8)
C8—S2—C5—C60.2 (5)C10—C11—C12—S31.4 (7)
C8—S2—C5—C4179.8 (5)C10—C11—C12—Br2178.2 (5)
C4—C5—C6—C7−180.0 (5)C9—S3—C12—C11−1.0 (5)
S2—C5—C6—C7−0.4 (7)C9—S3—C12—Br2−177.9 (4)
C5—C6—C7—C80.4 (7)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Functional oligothiophenes: molecular design for multidimensional nanoarchitectures and their applications.

Authors:  Amaresh Mishra; Chang-Qi Ma; Peter Bäuerle
Journal:  Chem Rev       Date:  2009-03-11       Impact factor: 60.622

  2 in total

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